* installing *source* package 'tidysq' ... ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' using C++17 g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c apply_R_function.cpp -o apply_R_function.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bite.cpp -o bite.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c collapse.cpp -o collapse.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c complement.cpp -o complement.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c find_invalid_letters.cpp -o find_invalid_letters.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c find_motifs.cpp -o find_motifs.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c get_standard_alphabet.cpp -o get_standard_alphabet.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c guess_standard_alph.cpp -o guess_standard_alph.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c has.cpp -o has.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c obtain_alphabet.cpp -o obtain_alphabet.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c pack.cpp -o pack.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c paste.cpp -o paste.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c random_sq.cpp -o random_sq.o In file included from ../inst/include/tidysq/ops/pack.h:5, from ../inst/include/tidysq/ops/random_sq.h:5, from random_sq.cpp:3: ../inst/include/tidysq/sqapply.h: In instantiation of 'VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector&) [with VECTOR_IN = std::vector; ELEMENT_IN = long long int; VECTOR_OUT = Sq; ELEMENT_OUT = Sequence]': ../inst/include/tidysq/sqapply.h:23:71: required from 'VECTOR_OUT tidysq::sqapply(const VECTOR_IN&, ops::OperationVectorToVector&&) [with VECTOR_IN = std::vector; ELEMENT_IN = long long int; VECTOR_OUT = Sq; ELEMENT_OUT = Sequence]' ../inst/include/tidysq/ops/random_sq.h:62:23: required from 'tidysq::Sq tidysq::random_sq(const std::vector&, const Alphabet&, const bool&) [with INTERNAL = RCPP_IT]' random_sq.cpp:22:42: required from here ../inst/include/tidysq/sqapply.h:13:29: warning: comparison of integer expressions of different signedness: 'tidysq::LenSq' {aka 'long long int'} and 'std::vector::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 13 | for (LenSq i = 0; i < vector_in.size(); i++) { | ~~^~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c read_fasta.cpp -o read_fasta.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c remove_NA.cpp -o remove_NA.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c remove_ambiguous.cpp -o remove_ambiguous.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c reverse.cpp -o reverse.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sqapply.cpp -o sqapply.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c substitute_letters.cpp -o substitute_letters.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-pack.cpp -o test-pack.o In file included from ../inst/include/tidysq/ops/unpack.h:6, from ../inst/include/tidysq/Sq.h:5, from ../inst/include/tidysq.h:5, from test-pack.cpp:3: ../inst/include/tidysq/ProtoSq.h: In instantiation of 'bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::RAWS_PT]': test-pack.cpp:11:5: required from 'void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::RAWS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]' test-pack.cpp:191:5: required from here ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: 'tidysq::LenSq' {aka 'long long int'} and 'std::vector, std::allocator > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] 68 | for (LenSq i = 0; i < content_.size(); i++) { | ~~^~~~~~~~~~~~~~~~~ ../inst/include/tidysq/ProtoSq.h: In instantiation of 'bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::INTS_PT]': test-pack.cpp:11:5: required from 'void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::INTS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]' test-pack.cpp:191:5: required from here ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: 'tidysq::LenSq' {aka 'long long int'} and 'std::vector, std::allocator > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] ../inst/include/tidysq/ProtoSq.h: In instantiation of 'bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::STRINGS_PT]': test-pack.cpp:11:5: required from 'void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::STRINGS_PT; INTERNAL_PACKED = tidysq::RCPP_IT]' test-pack.cpp:191:5: required from here ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: 'tidysq::LenSq' {aka 'long long int'} and 'std::vector, std::allocator > >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] ../inst/include/tidysq/ProtoSq.h: In instantiation of 'bool tidysq::ProtoSq::operator==(const tidysq::ProtoSq&) const [with INTERNAL = tidysq::STD_IT; PROTO = tidysq::STRING_PT]': test-pack.cpp:11:5: required from 'void test_packing_and_unpacking(const tidysq::ProtoSq&) [with INTERNAL_UNPACKED = tidysq::STD_IT; PROTO = tidysq::STRING_PT; INTERNAL_PACKED = tidysq::RCPP_IT]' test-pack.cpp:191:5: required from here ../inst/include/tidysq/ProtoSq.h:68:32: warning: comparison of integer expressions of different signedness: 'tidysq::LenSq' {aka 'long long int'} and 'std::vector >::size_type' {aka 'long long unsigned int'} [-Wsign-compare] g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c test-runner.cpp -o test-runner.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c translate.cpp -o translate.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c typify.cpp -o typify.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c unpack.cpp -o unpack.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I../inst/include/ -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/testthat/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DSTRICT_R_HEADERS=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c write_fasta.cpp -o write_fasta.o g++ -shared -s -static-libgcc -o tidysq.dll tmp.def RcppExports.o apply_R_function.o bite.o collapse.o complement.o find_invalid_letters.o find_motifs.o get_standard_alphabet.o guess_standard_alph.o has.o obtain_alphabet.o pack.o paste.o random_sq.o read_fasta.o remove_NA.o remove_ambiguous.o reverse.o sqapply.o substitute_letters.o test-pack.o test-runner.o translate.o typify.o unpack.o write_fasta.o -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-tidysq/00new/tidysq/libs/x64 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidysq)