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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(tidypopgen)
Loading required package: dplyr

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: tibble
> 
> test_check("tidypopgen")
Adding missing grouping variables: `population`
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/d/temp/2026_01_23_01_50_00_4475/Rtmp6BmUMQ/rapp-bin-frontmatter162645242494:/d/temp/2026_01_21_01_50_00_30007/RtmpQVQbNw/rapp-bin-frontmatter3c5c39822e26:/d/temp/2026_01_20_01_50_00_10005/Rtmp2N7GcE/rapp-bin-frontmatterc6b443cf717a:/d/temp/2026_01_17_01_50_00_15534/RtmpqWy4pd/rapp-bin-frontmatter79203f0369d7:/d/temp/2026_01_16_01_50_00_28300/Rtmp42JQtM/rapp-bin-frontmattera7f846a45f1b:/d/temp/2026_01_15_01_50_00_8298/RtmpqSC3PC/rapp-bin-frontmatterc3805a414940:/d/temp/2026_01_13_14_27_56_18496/Rtmpmm7HWl/rapp-bin-frontmatter1a0b870832ce:/d/temp/2026_01_12_01_50_00_13828/RtmpQLPNQI/rapp-bin-frontmattere12c61066b66:/d/temp/2026_01_09_01_50_00_19358/RtmpYvLICx/rapp-bin-frontmatter9d6c747629a:/d/temp/2026_01_08_01_50_00_32124/RtmpoZOPK3/rapp-bin-frontmatter1aee03fe36b10:/d/temp/2026_01_05_17_07_06_20738/RtmpS2euBA/rapp-bin-frontmatter109602b8915db:/d/temp/2025_12_31_01_50_00_3180/RtmpQf6gGR/rapp-bin-frontmatter36f8104c373e:/d/temp/2025_12_30_01_50_00_15946/RtmpIrCka1/rapp-bin-frontmatterfdc037903d3:/d/temp/2025_12_28_01_50_00_8710/RtmpY3cM1K/rapp-bin-frontmatter8aec60bb2a05:/d/temp/2025_12_27_01_50_00_21475/RtmpaoF6rL/rapp-bin-frontmatterd8c03b2c443a:/d/temp/2025_12_25_01_50_00_14239/RtmpmUtxYZ/rapp-bin-frontmatter6e842e592298:/d/temp/2025_12_24_01_50_00_27005/RtmpSuFabe/rapp-bin-frontmatter83d020d62b6f:/d/temp/2025_12_23_01_50_00_7003/RtmpKK5FQq/rapp-bin-frontmatterebe833fd358:/d/temp/2025_12_19_01_50_00_25299/RtmpSIiD7n/rapp-bin-frontmatter99b07f82792c:/d/temp/2025_12_18_01_50_01_5300/RtmpSq3ehp/rapp-bin-frontmatter125986a9d26d7:/d/temp/2025_12_17_01_50_00_18063/RtmpSWIjqq/rapp-bin-frontmatter5d8c7f1736d9:/d/temp/2025_12_17_01_50_00_18063/RtmpExkgEt/rapp-bin-frontmatter3b287ed4687a:/d/temp/2025_12_14_19_55_16_6858/Rtmp6Jo8U7/rapp-bin-frontmatter10c8c640d83:/d/temp/2025_12_14_19_19_02_32527/RtmpSYy8cT/rapp-bin-frontmatter101c8619d3538:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R/bin/x64/)
/usr/bin/which: no admixture in (/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/d/RCompile/recent/R/bin/x64:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:.:/usr/bin:/x86_64-w64-mingw32.static.posix/bin:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files/gs/gs/bin:/d/compiler/qpdf/bin:/d/RCompile/CRANpkg/extralibs/localsolver_4_0/bin:/d/RCompile/CRANpkg/extralibs/MARK:/c/Program Files/7-Zip:/d/Compiler/gretl:/c/Program Files/Quarto/bin:/d/compiler/Ruby/bin:/c/Program Files/Microsoft MPI/Bin:/c/Program Files/Python/Scripts:/c/Program Files/Python:/c/Windows/system32:/c/Windows:/c/Windows/System32/Wbem:/c/Windows/System32/WindowsPowerShell/v1.0:/c/Windows/System32/OpenSSH:/c/Program Files/PuTTY:/c/Program Files (x86)/WinSCP:/c/Program Files/Pandoc:/c/Program Files/MiKTeX/miktex/bin/x64:/c/Program Files (x86)/Windows Kits/10/Windows Performance Toolkit:/c/Program Files/gs/gs/bin:/c/Program Files/jdk-11.0.18.10-hotspot/bin:/d/compiler/perl/c/bin:/d/compiler/perl/perl/site/bin:/d/compiler/perl/perl/bin:/d/temp/2026_01_23_01_50_00_4475/Rtmp6BmUMQ/rapp-bin-frontmatter162645242494:/d/temp/2026_01_21_01_50_00_30007/RtmpQVQbNw/rapp-bin-frontmatter3c5c39822e26:/d/temp/2026_01_20_01_50_00_10005/Rtmp2N7GcE/rapp-bin-frontmatterc6b443cf717a:/d/temp/2026_01_17_01_50_00_15534/RtmpqWy4pd/rapp-bin-frontmatter79203f0369d7:/d/temp/2026_01_16_01_50_00_28300/Rtmp42JQtM/rapp-bin-frontmattera7f846a45f1b:/d/temp/2026_01_15_01_50_00_8298/RtmpqSC3PC/rapp-bin-frontmatterc3805a414940:/d/temp/2026_01_13_14_27_56_18496/Rtmpmm7HWl/rapp-bin-frontmatter1a0b870832ce:/d/temp/2026_01_12_01_50_00_13828/RtmpQLPNQI/rapp-bin-frontmattere12c61066b66:/d/temp/2026_01_09_01_50_00_19358/RtmpYvLICx/rapp-bin-frontmatter9d6c747629a:/d/temp/2026_01_08_01_50_00_32124/RtmpoZOPK3/rapp-bin-frontmatter1aee03fe36b10:/d/temp/2026_01_05_17_07_06_20738/RtmpS2euBA/rapp-bin-frontmatter109602b8915db:/d/temp/2025_12_31_01_50_00_3180/RtmpQf6gGR/rapp-bin-frontmatter36f8104c373e:/d/temp/2025_12_30_01_50_00_15946/RtmpIrCka1/rapp-bin-frontmatterfdc037903d3:/d/temp/2025_12_28_01_50_00_8710/RtmpY3cM1K/rapp-bin-frontmatter8aec60bb2a05:/d/temp/2025_12_27_01_50_00_21475/RtmpaoF6rL/rapp-bin-frontmatterd8c03b2c443a:/d/temp/2025_12_25_01_50_00_14239/RtmpmUtxYZ/rapp-bin-frontmatter6e842e592298:/d/temp/2025_12_24_01_50_00_27005/RtmpSuFabe/rapp-bin-frontmatter83d020d62b6f:/d/temp/2025_12_23_01_50_00_7003/RtmpKK5FQq/rapp-bin-frontmatterebe833fd358:/d/temp/2025_12_19_01_50_00_25299/RtmpSIiD7n/rapp-bin-frontmatter99b07f82792c:/d/temp/2025_12_18_01_50_01_5300/RtmpSq3ehp/rapp-bin-frontmatter125986a9d26d7:/d/temp/2025_12_17_01_50_00_18063/RtmpSWIjqq/rapp-bin-frontmatter5d8c7f1736d9:/d/temp/2025_12_17_01_50_00_18063/RtmpExkgEt/rapp-bin-frontmatter3b287ed4687a:/d/temp/2025_12_14_19_55_16_6858/Rtmp6Jo8U7/rapp-bin-frontmatter10c8c640d83:/d/temp/2025_12_14_19_19_02_32527/RtmpSYy8cT/rapp-bin-frontmatter101c8619d3538:/c/Users/CRAN/.cargo/bin:/c/Users/CRAN/AppData/Local/Microsoft/WindowsApps:/usr/bin:/c/Program Files/Julia/bin:/c/Users/CRAN/.cargo/bin:/d/compiler/LDC/bin:/d/RCompile/recent/R/bin/x64/)
[ FAIL 0 | WARN 5 | SKIP 4 | PASS 1034 ]

══ Skipped tests (4) ═══════════════════════════════════════════════════════════
• (system2("which", args = "admixture", stdout = NULL) != 0) &&
  !requireNamespace("tidygenclust", quietly = TRUE) is TRUE (2):
  'test_gt_admix_methods.R:2:1', 'test_gt_admixture.R:2:1'
• On CRAN (1): 'test_gt_pca.R:415:1'
• {admixtools} is not installed (1): 'test_gt_extract_f2.R:1:1'

[ FAIL 0 | WARN 5 | SKIP 4 | PASS 1034 ]
> 
> proc.time()
   user  system elapsed 
  83.53   10.35   93.92