# Tests for [add_]linpred_rvars # # Author: mjskay ############################################################################### suppressWarnings(suppressMessages({ library(dplyr) library(tidyr) library(magrittr) library(posterior) })) # data mtcars_tbl = mtcars %>% set_rownames(seq_len(nrow(.))) %>% as_tibble() # for reliable testing, need to use only a single core (otherwise random # numbers do not seem to always be reproducible on brms) options(mc.cores = 1) test_that("[add_]linpred_rvars works on a simple rstanarm model", { skip_if_not_installed("rstanarm") m_hp_wt = readRDS(test_path("../models/models.rstanarm.m_hp_wt.rds")) ref = mtcars_tbl %>% mutate(.linpred = rvar(rstantools::posterior_linpred(m_hp_wt, newdata = mtcars_tbl))) expect_equal(linpred_rvars(m_hp_wt, mtcars_tbl), ref) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_wt, value = "foo"), rename(ref, foo = .linpred)) #linpred_rvars.default should work fine here expect_equal(linpred_rvars.default(m_hp_wt, mtcars_tbl), ref) #subsetting to test the `ndraws` argument set.seed(1234) draw_subset = sample.int(ndraws(ref$.linpred), 10) filtered_ref = ref draws_of(filtered_ref$.linpred) = draws_of(filtered_ref$.linpred)[draw_subset,] dimnames(draws_of(filtered_ref$.linpred))[[1]] = 1:10 expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_wt, ndraws = 10, seed = 1234), filtered_ref) }) test_that("[add_]linpred_rvars works on brms models with dpar", { skip_if_not_installed("brms") m_hp_sigma = readRDS(test_path("../models/models.brms.m_hp_sigma.rds")) ref = mtcars_tbl %>% mutate( .linpred = rvar(rstantools::posterior_linpred(m_hp_sigma, newdata = mtcars_tbl)), mu = rvar(rstantools::posterior_linpred(m_hp_sigma, newdata = mtcars_tbl, dpar = "mu")), sigma = rvar(rstantools::posterior_linpred(m_hp_sigma, newdata = mtcars_tbl, dpar = "sigma")) ) expect_equal(linpred_rvars(m_hp_sigma, mtcars_tbl, dpar = TRUE), ref) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_sigma, dpar = TRUE), ref) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_sigma, dpar = "sigma"), select(ref, -mu)) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_sigma, dpar = "mu"), select(ref, -sigma)) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_sigma, dpar = FALSE), select(ref, -sigma, -mu)) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_sigma, dpar = NULL), select(ref, -sigma, -mu)) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_sigma, dpar = list("mu", "sigma", s1 = "sigma")), mutate(ref, s1 = sigma)) #subsetting to test the `ndraws` argument filtered_ref = ref set.seed(1234) filtered_ref$.linpred = rvar(rstantools::posterior_linpred(m_hp_sigma, newdata = mtcars_tbl, ndraws = 10)) set.seed(1234) filtered_ref$mu = rvar(rstantools::posterior_linpred(m_hp_sigma, newdata = mtcars_tbl, dpar = "mu", ndraws = 10)) set.seed(1234) filtered_ref$sigma = rvar(rstantools::posterior_linpred(m_hp_sigma, newdata = mtcars_tbl, dpar = "sigma", ndraws = 10)) expect_equal(add_linpred_rvars(mtcars_tbl, m_hp_sigma, ndraws = 10, seed = 1234, dpar = TRUE), filtered_ref) }) test_that("[add_]linpred_rvars works on brms models with ordinal outcomes", { skip_if_not_installed("brms") m_cyl_mpg = readRDS(test_path("../models/models.brms.m_cyl_mpg.rds")) ref = mtcars_tbl %>% mutate(.linpred = rvar(rstantools::posterior_linpred(m_cyl_mpg, newdata = mtcars_tbl))) expect_equal(linpred_rvars(m_cyl_mpg, mtcars_tbl), ref) expect_equal(add_linpred_rvars(mtcars_tbl, m_cyl_mpg), ref) }) test_that("[add_]linpred_rvars works on brms models with dirichlet outcomes", { skip_if_not_installed("brms") m_dirich = readRDS(test_path("../models/models.brms.m_dirich.rds")) grid = tibble(x = c("A", "B")) ref = grid %>% mutate(.linpred = rvar(rstantools::posterior_linpred(m_dirich, newdata = grid))) expect_equal(linpred_rvars(m_dirich, grid), ref) # column transformation column_ref = ref %>% mutate(.row = 1:n()) %>% group_by(across(-.linpred)) %>% reframe(g_pred = colnames(.linpred) %||% 1:ncol(.linpred), .linpred = t(.linpred)) %>% arrange(g_pred, .row) dim(column_ref$.linpred) = length(column_ref$.linpred) expect_equal(add_linpred_rvars(grid, m_dirich, columns_to = "g_pred"), column_ref) }) test_that("[add_]linpred_rvars throws an error when re.form is called instead of re_formula in rstanarm", { skip_if_not_installed("rstanarm") m_hp_wt = readRDS(test_path("../models/models.rstanarm.m_hp_wt.rds")) expect_error( m_hp_wt %>% linpred_rvars(mtcars_tbl, re.form = NULL), "`re.form.*.`re_formula`.*.See the documentation for additional details." ) expect_error( mtcars_tbl %>% add_linpred_rvars(m_hp_wt, re.form = NULL), "`re.form.*.`re_formula`.*.See the documentation for additional details." ) })