downloading reverse dependencies ‘inferCSN’, ‘thisplot’ trying URL 'file:///data/Repositories/CRAN/src/contrib/inferCSN_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/thisplot_0.3.5.tar.gz' installing dependencies ‘ggpointdensity’, ‘ggupset’, ‘ggVennDiagram’, ‘L0Learn’, ‘precrec’, ‘RTransferEntropy’, ‘thisutils’ begin installing package ‘L0Learn’ begin installing package ‘thisutils’ begin installing package ‘ggpointdensity’ begin installing package ‘precrec’ begin installing package ‘RTransferEntropy’ begin installing package ‘ggupset’ begin installing package ‘ggVennDiagram’ * installing *source* package ‘ggpointdensity’ ... ** this is package ‘ggpointdensity’ version ‘0.2.1’ ** package ‘ggpointdensity’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpC0VmUT/R.INSTALL36fced163671d9/ggpointdensity/src' gcc-15 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count_neighbors.c -o count_neighbors.o gcc-15 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o ggpointdensity.so count_neighbors.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpC0VmUT/R.INSTALL36fced163671d9/ggpointdensity/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ggpointdensity/00new/ggpointdensity/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggpointdensity) * installing *source* package ‘ggupset’ ... ** this is package ‘ggupset’ version ‘0.4.1’ ** package ‘ggupset’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggupset) * installing *source* package ‘ggVennDiagram’ ... ** this is package ‘ggVennDiagram’ version ‘1.5.7’ ** package ‘ggVennDiagram’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggVennDiagram) * installing *source* package ‘RTransferEntropy’ ... ** this is package ‘RTransferEntropy’ version ‘0.2.21’ ** package ‘RTransferEntropy’ successfully unpacked and MD5 sums checked ** using staged installation ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdNmzTk/R.INSTALL36fce7706c33c4/RTransferEntropy/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c calculate_transition_probabilities.cpp -o calculate_transition_probabilities.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cluster_gen.cpp -o cluster_gen.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c freq_table.cpp -o freq_table.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o RTransferEntropy.so RcppExports.o calculate_transition_probabilities.o cluster_gen.o freq_table.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdNmzTk/R.INSTALL36fce7706c33c4/RTransferEntropy/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RTransferEntropy/00new/RTransferEntropy/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTransferEntropy) * installing *source* package ‘thisutils’ ... ** this is package ‘thisutils’ version ‘0.4.3’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmphAPtyA/R.INSTALL36fce529458436/thisutils/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix_to_table.cpp -o matrix_to_table.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c split_indices.cpp -o split_indices.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c table_to_matrix.cpp -o table_to_matrix.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o thisutils.so RcppExports.o matrix_to_table.o split_indices.o table_to_matrix.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmphAPtyA/R.INSTALL36fce529458436/thisutils/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-thisutils/00new/thisutils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (thisutils) * installing *source* package ‘precrec’ ... ** this is package ‘precrec’ version ‘0.14.5’ ** package ‘precrec’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpV5fUGW/R.INSTALL36fceb1d7517df/precrec/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c precrec_misc.cpp -o precrec_misc.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c precrec_mmx.cpp -o precrec_mmx.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c precrec_plx.cpp -o precrec_plx.o g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o precrec.so RcppExports.o precrec_misc.o precrec_mmx.o precrec_plx.o -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpV5fUGW/R.INSTALL36fceb1d7517df/precrec/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-precrec/00new/precrec/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (precrec) * installing *source* package ‘L0Learn’ ... ** this is package ‘L0Learn’ version ‘2.1.0’ ** package ‘L0Learn’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-15 -std=gnu++20 accepts -g... yes checking how to run the C++ preprocessor... g++-15 -std=gnu++20 -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether g++-15 -std=gnu++20 accepts -g... (cached) yes configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-13) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3LVEz4/R.INSTALL36fcea72aeae60/L0Learn/src' g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c BetaVector.cpp -o BetaVector.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c CDL012LogisticSwaps.cpp -o CDL012LogisticSwaps.o CDL012LogisticSwaps.cpp: In instantiation of ‘FitResult CDL012LogisticSwaps::_Fit() [with T = arma::Mat]’: CDL012LogisticSwaps.cpp:172:16: required from here 172 | template class CDL012LogisticSwaps; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CDL012LogisticSwaps.cpp:72:40: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 72 | for(std::size_t ll = 0; ll < std::min(50, (int) this->p); ++ll) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CDL012LogisticSwaps.cpp: In instantiation of ‘FitResult CDL012LogisticSwaps::_Fit() [with T = arma::SpMat]’: CDL012LogisticSwaps.cpp:173:16: required from here 173 | template class CDL012LogisticSwaps; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CDL012LogisticSwaps.cpp:72:40: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘const int’ [-Wsign-compare] 72 | for(std::size_t ll = 0; ll < std::min(50, (int) this->p); ++ll) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c CDL012SquaredHingeSwaps.cpp -o CDL012SquaredHingeSwaps.o In file included from include/CDL012SquaredHingeSwaps.h:6, from CDL012SquaredHingeSwaps.cpp:1: include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ CDL012SquaredHingeSwaps.cpp: In member function ‘FitResult CDL012SquaredHingeSwaps::_Fit() [with T = arma::Mat]’: CDL012SquaredHingeSwaps.cpp:28:17: warning: ‘maxindex’ may be used uninitialized [-Wmaybe-uninitialized] 28 | std::size_t maxindex; | ^~~~~~~~ CDL012SquaredHingeSwaps.cpp:105:35: warning: ‘Bmaxindex’ may be used uninitialized [-Wmaybe-uninitialized] 105 | this->B[maxindex] = Bmaxindex; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ CDL012SquaredHingeSwaps.cpp:29:12: note: ‘Bmaxindex’ was declared here 29 | double Bmaxindex; | ^~~~~~~~~ CDL012SquaredHingeSwaps.cpp: In member function ‘FitResult CDL012SquaredHingeSwaps::_Fit() [with T = arma::SpMat]’: CDL012SquaredHingeSwaps.cpp:28:17: warning: ‘maxindex’ may be used uninitialized [-Wmaybe-uninitialized] 28 | std::size_t maxindex; | ^~~~~~~~ CDL012SquaredHingeSwaps.cpp:105:35: warning: ‘Bmaxindex’ may be used uninitialized [-Wmaybe-uninitialized] 105 | this->B[maxindex] = Bmaxindex; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ CDL012SquaredHingeSwaps.cpp:29:12: note: ‘Bmaxindex’ was declared here 29 | double Bmaxindex; | ^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c CDL012Swaps.cpp -o CDL012Swaps.o CDL012Swaps.cpp: In instantiation of ‘FitResult CDL012Swaps::_Fit() [with T = arma::Mat]’: CDL012Swaps.cpp:97:16: required from here 97 | template class CDL012Swaps; | ^~~~~~~~~~~~~~~~~~~~~~ CDL012Swaps.cpp:17:12: warning: variable ‘objective’ set but not used [-Wunused-but-set-variable] 17 | double objective = result.Objective; | ^~~~~~~~~ CDL012Swaps.cpp: In instantiation of ‘FitResult CDL012Swaps::_Fit() [with T = arma::SpMat]’: CDL012Swaps.cpp:98:16: required from here 98 | template class CDL012Swaps; | ^~~~~~~~~~~~~~~~~~~~~~~~~ CDL012Swaps.cpp:17:12: warning: variable ‘objective’ set but not used [-Wunused-but-set-variable] 17 | double objective = result.Objective; | ^~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c Grid.cpp -o Grid.o In file included from include/MakeCD.h:10, from include/Grid1D.h:10, from include/Grid.h:9, from Grid.cpp:1: include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c Grid1D.cpp -o Grid1D.o In file included from include/MakeCD.h:10, from include/Grid1D.h:10, from Grid1D.cpp:1: include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ Grid1D.cpp: In instantiation of ‘std::vector > > Grid1D::Fit() [with T = arma::Mat]’: Grid1D.cpp:236:16: required from here 236 | template class Grid1D; | ^~~~~~~~~~~~~~~~~ Grid1D.cpp:194:26: warning: variable ‘samesupp’ set but not used [-Wunused-but-set-variable] 194 | bool samesupp = false; | ^~~~~~~~ Grid1D.cpp: In instantiation of ‘std::vector > > Grid1D::Fit() [with T = arma::SpMat]’: Grid1D.cpp:237:16: required from here 237 | template class Grid1D; | ^~~~~~~~~~~~~~~~~~~~ Grid1D.cpp:194:26: warning: variable ‘samesupp’ set but not used [-Wunused-but-set-variable] 194 | bool samesupp = false; | ^~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c Grid2D.cpp -o Grid2D.o In file included from include/MakeCD.h:10, from include/Grid1D.h:10, from include/Grid2D.h:8, from Grid2D.cpp:1: include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ In file included from include/CD.h:9, from include/MakeCD.h:5: include/utils.h: In instantiation of ‘arma::sp_mat matrix_rows_get(const arma::sp_mat&, T1) [with T1 = arma::Col; arma::sp_mat = arma::SpMat]’: Grid2D.cpp:69:41: required from ‘std::vector > > > Grid2D::Fit() [with T = arma::SpMat]’ 69 | T indices_rows = matrix_rows_get(*X, indices); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~ Grid2D.cpp:126:16: required from here 126 | template class Grid2D; | ^~~~~~~~~~~~~~~~~~~~ include/utils.h:44:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 44 | for (auto i = 0; i < vector_of_row_indices.n_elem; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/15/vector:68, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:64, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:32, from include/Grid2D.h:4: In member function ‘constexpr std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > > > Grid2D::Fit() [with T = arma::Mat]’ at Grid2D.cpp:110:25: /usr/include/c++/15/bits/stl_vector.h:1264:41: warning: ‘index’ may be used uninitialized [-Wmaybe-uninitialized] 1264 | return *(this->_M_impl._M_start + __n); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ Grid2D.cpp: In member function ‘std::vector > > > Grid2D::Fit() [with T = arma::Mat]’: Grid2D.cpp:82:17: note: ‘index’ was declared here 82 | std::size_t index; | ^~~~~ In member function ‘constexpr std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::operator[](size_type) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘std::vector > > > Grid2D::Fit() [with T = arma::SpMat]’ at Grid2D.cpp:110:25: /usr/include/c++/15/bits/stl_vector.h:1264:41: warning: ‘index’ may be used uninitialized [-Wmaybe-uninitialized] 1264 | return *(this->_M_impl._M_start + __n); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ Grid2D.cpp: In member function ‘std::vector > > > Grid2D::Fit() [with T = arma::SpMat]’: Grid2D.cpp:82:17: note: ‘index’ was declared here 82 | std::size_t index; | ^~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c Interface.cpp -o Interface.o In file included from include/MakeCD.h:10, from include/Grid1D.h:10, from include/Grid.h:9, from include/Interface.h:7, from Interface.cpp:1: include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::Mat]’: include/CDL012SquaredHinge.h:205:16: required from here 205 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_FitWithBounds() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:169:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 169 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h: In instantiation of ‘FitResult CDL012SquaredHinge::_Fit() [with T = arma::SpMat]’: include/CDL012SquaredHinge.h:206:16: required from here 206 | template class CDL012SquaredHinge; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/CDL012SquaredHinge.h:123:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 123 | for (auto t = 0; t < this->MaxIters; ++t) { | ~~^~~~~~~~~~~~~~~~ In file included from include/CD.h:9, from include/MakeCD.h:5: include/utils.h: In instantiation of ‘arma::sp_mat matrix_rows_get(const arma::sp_mat&, T1) [with T1 = arma::Col; arma::sp_mat = arma::SpMat]’: Interface.cpp:225:34: required from ‘Rcpp::List _L0LearnCV(const T&, const arma::vec&, std::string, std::string, std::string, unsigned int, unsigned int, unsigned int, double, double, bool, unsigned int, double, double, bool, unsigned int, unsigned int, double, unsigned int, bool, std::vector >, unsigned int, double, unsigned int, bool, bool, const arma::vec&, const arma::vec&) [with T = arma::SpMat; Rcpp::List = Rcpp::Vector<19>; arma::vec = arma::Col; std::string = std::__cxx11::basic_string]’ 225 | T Xtraining = matrix_rows_get(X, trainingindicesarma); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ Interface.cpp:337:22: required from here 337 | return _L0LearnCV(X, y, Loss, Penalty, | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ 338 | Algorithm, NnzStopNum, G_ncols, G_nrows, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 | Lambda2Max, Lambda2Min, PartialSort, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 | MaxIters, rtol,atol, ActiveSet, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 | ActiveSetNum, MaxNumSwaps, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 | ScaleDownFactor, ScreenSize, LambdaU, Lambdas, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 | nfolds, seed, ExcludeFirstK, Intercept, withBounds, Lows, Highs); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ include/utils.h:44:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 44 | for (auto i = 0; i < vector_of_row_indices.n_elem; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c Normalize.cpp -o Normalize.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c Test_Interface.cpp -o Test_Interface.o In file included from include/Test_Interface.h:5, from Test_Interface.cpp:1: include/utils.h: In instantiation of ‘arma::sp_mat matrix_rows_get(const arma::sp_mat&, T1) [with T1 = arma::Col; arma::sp_mat = arma::SpMat]’: Test_Interface.cpp:22:27: required from here 22 | return matrix_rows_get(mat, rows); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ include/utils.h:44:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare] 44 | for (auto i = 0; i < vector_of_row_indices.n_elem; i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c profile.cpp -o profile.o g++-15 -std=gnu++20 -I"/home/hornik/tmp/R-d-gcc-15/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 "-Iinclude" -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o utils.cpp: In function ‘arma::rowvec matrix_normalize(arma::sp_mat&)’: utils.cpp:36:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 36 | for (auto col = 0; col < p; col++){ | ~~~~^~~ utils.cpp:43:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 43 | for (auto col = 0; col < p; col++){ | ~~~~^~~ utils.cpp: In function ‘arma::rowvec matrix_normalize(arma::mat&)’: utils.cpp:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 61 | for (auto col = 0; col < p; col++) { | ~~~~^~~ g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R-d-gcc-15/lib -Wl,-O1 -o L0Learn.so BetaVector.o CDL012LogisticSwaps.o CDL012SquaredHingeSwaps.o CDL012Swaps.o Grid.o Grid1D.o Grid2D.o Interface.o Normalize.o RcppExports.o Test_Interface.o profile.o utils.o -llapack -L/home/hornik/tmp/R-d-gcc-15/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-15/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3LVEz4/R.INSTALL36fcea72aeae60/L0Learn/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-L0Learn/00new/L0Learn/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (L0Learn) checking thisutils_0.4.3.tar.gz ... checking inferCSN_1.2.0.tar.gz ... checking thisplot_0.3.5.tar.gz ... Depends: Package: thisutils Depends: R (>= 4.1.0) Imports: cli, doParallel, foreach, Matrix, pak, parallel, Rcpp, rlang, stats, utils LinkingTo: Rcpp Timings: user system elapsed thisutils 44.163 4.387 53.691 Results: Check status summary: OK Source packages 1 Reverse depends 2 Check results summary: thisutils ... OK rdepends_inferCSN ... OK rdepends_thisplot ... OK