* using log directory ‘/srv/hornik/tmp/CRAN/theftdlc.Rcheck’
* using R Under development (unstable) (2024-03-10 r86088)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (5)
    Debian flang-new version 17.0.6 (5)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘theftdlc/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘theftdlc’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Trent Henderson <then6675@uni.sydney.edu.au>’

New submission
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘theftdlc’ can be installed ... [6s/6s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/9s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [2s/2s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [3s/3s] ERROR
  Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > library(testthat)
  > library(theftdlc)
  > 
  > test_check("theftdlc")
  
  Attaching package: 'theft'
  
  The following objects are masked from 'package:theftdlc':
  
      calculate_interval, compare_features, filter_duplicates,
      reduce_dims, tsfeature_classifier
  
  No IDs removed. All value vectors good for feature extraction.
  Running computations for catch22...
  
  Calculations completed for catch22.
  [ FAIL 1 | WARN 0 | SKIP 4 | PASS 0 ]
  
  ══ Skipped tests (4) ═══════════════════════════════════════════════════════════
  • On CRAN (4): 'test-classify.R:4:3', 'test-classify.R:11:3',
    'test-compare_features.R:4:3', 'test-compare_features.R:11:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-cluster.R:4:3'): default cluster ───────────────────────────────
  Error in `UseMethod("select")`: no applicable method for 'select' applied to an object of class "feature_calculations"
  Backtrace:
       ▆
    1. ├─theftdlc::cluster(feature_matrix, k = 6) at test-cluster.R:4:3
    2. │ └─... %>% dplyr::select(-c(.data$feature_set))
    3. ├─dplyr::select(., -c(.data$feature_set))
    4. ├─dplyr::mutate(., names = paste0(.data$feature_set, "_", .data$names))
    5. ├─tidyr::drop_na(.)
    6. ├─dplyr::ungroup(.)
    7. ├─dplyr::mutate(...)
    8. ├─dplyr::group_by(., .data$names)
    9. ├─tidyr::drop_na(.)
   10. └─dplyr::select(., c(.data$id, .data$names, .data$values, .data$feature_set))
  
  [ FAIL 1 | WARN 0 | SKIP 4 | PASS 0 ]
  Error: Test failures
  In addition: Warning messages:
  1: There was 1 warning in `dplyr::summarise()`.
  ℹ In argument: `Rcatch22::catch22_all(.data$values, catch24 = catch24)`.
  ℹ In group 1: `id = "AR(1)_1"` and `group = "AR(1)"`.
  Caused by warning:
  ! As of 0.1.14 the feature 'CO_f1ecac' returns a double instead of int
  This warning is displayed once per session. 
  2: Returning more (or less) than 1 row per `summarise()` group was deprecated in
  dplyr 1.1.0.
  ℹ Please use `reframe()` instead.
  ℹ When switching from `summarise()` to `reframe()`, remember that `reframe()`
    always returns an ungrouped data frame and adjust accordingly.
  ℹ The deprecated feature was likely used in the theft package.
    Please report the issue at <https://github.com/hendersontrent/theft/issues>. 
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [3s/3s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘theftdlc.Rmd’ using rmarkdown

Quitting from lines 68-69 [unnamed-chunk-5] (theftdlc.Rmd)
Error: processing vignette 'theftdlc.Rmd' failed with diagnostics:
no applicable method for 'mutate' applied to an object of class "feature_calculations"
--- failed re-building ‘theftdlc.Rmd’

SUMMARY: processing the following file failed:
  ‘theftdlc.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs, 1 NOTE