Package check result: NOTE Check: compiled code, Result: NOTE File ‘testthat/libs/testthat.so’: Found non-API calls to R: ‘SET_BODY’, ‘SET_CLOENV’, ‘SET_FORMALS’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Changes to worse in reverse depends: Package: AutoWMM Check: tests New result: ERROR Running ‘testthat.R’ [30m/30m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(AutoWMM) > > test_check("AutoWMM") using variance-weighted mean with multiplier method sampled path estimates Execution halted Package: easystats Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘citation.Rmd’ using rmarkdown --- finished re-building ‘citation.Rmd’ --- re-building ‘conventions.Rmd’ using rmarkdown --- finished re-building ‘conventions.Rmd’ --- re-building ‘list_of_functions.Rmd’ using rmarkdown --- finished re-building ‘list_of_functions.Rmd’ --- re-building ‘resources.Rmd’ using rmarkdown --- finished re-building ‘resources.Rmd’ --- re-building ‘version_policy.Rmd’ using rmarkdown --- finished re-building ‘version_policy.Rmd’ --- re-building ‘workflow_performance.rmd’ using rmarkdown Quitting from lines 85-86 [unnamed-chunk-4] (workflow_performance.rmd) Error: processing vignette 'workflow_performance.rmd' failed with diagnostics: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `glmmTMB` are not yet supported. --- failed re-building ‘workflow_performance.rmd’ SUMMARY: processing the following file failed: ‘workflow_performance.rmd’ Error: Vignette re-building failed. Execution halted Package: figpatch Check: tests New result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [1s/1s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(figpatch) > > test_check("figpatch") [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-fig.R:2:3'): Test Reading ────────────────────────────────────── Error: R: no decode delegate for this image format `' @ error/constitute.c/ReadImage/746 Backtrace: ▆ 1. ├─testthat::expect_error(...) at test-fig.R:2:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─figpatch::fig("brokenlink") 8. └─magick::image_read(path = path) 9. ├─base::withCallingHandlers(...) 10. └─magick:::magick_image_readpath(path, density, depth, strip, defines) [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ] Error: Test failures Execution halted Package: fitzRoy Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘aflca-coaches-votes.Rmd’ using rmarkdown --- finished re-building ‘aflca-coaches-votes.Rmd’ --- re-building ‘docker-support.Rmd’ using rmarkdown --- finished re-building ‘docker-support.Rmd’ --- re-building ‘elo-ratings-example.Rmd’ using rmarkdown --- finished re-building ‘elo-ratings-example.Rmd’ --- re-building ‘fitzRoy.Rmd’ using rmarkdown --- finished re-building ‘fitzRoy.Rmd’ --- re-building ‘main-fetch-functions.Rmd’ using rmarkdown --- finished re-building ‘main-fetch-functions.Rmd’ --- re-building ‘player-details.Rmd’ using rmarkdown --- finished re-building ‘player-details.Rmd’ --- re-building ‘score-worms.Rmd’ using rmarkdown Quitting from lines 46-47 [plot_score_worm] (score-worms.Rmd) Error: processing vignette 'score-worms.Rmd' failed with diagnostics: ℹ In index: 1. Caused by error in `dplyr::left_join()`: ! Join columns in `x` must be present in the data. ✖ Problem with `periodNumber`. --- failed re-building ‘score-worms.Rmd’ --- re-building ‘using-fryzigg-stats.Rmd’ using rmarkdown --- finished re-building ‘using-fryzigg-stats.Rmd’ --- re-building ‘using-squiggle-api.Rmd’ using rmarkdown --- finished re-building ‘using-squiggle-api.Rmd’ --- re-building ‘womens-stats.Rmd’ using rmarkdown --- finished re-building ‘womens-stats.Rmd’ SUMMARY: processing the following file failed: ‘score-worms.Rmd’ Error: Vignette re-building failed. Execution halted Package: JSmediation Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘jsmediation.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/JSmediation.Rcheck/vign_test/JSmediation/vignettes/jsmediation_files/figure-html/unnamed-chunk-5-1.png 672x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95626 bytes Input file size = 95836 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 77097 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 77097 Output IDAT size = 77097 bytes (18529 bytes decrease) Output file size = 77175 bytes (18661 bytes = 19.47% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/JSmediation.Rcheck/vign_test/JSmediation/vignettes/jsmediation_files/figure-html/unnamed-chunk-6-1.png 672x768 pixels, 3x8 bits/pixel, RGB Input IDAT size = 95687 bytes Input file size = 95897 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76874 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 76874 Output IDAT size = 76874 bytes (18813 bytes decrease) Output file size = 76952 bytes (18945 bytes = 19.76% decrease) Quitting from lines 178-180 [unnamed-chunk-7] (jsmediation.Rmd) Error: processing vignette 'jsmediation.Rmd' failed with diagnostics: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lm` are not yet supported. --- failed re-building ‘jsmediation.Rmd’ --- re-building ‘moderated-mediation.Rmd’ using rmarkdown --- finished re-building ‘moderated-mediation.Rmd’ SUMMARY: processing the following file failed: ‘jsmediation.Rmd’ Error: Vignette re-building failed. Execution halted Package: mathml Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘mathml.Rmd’ using rmarkdown Quitting from lines 217-286 [custom-operators] (mathml.Rmd) Error: processing vignette 'mathml.Rmd' failed with diagnostics: could not find function "escape_html" --- failed re-building ‘mathml.Rmd’ SUMMARY: processing the following file failed: ‘mathml.Rmd’ Error: Vignette re-building failed. Execution halted Package: parameters Check: examples New result: ERROR Running examples in ‘parameters-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dominance_analysis > ### Title: Dominance Analysis > ### Aliases: dominance_analysis > > ### ** Examples > > ## Don't show: > if (require("domir") && require("performance")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf + ## End(Don't show) + data(mtcars) + + # Dominance Analysis with Logit Regression + model <- glm(vs ~ cyl + carb + mpg, data = mtcars, family = binomial()) + + performance::r2(model) + dominance_analysis(model) + + # Dominance Analysis with Weighted Logit Regression + model_wt <- glm(vs ~ cyl + carb + mpg, + data = mtcars, + weights = wt, family = quasibinomial() + ) + + dominance_analysis(model_wt, quote_args = "weights") + ## Don't show: + }) # examplesIf Loading required package: domir Loading required package: performance > data(mtcars) > model <- glm(vs ~ cyl + carb + mpg, data = mtcars, family = binomial()) > performance::r2(model) # R2 for Logistic Regression Tjur's R2: 0.741 > dominance_analysis(model) Error in eval(expr[[3]]) : object 'da_df_cdl' not found Calls: ... .select_square_bracket -> .eval_expr -> eval -> eval Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed cluster_analysis 5.043 0.127 5.174 Package: parameters Check: tests New result: ERROR Running ‘testthat.R’ [174s/102s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(parameters) > library(testthat) > > test_check("parameters") Starting 2 test processes [ FAIL 1 | WARN 5 | SKIP 116 | PASS 655 ] ══ Skipped tests (116) ═════════════════════════════════════════════════════════ • Installed marginaleffects is version 0.24.0; but 1.0.0 is required (1): 'test-marginaleffects.R:1:1' • On CRAN (103): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:1:1', 'test-backticks.R:1:1', 'test-bootstrap_emmeans.R:1:1', 'test-bootstrap_parameters.R:1:1', 'test-brms.R:1:1', 'test-compare_parameters.R:91:7', 'test-compare_parameters.R:95:5', 'test-complete_separation.R:14:5', 'test-complete_separation.R:24:5', 'test-complete_separation.R:35:5', 'test-coxph.R:79:5', 'test-efa.R:1:1', 'test-emmGrid-df_colname.R:1:1', 'test-equivalence_test.R:10:3', 'test-equivalence_test.R:18:3', 'test-equivalence_test.R:82:3', 'test-format_model_parameters2.R:2:3', 'test-gam.R:30:1', 'test-get_scores.R:1:1', 'test-glmer.R:1:1', 'test-glmmTMB-2.R:1:1', 'test-glmmTMB-profile_CI.R:2:3', 'test-glmmTMB.R:8:1', 'test-helper.R:1:1', 'test-ivreg.R:54:3', 'test-include_reference.R:15:3', 'test-include_reference.R:67:3', 'test-lmerTest.R:1:1', 'test-mipo.R:19:3', 'test-mipo.R:33:3', 'test-mmrm.R:1:1', 'test-model_parameters.anova.R:1:1', 'test-model_parameters.aov.R:1:1', 'test-model_parameters.bracl.R:5:1', 'test-model_parameters.cgam.R:1:1', 'test-model_parameters.coxme.R:1:1', 'test-model_parameters.aov_es_ci.R:158:3', 'test-model_parameters.aov_es_ci.R:269:3', 'test-model_parameters.aov_es_ci.R:319:3', 'test-model_parameters.aov_es_ci.R:372:3', 'test-model_parameters.epi2x2.R:1:1', 'test-model_parameters.fixest_multi.R:3:1', 'test-model_parameters.fixest.R:2:3', 'test-model_parameters.fixest.R:77:3', 'test-model_parameters.ggeffects.R:12:3', 'test-model_parameters.glmgee.R:1:1', 'test-model_parameters.glm.R:40:3', 'test-model_parameters.glm.R:68:3', 'test-model_parameters.logistf.R:1:1', 'test-model_parameters.mclogit.R:5:1', 'test-model_parameters.mediate.R:32:3', 'test-model_parameters.mixed.R:2:1', 'test-model_parameters.nnet.R:5:1', 'test-model_parameters.vgam.R:3:1', 'test-model_parameters_df.R:1:1', 'test-model_parameters_ordinal.R:1:1', 'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1', 'test-model_parameters_std_mixed.R:3:1', 'test-n_factors.R:10:3', 'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1', 'test-p_direction.R:1:1', 'test-p_significance.R:1:1', 'test-p_value.R:14:1', 'test-panelr.R:1:1', 'test-pipe.R:1:1', 'test-pca.R:66:3', 'test-plm.R:111:3', 'test-posterior.R:2:1', 'test-pool_parameters.R:11:3', 'test-pool_parameters.R:32:1', 'test-print_AER_labels.R:11:5', 'test-pretty_names.R:65:5', 'test-printing-stan.R:2:1', 'test-printing.R:1:1', 'test-quantreg.R:1:1', 'test-random_effects_ci.R:4:1', 'test-robust.R:2:1', 'test-rstanarm.R:3:1', 'test-serp.R:16:5', 'test-printing2.R:15:7', 'test-printing2.R:22:7', 'test-printing2.R:27:7', 'test-printing2.R:32:7', 'test-printing2.R:37:7', 'test-printing2.R:49:7', 'test-printing2.R:91:7', 'test-printing2.R:127:7', 'test-svylme.R:1:1', 'test-visualisation_recipe.R:7:3', 'test-weightit.R:23:3', 'test-weightit.R:43:3', 'test-standardize_parameters.R:31:3', 'test-standardize_parameters.R:36:3', 'test-standardize_parameters.R:61:3', 'test-standardize_parameters.R:175:3', 'test-standardize_parameters.R:300:3', 'test-standardize_parameters.R:334:3', 'test-standardize_parameters.R:428:3', 'test-standardize_parameters.R:518:3' • On Linux (5): 'test-model_parameters.BFBayesFactor.R:1:1', 'test-nestedLogit.R:78:3', 'test-random_effects_ci-glmmTMB.R:3:1', 'test-simulate_model.R:1:1', 'test-simulate_parameters.R:1:1' • TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3' • TODO: this one actually is not correct. (1): 'test-model_parameters_robust.R:127:3' • empty test (5): 'test-wrs2.R:8:1', 'test-wrs2.R:18:1', 'test-wrs2.R:30:1', 'test-wrs2.R:43:1', 'test-wrs2.R:55:1' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-dominance_analysis.R:6:1'): (code run outside of `test_that()`) ── Error in `eval(expr[[3]])`: object 'da_df_cdl' not found Backtrace: ▆ 1. └─parameters::dominance_analysis(DA_test_model) at test-dominance_analysis.R:6:1 2. └─datawizard::data_rename(...) 3. └─datawizard:::.select_nse(...) 4. └─datawizard:::.eval_expr(...) 5. └─datawizard:::.eval_call(...) 6. └─datawizard:::.select_square_bracket(...) [ FAIL 1 | WARN 5 | SKIP 116 | PASS 655 ] Deleting unused snapshots: • equivalence_test/equivalence-test-1.svg • equivalence_test/equivalence-test-2.svg • equivalence_test/equivalence-test-3.svg • equivalence_test/equivalence-test-4.svg • equivalence_test/equivalence-test-5.svg Error: Test failures Execution halted Package: performance Check: examples New result: ERROR Running examples in ‘performance-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: check_collinearity > ### Title: Check for multicollinearity of model terms > ### Aliases: check_collinearity multicollinearity > ### check_collinearity.default check_collinearity.glmmTMB > ### check_concurvity > > ### ** Examples > > m <- lm(mpg ~ wt + cyl + gear + disp, data = mtcars) > check_collinearity(m) # Check for Multicollinearity Warning: Argument `pattern` is deprecated. Please use `select` instead. Low Correlation Term VIF VIF 95% CI Increased SE Tolerance Tolerance 95% CI gear 1.53 [1.19, 2.51] 1.24 0.65 [0.40, 0.84] Moderate Correlation Term VIF VIF 95% CI Increased SE Tolerance Tolerance 95% CI wt 5.05 [3.21, 8.41] 2.25 0.20 [0.12, 0.31] cyl 5.41 [3.42, 9.04] 2.33 0.18 [0.11, 0.29] disp 9.97 [6.08, 16.85] 3.16 0.10 [0.06, 0.16] > > ## Don't show: > if (require("see")) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf + ## End(Don't show) + # plot results + x <- check_collinearity(m) + plot(x) + ## Don't show: + }) # examplesIf Loading required package: see > x <- check_collinearity(m) > plot(x) Warning: Argument `pattern` is deprecated. Please use `select` instead. Error: Following variable(s) were not found: Component Possibly misspelled? Execution halted Package: phenofit Check: tests New result: ERROR Running ‘testthat.R’ [64s/65s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(phenofit) > > test_check("phenofit") List of 5 $ AG : tibble [6 × 8] (S3: tbl_df/tbl/data.frame) $ Beck : tibble [6 × 7] (S3: tbl_df/tbl/data.frame) $ Elmore: tibble [6 × 8] (S3: tbl_df/tbl/data.frame) $ Gu : tibble [6 × 10] (S3: tbl_df/tbl/data.frame) $ Zhang : tibble [6 × 8] (S3: tbl_df/tbl/data.frame) NULL # A tibble: 6 × 8 flag t0 mn mx rsp a3 rau a5 1 1999_1 -135. 0.201 0.636 0.00932 2.85 0.00852 2 2 2000_1 189. 0.238 0.635 0.0126 2.47 0.00801 3.21 3 2001_1 569. 0.252 0.626 0.0108 2.96 0.00950 2.96 4 2002_1 892. 0.253 0.614 0.0159 2 0.00724 3.08 5 2003_1 1268. 0.236 0.577 0.0121 2.88 0.00723 2.88 6 2004_1 1677. 0.202 0.576 0.00832 2.84 0.00990 3.48 meth R2 NSE R RMSE pvalue n_sim 1: AG 0.9986908 0.9985845 0.9993452 9.940385e-03 4.489925e-65 46 2: Beck 1.0000000 1.0000000 1.0000000 1.389780e-09 0.000000e+00 46 3: Elmore 1.0000000 1.0000000 1.0000000 4.161813e-10 0.000000e+00 46 4: Gu 1.0000000 1.0000000 1.0000000 4.891365e-11 0.000000e+00 46 5: Zhang 1.0000000 1.0000000 1.0000000 5.529073e-06 8.043461e-208 46 $AG formula: mn + (mx - mn) * exp(-((t0 - t) * rsp)^a3) formula: mn + (mx - mn) * exp(-((t - t0) * rau)^a5) pars: t0 mn mx rsp a3 rau a5 nlminb 149.8926 0.1020656 0.7095242 0.009389263 6 0.009367765 6 warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.65502e-16); attempting approx solution warning: solve(): system is singular (rcond: 2.19427e-17); attempting approx solution warning: solve(): system is singular (rcond: 1.65502e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.33432e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.03034e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.33432e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.08395e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.36432e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 6.97437e-18); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.85037e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.80681e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.43896e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.05447e-17); attempting approx solution warning: solve(): system is singular (rcond: 2.11109e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 6.04329e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.85037e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.80681e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.43896e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.94249e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.84957e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 8.58712e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.09346e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.82199e-17); attempting approx solution warning: solve(): system is singular (rcond: 2.38705e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.88785e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.85037e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 7.40149e-17); attempting approx solution warning: solve(): system is singular (rcond: 6.20634e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.05447e-17); attempting approx solution warning: solve(): system is singular (rcond: 2.11109e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.43896e-17); attempting approx solution warning: solve(): system is singular (rcond: 4.38854e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.00786e-16); attempting approx solution warning: solve(): system is singular (rcond: 1.46031e-17); attempting approx solution warning: solve(): system is singular (rcond: 5.02097e-17); attempting approx solution warning: solve(): system is singular (rcond: 1.25524e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution [ FAIL 1 | WARN 2 | SKIP 0 | PASS 69 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-curvefit.R:18:5'): curvefit works ──────────────────────────── all.equal(p1, p2, tolerance = 1e-06) is not TRUE `actual` is a character vector ('Component "Elmore": Component "mn": Mean relative difference: 1.990404e-06') `expected` is a logical vector (TRUE) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 69 ] Error: Test failures Execution halted Package: pmparser Check: tests New result: ERROR Running ‘testthat.R’ [30m/30m] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(pmparser) > > test_check('pmparser') trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed//baseline/pubmed25n1274.xml.gz.md5' Content type 'application/x-gzip' length 60 bytes ================================================== downloaded 60 bytes trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/pubmed25n1274.xml.gz' Content type 'application/x-gzip' length 21991622 bytes (21.0 MB) ================================================== downloaded 21.0 MB trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed//updatefiles/pubmed25n1275.xml.gz.md5' Content type 'application/x-gzip' length 60 bytes ================================================== downloaded 60 bytes trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed/updatefiles/pubmed25n1275.xml.gz' Content type 'application/x-gzip' length 87446753 bytes (83.4 MB) ================================================== downloaded 83.4 MB trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed//baseline/pubmed25n1274.xml.gz.md5' Content type 'application/x-gzip' length 60 bytes ================================================== downloaded 60 bytes trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed/baseline/pubmed25n1274.xml.gz' Content type 'application/x-gzip' length 21991622 bytes (21.0 MB) ================================================== downloaded 21.0 MB trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed//updatefiles/pubmed25n1275.xml.gz.md5' Content type 'application/x-gzip' length 60 bytes ================================================== downloaded 60 bytes trying URL 'https://ftp.ncbi.nlm.nih.gov/pubmed/updatefiles/pubmed25n1275.xml.gz' Content type 'application/x-gzip' length 87446753 bytes (83.4 MB) ================================================== downloaded 83.4 MB Execution halted Package: psycModel Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘brief-introduction-to-select-syntax.Rmd’ using rmarkdown --- finished re-building ‘brief-introduction-to-select-syntax.Rmd’ --- re-building ‘quick-introduction.Rmd’ using rmarkdown Quitting from lines 50-61 [unnamed-chunk-2] (quick-introduction.Rmd) Error: processing vignette 'quick-introduction.Rmd' failed with diagnostics: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lm` are not yet supported. --- failed re-building ‘quick-introduction.Rmd’ SUMMARY: processing the following file failed: ‘quick-introduction.Rmd’ Error: Vignette re-building failed. Execution halted Package: psycModel Check: tests New result: ERROR Running ‘testthat.R’ [25s/25s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(psycModel) > > test_check("psycModel") Loading required namespace: gridExtra Loading required namespace: qqplotr Loading required namespace: see [ FAIL 5 | WARN 2 | SKIP 0 | PASS 47 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-integrated-model-summary.R:2:3'): lm_model_summary: lm model ─── Error: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lm` are not yet supported. Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-integrated-model-summary.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─psycModel::lm_model_summary(...) 4. └─psycModel::model_summary(...) 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ── Error ('test-integrated-multilevel-model-summary.R:2:3'): lme_multilevel_model_summary: lme4 model ── Error: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lmerMod` are not yet supported. Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-integrated-multilevel-model-summary.R:2:3 2. │ └─base::withCallingHandlers(...) 3. └─psycModel::lme_multilevel_model_summary(...) 4. └─psycModel::model_summary(...) 5. └─base::tryCatch(...) 6. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 7. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 8. └─value[[3L]](cond) ── Error ('test-model-summary.R:9:3'): model_summary: lm model ───────────────── Error: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lm` are not yet supported. Backtrace: ▆ 1. └─psycModel::model_summary(...) at test-model-summary.R:9:3 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ── Error ('test-model-summary.R:82:3'): model_summary: lmerTest model ────────── Error: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lmerModLmerTest` are not yet supported. Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-model-summary.R:82:3 2. │ └─base::withCallingHandlers(...) 3. └─psycModel::model_summary(...) 4. └─base::tryCatch(...) 5. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. └─value[[3L]](cond) ── Error ('test-model-summary.R:102:3'): model_summary: lme4 model ───────────── Error: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lmerMod` are not yet supported. Backtrace: ▆ 1. ├─base::suppressWarnings(...) at test-model-summary.R:102:3 2. │ └─base::withCallingHandlers(...) 3. └─psycModel::model_summary(...) 4. └─base::tryCatch(...) 5. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 6. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 7. └─value[[3L]](cond) [ FAIL 5 | WARN 2 | SKIP 0 | PASS 47 ] Error: Test failures Execution halted Package: recipes Check: Rd cross-references New result: NOTE Unknown package ‘dimRed’ in Rd xrefs Package: rempsyc Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘assumptions.Rmd’ using rmarkdown Quitting from lines 55-57 [unnamed-chunk-3] (assumptions.Rmd) Error: processing vignette 'assumptions.Rmd' failed with diagnostics: `check_model()` returned following error: Following variable(s) were not found: Component Possibly misspelled? If the error message does not help identifying your problem, another reason why `check_model()` failed might be that models of class `lm` are not yet supported. --- failed re-building ‘assumptions.Rmd’ --- re-building ‘circles.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-4-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 13568 bytes Input file size = 14438 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12053 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12053 Output IDAT size = 12053 bytes (1515 bytes decrease) Output file size = 12131 bytes (2307 bytes = 15.98% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-5-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15963 bytes Input file size = 16833 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14129 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14129 Output IDAT size = 14129 bytes (1834 bytes decrease) Output file size = 14207 bytes (2626 bytes = 15.60% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-6-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 20048 bytes Input file size = 20930 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17997 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17997 Output IDAT size = 17997 bytes (2051 bytes decrease) Output file size = 18075 bytes (2855 bytes = 13.64% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-7-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15767 bytes Input file size = 16637 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14054 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14054 Output IDAT size = 14054 bytes (1713 bytes decrease) Output file size = 14132 bytes (2505 bytes = 15.06% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-8-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15963 bytes Input file size = 16833 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14129 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14129 Output IDAT size = 14129 bytes (1834 bytes decrease) Output file size = 14207 bytes (2626 bytes = 15.60% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-10-1.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17206 bytes Input file size = 18088 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15286 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15286 Output IDAT size = 15286 bytes (1920 bytes decrease) Output file size = 15364 bytes (2724 bytes = 15.06% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-10-2.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 16887 bytes Input file size = 17769 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15018 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 15017 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 15017 Output IDAT size = 15017 bytes (1870 bytes decrease) Output file size = 15095 bytes (2674 bytes = 15.05% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/circles_files/figure-html/unnamed-chunk-10-3.png 576x576 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 17207 bytes Input file size = 18089 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15282 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15282 Output IDAT size = 15282 bytes (1925 bytes decrease) Output file size = 15360 bytes (2729 bytes = 15.09% decrease) --- finished re-building ‘circles.Rmd’ --- re-building ‘contrasts.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/contrasts_files/figure-html/unnamed-chunk-6-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40820 bytes Input file size = 40946 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34194 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34194 Output IDAT size = 34194 bytes (6626 bytes decrease) Output file size = 34272 bytes (6674 bytes = 16.30% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/contrasts_files/figure-html/unnamed-chunk-17-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51179 bytes Input file size = 51329 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44989 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 44989 Output IDAT size = 44989 bytes (6190 bytes decrease) Output file size = 45067 bytes (6262 bytes = 12.20% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/contrasts_files/figure-html/unnamed-chunk-18-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 51005 bytes Input file size = 51155 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46377 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 46377 Output IDAT size = 46377 bytes (4628 bytes decrease) Output file size = 46455 bytes (4700 bytes = 9.19% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/contrasts_files/figure-html/unnamed-chunk-19-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 55719 bytes Input file size = 55869 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47768 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 47768 Output IDAT size = 47768 bytes (7951 bytes decrease) Output file size = 47846 bytes (8023 bytes = 14.36% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/contrasts_files/figure-html/unnamed-chunk-20-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 49613 bytes Input file size = 49763 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42164 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 42164 Output IDAT size = 42164 bytes (7449 bytes decrease) Output file size = 42242 bytes (7521 bytes = 15.11% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/contrasts_files/figure-html/unnamed-chunk-21-1.png 1344x1344 pixels, 3x8 bits/pixel, RGB Input IDAT size = 200376 bytes Input file size = 200742 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 173834 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 173834 Output IDAT size = 173834 bytes (26542 bytes decrease) Output file size = 173912 bytes (26830 bytes = 13.37% decrease) --- finished re-building ‘contrasts.Rmd’ --- re-building ‘moderation.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/moderation_files/figure-html/unnamed-chunk-12-1.png 480x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16203 bytes Input file size = 16293 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12924 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 12924 Output IDAT size = 12924 bytes (3279 bytes decrease) Output file size = 13002 bytes (3291 bytes = 20.20% decrease) --- finished re-building ‘moderation.Rmd’ --- re-building ‘randomize.Rmd’ using rmarkdown --- finished re-building ‘randomize.Rmd’ --- re-building ‘scatter.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-4-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21657 bytes Input file size = 21759 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16036 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16036 Output IDAT size = 16036 bytes (5621 bytes decrease) Output file size = 16114 bytes (5645 bytes = 25.94% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-6-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30308 bytes Input file size = 30422 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22697 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22697 Output IDAT size = 22697 bytes (7611 bytes decrease) Output file size = 22775 bytes (7647 bytes = 25.14% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-7-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20363 bytes Input file size = 20465 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14687 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14687 Output IDAT size = 14687 bytes (5676 bytes decrease) Output file size = 14765 bytes (5700 bytes = 27.85% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-8-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21292 bytes Input file size = 21394 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15930 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15930 Output IDAT size = 15930 bytes (5362 bytes decrease) Output file size = 16008 bytes (5386 bytes = 25.18% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-9-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20005 bytes Input file size = 20107 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14869 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14869 Output IDAT size = 14869 bytes (5136 bytes decrease) Output file size = 14947 bytes (5160 bytes = 25.66% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-10-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23568 bytes Input file size = 23670 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16929 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16929 Output IDAT size = 16929 bytes (6639 bytes decrease) Output file size = 17007 bytes (6663 bytes = 28.15% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-11-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22695 bytes Input file size = 22797 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17154 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17154 Output IDAT size = 17154 bytes (5541 bytes decrease) Output file size = 17232 bytes (5565 bytes = 24.41% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-12-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23105 bytes Input file size = 23207 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16897 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 16897 Output IDAT size = 16897 bytes (6208 bytes decrease) Output file size = 16975 bytes (6232 bytes = 26.85% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-13-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24616 bytes Input file size = 24730 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18473 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18473 Output IDAT size = 18473 bytes (6143 bytes decrease) Output file size = 18551 bytes (6179 bytes = 24.99% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-14-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24835 bytes Input file size = 24949 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18558 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18558 Output IDAT size = 18558 bytes (6277 bytes decrease) Output file size = 18636 bytes (6313 bytes = 25.30% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-15-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25512 bytes Input file size = 25626 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18835 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18835 Output IDAT size = 18835 bytes (6677 bytes decrease) Output file size = 18913 bytes (6713 bytes = 26.20% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-16-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30705 bytes Input file size = 30819 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23127 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23127 Output IDAT size = 23127 bytes (7578 bytes decrease) Output file size = 23205 bytes (7614 bytes = 24.71% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-17-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25967 bytes Input file size = 26081 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19116 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19116 Output IDAT size = 19116 bytes (6851 bytes decrease) Output file size = 19194 bytes (6887 bytes = 26.41% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-18-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30856 bytes Input file size = 30970 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23506 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23506 Output IDAT size = 23506 bytes (7350 bytes decrease) Output file size = 23584 bytes (7386 bytes = 23.85% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-19-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27960 bytes Input file size = 28074 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21109 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21109 Output IDAT size = 21109 bytes (6851 bytes decrease) Output file size = 21187 bytes (6887 bytes = 24.53% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-20-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26031 bytes Input file size = 26145 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19088 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19088 Output IDAT size = 19088 bytes (6943 bytes decrease) Output file size = 19166 bytes (6979 bytes = 26.69% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-21-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25573 bytes Input file size = 25687 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19061 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19061 Output IDAT size = 19061 bytes (6512 bytes decrease) Output file size = 19139 bytes (6548 bytes = 25.49% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-22-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25404 bytes Input file size = 25518 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18836 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18836 Output IDAT size = 18836 bytes (6568 bytes decrease) Output file size = 18914 bytes (6604 bytes = 25.88% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-23-1.png 768x672 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11875 bytes Input file size = 12745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10362 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10299 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10299 Output IDAT size = 10299 bytes (1576 bytes decrease) Output file size = 10377 bytes (2368 bytes = 18.58% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-24-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 46159 bytes Input file size = 46297 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35311 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 35311 Output IDAT size = 35311 bytes (10848 bytes decrease) Output file size = 35389 bytes (10908 bytes = 23.56% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-26-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 31611 bytes Input file size = 31725 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22950 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22950 Output IDAT size = 22950 bytes (8661 bytes decrease) Output file size = 23028 bytes (8697 bytes = 27.41% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-27-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 32745 bytes Input file size = 32859 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23744 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23744 Output IDAT size = 23744 bytes (9001 bytes decrease) Output file size = 23822 bytes (9037 bytes = 27.50% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-28-1.png 768x672 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 9292 bytes Input file size = 10162 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7930 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7683 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7683 Output IDAT size = 7683 bytes (1609 bytes decrease) Output file size = 7761 bytes (2401 bytes = 23.63% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/scatter_files/figure-html/unnamed-chunk-29-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23178 bytes Input file size = 23280 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17167 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17167 Output IDAT size = 17167 bytes (6011 bytes decrease) Output file size = 17245 bytes (6035 bytes = 25.92% decrease) --- finished re-building ‘scatter.Rmd’ --- re-building ‘t-test.Rmd’ using rmarkdown --- finished re-building ‘t-test.Rmd’ --- re-building ‘table.Rmd’ using rmarkdown --- finished re-building ‘table.Rmd’ --- re-building ‘violin.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-4-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33793 bytes Input file size = 33919 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29838 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29838 Output IDAT size = 29838 bytes (3955 bytes decrease) Output file size = 29916 bytes (4003 bytes = 11.80% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-6-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 41247 bytes Input file size = 41385 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34614 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34614 Output IDAT size = 34614 bytes (6633 bytes decrease) Output file size = 34692 bytes (6693 bytes = 16.17% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-7-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33483 bytes Input file size = 33609 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29375 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29375 Output IDAT size = 29375 bytes (4108 bytes decrease) Output file size = 29453 bytes (4156 bytes = 12.37% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-8-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33443 bytes Input file size = 33569 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29376 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29376 Output IDAT size = 29376 bytes (4067 bytes decrease) Output file size = 29454 bytes (4115 bytes = 12.26% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-9-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33750 bytes Input file size = 33876 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28765 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28765 Output IDAT size = 28765 bytes (4985 bytes decrease) Output file size = 28843 bytes (5033 bytes = 14.86% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-10-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33125 bytes Input file size = 33251 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28998 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 28998 Output IDAT size = 28998 bytes (4127 bytes decrease) Output file size = 29076 bytes (4175 bytes = 12.56% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-11-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 34000 bytes Input file size = 34126 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30195 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30195 Output IDAT size = 30195 bytes (3805 bytes decrease) Output file size = 30273 bytes (3853 bytes = 11.29% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-12-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35534 bytes Input file size = 35660 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31293 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31293 Output IDAT size = 31293 bytes (4241 bytes decrease) Output file size = 31371 bytes (4289 bytes = 12.03% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-13-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 33350 bytes Input file size = 33476 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29185 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29185 Output IDAT size = 29185 bytes (4165 bytes decrease) Output file size = 29263 bytes (4213 bytes = 12.59% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-14-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30301 bytes Input file size = 30415 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27276 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 27276 Output IDAT size = 27276 bytes (3025 bytes decrease) Output file size = 27354 bytes (3061 bytes = 10.06% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-15-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36367 bytes Input file size = 36493 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31406 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 31406 Output IDAT size = 31406 bytes (4961 bytes decrease) Output file size = 31484 bytes (5009 bytes = 13.73% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-16-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 47463 bytes Input file size = 47601 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 44613 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 44613 Output IDAT size = 44613 bytes (2850 bytes decrease) Output file size = 44691 bytes (2910 bytes = 6.11% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-17-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 35264 bytes Input file size = 35390 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30245 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 30245 Output IDAT size = 30245 bytes (5019 bytes decrease) Output file size = 30323 bytes (5067 bytes = 14.32% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-18-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20964 bytes Input file size = 21066 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18839 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 18839 Output IDAT size = 18839 bytes (2125 bytes decrease) Output file size = 18917 bytes (2149 bytes = 10.20% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-19-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 44328 bytes Input file size = 44466 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34572 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 34572 Output IDAT size = 34572 bytes (9756 bytes decrease) Output file size = 34650 bytes (9816 bytes = 22.08% decrease) ** Processing: /home/hornik/tmp/CRAN_recheck/rempsyc.Rcheck/vign_test/rempsyc/vignettes/violin_files/figure-html/unnamed-chunk-21-1.png 768x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 58386 bytes Input file size = 58548 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 55138 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 55138 Output IDAT size = 55138 bytes (3248 bytes decrease) Output file size = 55216 bytes (3332 bytes = 5.69% decrease) --- finished re-building ‘violin.Rmd’ SUMMARY: processing the following file failed: ‘assumptions.Rmd’ Error: Vignette re-building failed. Execution halted Package: see Check: examples New result: ERROR Running examples in ‘see-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: plot.see_check_collinearity > ### Title: Plot method for multicollinearity checks > ### Aliases: plot.see_check_collinearity > > ### ** Examples > > library(performance) > m <- lm(mpg ~ wt + cyl + gear + disp, data = mtcars) > result <- check_collinearity(m) > result # Check for Multicollinearity Warning: Argument `pattern` is deprecated. Please use `select` instead. Low Correlation Term VIF VIF 95% CI Increased SE Tolerance Tolerance 95% CI gear 1.53 [1.19, 2.51] 1.24 0.65 [0.40, 0.84] Moderate Correlation Term VIF VIF 95% CI Increased SE Tolerance Tolerance 95% CI wt 5.05 [3.21, 8.41] 2.25 0.20 [0.12, 0.31] cyl 5.41 [3.42, 9.04] 2.33 0.18 [0.11, 0.29] disp 9.97 [6.08, 16.85] 3.16 0.10 [0.06, 0.16] > plot(result) Warning: Argument `pattern` is deprecated. Please use `select` instead. Error: Following variable(s) were not found: Component Possibly misspelled? Execution halted Examples with CPU (user + system) or elapsed time > 5s user system elapsed add_plot_attributes 6.108 0.27 5.959 Package: see Check: tests New result: ERROR Running ‘testthat.R’ [53s/27s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # graphics engine changed in R 4.3, and so snapshots generated on > # previous R version won't work with later R releases > if (require("testthat", quietly = TRUE) && require("vdiffr", quietly = TRUE) && getRversion() >= "4.4.0") { + library(testthat) + library(see) + + test_check("see") + } Starting 2 test processes [ FAIL 1 | WARN 2 | SKIP 17 | PASS 32 ] ══ Skipped tests (17) ══════════════════════════════════════════════════════════ • On CRAN (17): 'test-check_model.R:2:3', 'test-plot.check_normality.R:18:3', 'test-plot.compare_parameters.R:20:3', 'test-plot.effectsize_table.R:5:3', 'test-plot.check_dag.R:17:3', 'test-plot.check_dag.R:68:3', 'test-plot.check_dag.R:90:3', 'test-plot.p_direction.R:11:1', 'test-plot.p_significance.R:11:1', 'test-plot.n_factors.R:7:3', 'test-plot.performance_roc.R:14:3', 'test-plot.performance_pp_check.R:6:3', 'test-scale_color_colorhex_c.R:3:3', 'test-vdiffr_bayestestr_plots.R:11:3', 'test-vdiffr_geoms_coords.R:13:3', 'test-vdiffr_scale_color.R:2:3', 'test-vdiffr_themes.R:11:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plot.check_collinearity.R:5:3'): `plot.see_check_collinearity()` works ── Error: Following variable(s) were not found: Component Possibly misspelled? Backtrace: ▆ 1. ├─testthat::expect_s3_class(plot(result), "gg") at test-plot.check_collinearity.R:5:3 2. │ └─testthat::quasi_label(enquo(object), arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::plot(result) 5. ├─performance:::plot.check_collinearity(result) 6. ├─base::NextMethod() 7. └─see:::plot.see_check_collinearity(result) 8. └─datawizard::data_rename(...) 9. └─datawizard:::.select_nse(...) 10. └─datawizard:::.eval_expr(...) 11. └─datawizard:::.select_char(...) 12. └─datawizard:::.action_if_not_found(...) 13. └─insight::format_error(msg, msg2) 14. └─insight::format_alert(..., type = "error") [ FAIL 1 | WARN 2 | SKIP 17 | PASS 32 ] Error: Test failures Execution halted Package: snvecR Check: re-building of vignette outputs New result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘analyze_grid_td-ed.Rmd’ using rmarkdown Quitting from lines 100-116 [massive-compute] (analyze_grid_td-ed.Rmd) Error: processing vignette 'analyze_grid_td-ed.Rmd' failed with diagnostics: ℹ In argument: `sol = pmap(...)`. Caused by error in `pmap()`: ℹ In index: 1. Caused by error in `open.connection()`: ! cannot open the connection --- failed re-building ‘analyze_grid_td-ed.Rmd’ SUMMARY: processing the following file failed: ‘analyze_grid_td-ed.Rmd’ Error: Vignette re-building failed. Execution halted Package: snvecR Check: tests New result: ERROR Running ‘testthat.R’ [3s/103s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(snvecR) > > test_check("snvecR") i The astronomical solution "full-ZB18a" has not been downloaded. i Reading 'full-ZB18a.dat' from website . [ FAIL 6 | WARN 7 | SKIP 0 | PASS 26 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-get_solution.R:13:3'): get_solution() can load eccentricity solutions ── Error in `open.connection(con, "rb")`: cannot open the connection Backtrace: ▆ 1. └─testthat::expect_snapshot(...) at test-get_solution.R:13:3 2. └─rlang::cnd_signal(state$error) ── Error ('test-get_solution.R:22:3'): get_solution() can load full solutions ── Error in `open.connection(con, "rb")`: cannot open the connection Backtrace: ▆ 1. └─testthat::expect_snapshot(...) at test-get_solution.R:22:3 2. └─rlang::cnd_signal(state$error) ── Error ('test-snvec.R:20:3'): snvec() inputs are checked ───────────────────── Error in `open.connection(con, "rb")`: cannot open the connection Backtrace: ▆ 1. ├─testthat::expect_warning(...) at test-snvec.R:20:3 2. │ └─testthat:::expect_condition_matching(...) 3. │ └─testthat:::quasi_capture(...) 4. │ ├─testthat (local) .capture(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo)) 7. └─snvecR::snvec(ed = 1.1001, tend = -1, tres = -0.5, quiet = TRUE) 8. └─snvecR::get_solution(...) 9. └─snvecR:::get_ZB(astronomical_solution, quiet = quiet, force = force) 10. └─readr::read_table(...) 11. └─readr:::read_delimited(...) 12. └─readr:::datasource_connection(file, skip, skip_empty_rows, comment) 13. └─readr:::read_connection(path) 14. ├─base::open(con, "rb") 15. └─base::open.connection(con, "rb") ── Error ('test-snvec.R:34:3'): snvec() works ────────────────────────────────── Error in `open.connection(con, "rb")`: cannot open the connection Backtrace: ▆ 1. └─testthat::expect_snapshot(...) at test-snvec.R:34:3 2. └─rlang::cnd_signal(state$error) ── Error ('test-snvec.R:60:3'): snvec() output columns are correct ───────────── Error in `open.connection(con, "rb")`: cannot open the connection Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-snvec.R:60:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─base::colnames(snvec(tend = -1, tres = -0.5, quiet = TRUE, output = "nice")) 5. │ └─base::is.data.frame(x) 6. └─snvecR::snvec(tend = -1, tres = -0.5, quiet = TRUE, output = "nice") 7. └─snvecR::get_solution(...) 8. └─snvecR:::get_ZB(astronomical_solution, quiet = quiet, force = force) 9. └─readr::read_table(...) 10. └─readr:::read_delimited(...) 11. └─readr:::datasource_connection(file, skip, skip_empty_rows, comment) 12. └─readr:::read_connection(path) 13. ├─base::open(con, "rb") 14. └─base::open.connection(con, "rb") ── Error ('test-unwrap.R:5:3'): unwrap works ─────────────────────────────────── Error in `open.connection(con, "rb")`: cannot open the connection Backtrace: ▆ 1. ├─testthat::expect_equal(...) at test-unwrap.R:5:3 2. │ └─testthat::quasi_label(enquo(object), label, arg = "object") 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─snvecR:::unwrap(get_solution()$lan[1:6]) 5. └─snvecR::get_solution() 6. └─snvecR:::get_ZB(astronomical_solution, quiet = quiet, force = force) 7. └─readr::read_table(...) 8. └─readr:::read_delimited(...) 9. └─readr:::datasource_connection(file, skip, skip_empty_rows, comment) 10. └─readr:::read_connection(path) 11. ├─base::open(con, "rb") 12. └─base::open.connection(con, "rb") [ FAIL 6 | WARN 7 | SKIP 0 | PASS 26 ] Error: Test failures Execution halted Package: webdav Check: examples New result: ERROR Running examples in ‘webdav-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: webdav_create_directory > ### Title: Create a collection (directory) on a WebDAV server > ### Aliases: webdav_create_directory > > ### ** Examples > > > # Example usage with a public WebDAV server. > # Visit test_server$url link to view the results of the operation. > library(magrittr) > library(httr2) > test_server <- "https://www.webdavserver.com/" %>% + request() %>% + req_retry(max_tries = 3, max_seconds = 4, backoff = ~ 1) %>% + req_perform() %>% + try(silent = TRUE) > > # Create a directory on the WebDAV server > if (class(test_server) != "try-error") + webdav_create_directory(base_url = test_server$url, folder_path = "Test_Folder", verbose = TRUE) Folder path to create: Test_Folder Base URL: https://www.webdavserver.com/User8236682/Test_Folder Username: Not provided Request object created successfully. No authentication added. Error during directory creation: HTTP 500 Internal Server Error. Error in value[[3L]](cond) : Failed to create directory. Calls: webdav_create_directory ... tryCatch -> tryCatchList -> tryCatchOne -> Execution halted