Package: APCalign Check: tests New result: ERROR Running ‘testthat.R’ [2s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(APCalign) > > test_check("APCalign") Downloading... trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet' Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet' trying URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet' Internet or server may be down; error in downloading or reading the file: cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet' Loading resources into memory... ===========================Error in `FUN()`: ! In path: "/home/hornik/tmp/CRAN_recheck/APCalign.Rcheck/tests/testthat/helper.R" Caused by error in `UseMethod()`: ! no applicable method for 'rename' applied to an object of class "NULL" Backtrace: ▆ 1. ├─testthat::test_check("APCalign") 2. │ └─testthat::test_dir(...) 3. │ └─testthat:::test_files(...) 4. │ └─testthat:::test_files_serial(...) 5. │ └─testthat:::test_files_setup_state(...) 6. │ └─testthat::source_test_helpers(".", env) 7. │ └─testthat::source_dir(path, "^helper.*\\.[rR]$", env = env, wrap = FALSE) 8. │ └─base::lapply(...) 9. │ └─testthat (local) FUN(X[[i]], ...) 10. │ └─testthat::source_file(path, env = env, chdir = chdir, wrap = wrap) 11. │ ├─base::withCallingHandlers(...) 12. │ └─base::eval(exprs, env) 13. │ └─base::eval(exprs, env) 14. │ └─APCalign::load_taxonomic_resources(...) at tests/testthat/helper.R:5:3 15. │ └─... %>% ... 16. ├─dplyr::mutate(., genus = extract_genus(canonical_name), taxon_rank = standardise_taxon_rank(taxon_rank)) 17. ├─dplyr::rename(., dplyr::any_of(column_rename)) 18. └─base::.handleSimpleError(...) 19. └─testthat (local) h(simpleError(msg, call)) 20. └─rlang::abort(...) Warning messages: 1: In utils::download.file(url, path_to_file, mode = "wb") : cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apc.parquet': HTTP status was '404 Not Found' 2: In utils::download.file(url, path_to_file, mode = "wb") : cannot open URL 'https://github.com/traitecoevo/APCalign/releases/download/0.0.2.9000/apni.parquet': HTTP status was '404 Not Found' Execution halted Package: epiCo Check: tests New result: ERROR Running ‘testthat.R’ [47s/47s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(epiCo) > > test_check("epiCo") 1 codes are invalid. Remember that the circular plot does not distinguish by sex. Non-leaf weights ignored Non-leaf weights ignored Remember that the circular plot does not distinguish by sex. Non-leaf weights ignored Data prior to 2013-12-29 were not used for the endemic channel calculation. Data after2016-12-25 were not used for the endemic channel calculation. Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis. Significant municipalities are: 05148 with High-Low (incidence - spatial correlation) 05318 with High-High (incidence - spatial correlation) 05440 with High-Low (incidence - spatial correlation) 05615 with Low-Low (incidence - spatial correlation) Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis. Significant municipalities are: 05148 with High-Low (incidence - spatial correlation) 05318 with High-High (incidence - spatial correlation) 05440 with High-Low (incidence - spatial correlation) 05615 with Low-Low (incidence - spatial correlation) Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis. There are no influential municipalities to plot [ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ── Error in `expect_message(morans_index(incidence_object, threshold = 12, plot = TRUE), type = "list")`: Can't specify `...` without `pattern`. Backtrace: ▆ 1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3 2. └─testthat:::expect_condition_matching(...) 3. └─testthat:::cnd_matcher(...) 4. └─cli::cli_abort(...) 5. └─rlang::abort(...) [ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ] Error: Test failures Execution halted Package: FisPro Check: whether the namespace can be loaded with stated dependencies New result: WARNING Error in .doLoadActions(where, attach) : error in load action .__A__.1 for package FisPro: loadModule(module = "mf_module", what = TRUE, env = ns, loadNow = TRUE): Unable to load module "mf_module": use of NULL environment is defunct Calls: ... eval -> loadNamespace -> -> .doLoadActions Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. Package: lwgeom Check: tests New result: NOTE Running ‘azimuth.R’ [1s/1s] Comparing ‘azimuth.Rout’ to ‘azimuth.Rout.save’ ...5,7d4 < Warning message: < In fun(libname, pkgname) : < PROJ versions differ: lwgeom has 9.5.1 sf has 9.5.0 Running ‘dist.R’ [1s/1s] Comparing ‘dist.Rout’ to ‘dist.Rout.save’ ... OK Running ‘geod.R’ [1s/1s] Comparing ‘geod.Rout’ to ‘geod.Rout.save’ ...12,14d11 < Warning message: < In fun(libname, pkgname) : < PROJ versions differ: lwgeom has 9.5.1 sf has 9.5.0 Running ‘perimeter.R’ [1s/1s] Comparing ‘perimeter.Rout’ to ‘perimeter.Rout.save’ ...4,6d3 < Warning message: < In fun(libname, pkgname) : < PROJ versions differ: lwgeom has 9.5.1 sf has 9.5.0 Running ‘testthat.R’ [3s/3s] Comparing ‘testthat.Rout’ to ‘testthat.Rout.save’ ...6,8d5 < Warning message: < In fun(libname, pkgname) : < PROJ versions differ: lwgeom has 9.5.1 sf has 9.5.0 Running ‘twkb.R’ [1s/1s] Comparing ‘twkb.Rout’ to ‘twkb.Rout.save’ ...6,8d5 < Warning message: < In fun(libname, pkgname) : < PROJ versions differ: lwgeom has 9.5.1 sf has 9.5.0 Package: madrat Check: tests New result: ERROR Running ‘testthat.R’ [35s/37s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(madrat) Loading required package: magclass > > test_check("madrat") [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • On CRAN (7): 'test-calcOutput.R:23:3', 'test-calcOutput.R:114:3', 'test-metadataGFZ.R:2:3', 'test-puc.R:2:4', 'test-readSource.R:55:3', 'test-readSource.R:61:3', 'test-readSource.R:70:3' • {reshape2} is not installed (1): 'test-calcOutput.R:450:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-toolCountryFill.R:5:3'): toolCountryFill works as expected ─── y["DEU", , ] == 0 is not TRUE is(actual) | is(expected) [1] "magpie" - "logical" [1] [2] "array" - "vector" [2] [3] "structure" - "index" [3] [4] "vector" - "replValue" [4] - "numLike" [5] - "atomicVector" [6] `dim(actual)` is an integer vector (1, 1, 1) `dim(expected)` is absent `dimnames(actual)` is a list `dimnames(expected)` is absent ── Failure ('test-toolCountryFill.R:22:3'): toolCountryFill works as expected ── toolCountryFill(x3, 99, FRA = "DEU")["FRA", , ] == 42 is not TRUE is(actual) | is(expected) [1] "magpie" - "logical" [1] [2] "array" - "vector" [2] [3] "structure" - "index" [3] [4] "vector" - "replValue" [4] - "numLike" [5] - "atomicVector" [6] `dim(actual)` is an integer vector (1, 1, 1) `dim(expected)` is absent `dimnames(actual)` is a list `dimnames(expected)` is absent ── Failure ('test-toolCountryFill.R:24:3'): toolCountryFill works as expected ── y5["FRA", , ] == 0 is not TRUE is(actual) | is(expected) [1] "magpie" - "logical" [1] [2] "array" - "vector" [2] [3] "structure" - "index" [3] [4] "vector" - "replValue" [4] - "numLike" [5] - "atomicVector" [6] `dim(actual)` is an integer vector (1, 1, 1) `dim(expected)` is absent `dimnames(actual)` is a list `dimnames(expected)` is absent [ FAIL 3 | WARN 2 | SKIP 8 | PASS 581 ] Error: Test failures Execution halted Package: OPSR Check: tests New result: ERROR Running ‘testthat.R’ [24s/25s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(OPSR) Please cite the 'OPSR' package as: Heimgartner, D. and X. Wang (2024) OPSR: A package for estimating ordinal probit switching regression models in R. tbc. Wang, X. and P. L. Mokhtarian (2024) Examining the treatment effect of teleworking on vehicle-miles driven: Applying an ordered probit selection model and incorporating the role of travel stress, Transportation Research Part A, 186, 104072, doi:10.1016/j.tra.2024.104072. If you have questions, suggestions, or comments regarding the 'OPSR' package, please open an issue on https://github.com/dheimgartner/OPSR To see these entries in BibTeX format, use 'citation('OPSR')' > > test_check("OPSR") [ FAIL 1 | WARN 0 | SKIP 5 | PASS 58 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • Skipping (1): 'test-loglik_R.R:2:3' • empty test (3): 'test-predict.R:1:1', 'test-predict.R:15:1', 'test-predict.R:27:1' • opsr_check_omp() is TRUE (1): 'test-opsr.R:80:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-predict.R:102:3'): yields similar results to predict.lm if no error correlation ── `test` (`actual`) not equal to 1 (`expected`). `actual`: 0.988 `expected`: 1.000 [ FAIL 1 | WARN 0 | SKIP 5 | PASS 58 ] Error: Test failures Execution halted Package: phenofit Check: tests New result: ERROR Running ‘testthat.R’ [69s/69s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(phenofit) > > test_check("phenofit") List of 5 $ AG : tibble [6 × 8] (S3: tbl_df/tbl/data.frame) $ Beck : tibble [6 × 7] (S3: tbl_df/tbl/data.frame) $ Elmore: tibble [6 × 8] (S3: tbl_df/tbl/data.frame) $ Gu : tibble [6 × 10] (S3: tbl_df/tbl/data.frame) $ Zhang : tibble [6 × 8] (S3: tbl_df/tbl/data.frame) NULL # A tibble: 6 × 8 flag t0 mn mx rsp a3 rau a5 1 1999_1 -135. 0.201 0.636 0.00932 2.85 0.00852 2 2 2000_1 189. 0.238 0.635 0.0126 2.47 0.00801 3.21 3 2001_1 569. 0.252 0.626 0.0108 2.96 0.00950 2.96 4 2002_1 892. 0.253 0.614 0.0159 2 0.00724 3.08 5 2003_1 1268. 0.236 0.577 0.0121 2.88 0.00723 2.88 6 2004_1 1677. 0.202 0.576 0.00832 2.84 0.00990 3.48 meth R2 NSE R RMSE pvalue n_sim 1: AG 0.9986908 0.9985845 0.9993452 9.940385e-03 4.489925e-65 46 2: Beck 1.0000000 1.0000000 1.0000000 1.389780e-09 0.000000e+00 46 3: Elmore 1.0000000 1.0000000 1.0000000 4.161813e-10 0.000000e+00 46 4: Gu 1.0000000 1.0000000 1.0000000 4.891365e-11 0.000000e+00 46 5: Zhang 1.0000000 1.0000000 1.0000000 5.529073e-06 8.043461e-208 46 $AG formula: mn + (mx - mn) * exp(-((t0 - t) * rsp)^a3) formula: mn + (mx - mn) * exp(-((t - t0) * rau)^a5) pars: t0 mn mx rsp a3 rau a5 nlminb 149.8926 0.1020656 0.7095242 0.009389263 6 0.009367765 6 warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.65502e-16); attempting approx solution warning: solve(): system is singular (rcond: 2.19427e-17); attempting approx solution warning: solve(): system is singular (rcond: 1.65502e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.33432e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.03034e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.33432e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.08395e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.36432e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 6.97437e-18); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.85037e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.80681e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.43896e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.05447e-17); attempting approx solution warning: solve(): system is singular (rcond: 2.11109e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 6.04329e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.85037e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.80681e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.43896e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.94249e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.84957e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 8.58712e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.09346e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.82199e-17); attempting approx solution warning: solve(): system is singular (rcond: 2.38705e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.88785e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.85037e-16); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 7.40149e-17); attempting approx solution warning: solve(): system is singular (rcond: 6.20634e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 2.38811e-17); attempting approx solution warning: solve(): system is singular (rcond: 3.05447e-17); attempting approx solution warning: solve(): system is singular (rcond: 2.11109e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 5.43896e-17); attempting approx solution warning: solve(): system is singular (rcond: 4.38854e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 1.00786e-16); attempting approx solution warning: solve(): system is singular (rcond: 1.46031e-17); attempting approx solution warning: solve(): system is singular (rcond: 5.02097e-17); attempting approx solution warning: solve(): system is singular (rcond: 1.25524e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular; attempting approx solution warning: solve(): system is singular (rcond: 3.31005e-17); attempting approx solution [ FAIL 1 | WARN 2 | SKIP 0 | PASS 69 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-curvefit.R:18:5'): curvefit works ──────────────────────────── all.equal(p1, p2, tolerance = 1e-06) is not TRUE `actual` is a character vector ('Component "Elmore": Component "mn": Mean relative difference: 1.990404e-06') `expected` is a logical vector (TRUE) [ FAIL 1 | WARN 2 | SKIP 0 | PASS 69 ] Error: Test failures Execution halted Package: RKorAPClient Check: tests New result: ERROR Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("RKorAPClient") > > test_check("RKorAPClient") apiUrl: https://korap.ids-mannheim.de/api/v1.0/ [ FAIL 1 | WARN 0 | SKIP 30 | PASS 25 ] ══ Skipped tests (30) ══════════════════════════════════════════════════════════ • On CRAN (30): 'test-collocations.R:2:3', 'test-collocations.R:15:3', 'test-collocations.R:39:3', 'test-corpusQuery.R:2:3', 'test-corpusQuery.R:9:3', 'test-corpusQuery.R:21:3', 'test-corpusQuery.R:31:3', 'test-corpusQuery.R:43:3', 'test-corpusQuery.R:55:3', 'test-corpusQuery.R:62:3', 'test-corpusQuery.R:71:3', 'test-corpusQuery.R:77:3', 'test-corpusQuery.R:85:3', 'test-corpusQuery.R:93:3', 'test-corpusQuery.R:101:3', 'test-corpusStats.R:2:3', 'test-corpusStats.R:11:3', 'test-corpusStats.R:20:3', 'test-corpusStats.R:26:3', 'test-demos.R:2:3', 'test-demos.R:16:3', 'test-demos.R:31:3', 'test-demos.R:46:3', 'test-demos.R:61:3', 'test-demos.R:78:3', 'test-demos.R:94:3', 'test-demos.R:111:3', 'test-demos.R:129:3', 'test-textMetadata.R:2:3', 'test-textMetadata.R:9:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-KorAPConnection.R:10:3'): KorAPConnection fails gracefully on Bad Gateway errors ── `new(...)` produced unexpected messages. Expected match: No internet|Timeout|progress|json|502 Actual values: * 503 KorAP API request failed [ FAIL 1 | WARN 0 | SKIP 30 | PASS 25 ] Error: Test failures Execution halted Package: Runuran Check: tests New result: ERROR Running ‘run_testthat.R’ [3s/3s] Running ‘test_advanced.R’ [2s/2s] Running ‘test_deprecated.R’ [1s/1s] Running ‘test_distributions_cont.R’ [1s/1s] Running ‘test_distributions_discr.R’ [1s/1s] Running ‘test_routines.R’ [0s/0s] Running ‘test_ud.R’ [1s/1s] Running ‘test_universal.R’ [5s/5s] Running ‘test_unuran.R’ [4s/4s] Running the tests in ‘tests/test_distributions_cont.R’ failed. Complete output: > ############################################################################# > ## ## > ## Tests for wrapper functions for special distributions ## > ## ## > ############################################################################# > ## ## > ## Continuous univariate distributions ## > ## ## > ############################################################################# > ## ## > ## Remark: You must use named arguments when calling the test routines! ## > ## ## > ############################################################################# > > ## --- Load test routines and test parameters ------------------------------- > > source("test_routines.R") > > ## --- Chi^2 goodness-of-fit test ------------------------------------------- > > ## Beta distribution - (replacement for rbeta) ------------------------------ > for (i in 1:n.rep.domains) + unur.test.cont("beta", shape1=runif(1,0.2,10), shape2=runif(1,0.2,10), + domain=sort(runif(2))) beta(8.68487915950827,0.357812664331868) domain=(0.0694377,0.817693): chisq test PASSed with p-value=0.0452982 beta(4.39041330982,9.3161321464926) domain=(0.98426,0.990857): [UNU.RAN - error] (generator) (possible) invalid data: CDF not increasing Error: [UNU.RAN - error] cannot create UNU.RAN object Execution halted Package: tidysq Check: tests New result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [11s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Package: vines Check: tests New result: ERROR Running ‘testthat.R’ [2s/2s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library("testthat") > library("vines") Loading required package: copula > > test_check("vines", reporter = "summary") h: h: 1 hinverse: hinverse: 2 ══ Failed ══════════════════════════════════════════════════════════════════════ ── 1. Error ('test-h.R:3:1'): (code run outside of `test_that()`) ────────────── Error in `testthat:::test_code(new_desc, substitute(code), env = env)`: argument "reporter" is missing, with no default Backtrace: ▆ 1. └─vines:::test_that_for_each_copula(...) at test-h.R:3:1 2. └─testthat:::test_code(new_desc, substitute(code), env = env) at tests/testthat/helper-copulas.R:37:13 ── 2. Error ('test-hinverse.R:3:1'): (code run outside of `test_that()`) ─────── Error in `testthat:::test_code(new_desc, substitute(code), env = env)`: argument "reporter" is missing, with no default Backtrace: ▆ 1. └─vines:::test_that_for_each_copula(...) at test-hinverse.R:3:1 2. └─testthat:::test_code(new_desc, substitute(code), env = env) at tests/testthat/helper-copulas.R:37:13 ══ DONE ════════════════════════════════════════════════════════════════════════ Error: Test failures Execution halted Package: xpose Check: tests New result: ERROR Running ‘testthat.R’ [30s/30s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(xpose) Loading required package: ggplot2 Attaching package: 'xpose' The following object is masked from 'package:stats': filter > > test_check("xpose") [ FAIL 1 | WARN 0 | SKIP 8 | PASS 377 ] ══ Skipped tests (8) ═══════════════════════════════════════════════════════════ • On CRAN (8): 'test-model-summary.R:59:3', 'test-read_nm_files.R:54:3', 'test-read_nm_tables.R:61:3', 'test-read_nm_tables.R:71:3', 'test-vpc.R:50:3', 'test-xpose_data.R:31:3', 'test-xpose_data.R:47:3', 'test-xpose_save.R:22:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-plots.R:33:1'): (code run outside of `test_that()`) ──────────── Error in `purrr::map(X, function(x) { code_x <- substitute_q(code, list(.fun = as.symbol(x)) %>% purrr::set_names(paste0(".", name_x))) attr(code_x, "srcref") <- attr(code, "srcref") do.call(get("test_code", envir = asNamespace("testthat")), list(test = paste(desc, "for", name_x, x), code = code_x, env = envir), envir = envir) })`: ℹ In index: 1. Caused by error: ! argument "reporter" is missing, with no default Backtrace: ▆ 1. ├─xpose:::test_that_for_all(...) at test-plots.R:33:1 2. │ └─purrr::map(...) at tests/testthat/helper-test_that_for_all.R:13:3 3. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 4. │ ├─purrr:::with_indexed_errors(...) 5. │ │ └─base::withCallingHandlers(...) 6. │ ├─purrr:::call_with_cleanup(...) 7. │ └─xpose (local) .f(.x[[i]], ...) 8. │ └─base::do.call(...) at tests/testthat/helper-test_that_for_all.R:20:7 9. ├─testthat (local) ``(...) 10. └─purrr (local) ``(``) 11. └─cli::cli_abort(...) 12. └─rlang::abort(...) [ FAIL 1 | WARN 0 | SKIP 8 | PASS 377 ] Error: Test failures Execution halted