testthat::test_that("s_surv_timepoint works with default arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- s_surv_timepoint( adtte_f %>% dplyr::filter(ARMCD == "ARM B"), .var = "AVAL", time_point = 6, is_event = "is_event" ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("s_surv_timepoint works with customized arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- s_surv_timepoint( adtte_f %>% dplyr::filter(ARMCD == "ARM C"), .var = "AVAL", is_event = "is_event", time_point = 7, control = control_surv_timepoint( conf_level = 0.99, conf_type = "log" ) ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("s_surv_timepoint also works when there are 0 patients at risk", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) %>% # Only take patients from Arm A who have less than 6 months time point, # such that no patients are at risk anymore beyond 6 months. dplyr::filter(ARMCD == "ARM A", AVAL <= 6) result <- testthat::expect_silent(s_surv_timepoint( adtte_f, .var = "AVAL", time_point = 6, is_event = "is_event" )) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_timepoint works with default arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- basic_table() %>% split_cols_by( var = "ARMCD", ref_group = "ARM A" ) %>% surv_timepoint( vars = "AVAL", var_labels = "Months", time_point = 6, is_event = "is_event" ) %>% build_table(df = adtte_f) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_timepoint works with customized arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- basic_table() %>% split_cols_by( var = "ARMCD", ref_group = "ARM A" ) %>% surv_timepoint( vars = "AVAL", var_labels = "Months", time_point = 8, is_event = "is_event", control = control_surv_timepoint(conf_level = 0.9, conf_type = "log-log") ) %>% build_table(df = adtte_f) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("s_surv_timepoint_diff works with default arguments for comparison group", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) df <- adtte_f %>% dplyr::filter(ARMCD == "ARM A") df_ref <- adtte_f %>% dplyr::filter(ARMCD == "ARM B") result <- s_surv_timepoint_diff( df = df, .var = "AVAL", .ref_group = df_ref, .in_ref_col = FALSE, is_event = "is_event", time_point = 6, control = control_surv_timepoint() ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("s_surv_timepoint_diff works with customized arguments for comparison arm", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) df <- adtte_f %>% dplyr::filter(ARMCD == "ARM A") df_ref <- adtte_f %>% dplyr::filter(ARMCD == "ARM B") result <- s_surv_timepoint_diff( df = df, .var = "AVAL", .ref_group = df_ref, .in_ref_col = FALSE, time_point = 8, is_event = "is_event", control = control_surv_timepoint(conf_level = 0.9) ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_timepoint for survival diff works with default arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- basic_table() %>% split_cols_by( var = "ARMCD", ref_group = "ARM A" ) %>% surv_timepoint( vars = "AVAL", var_labels = "Months", time_point = 9, is_event = "is_event", method = "surv_diff" ) %>% build_table(df = adtte_f) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_timepoint for survival diff works with customized arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- basic_table() %>% split_cols_by( var = "ARMCD", ref_group = "ARM A" ) %>% surv_timepoint( vars = "AVAL", var_labels = "Months", time_point = 9, is_event = "is_event", method = "surv_diff", control = control_surv_timepoint(conf_level = 0.99) ) %>% build_table(df = adtte_f) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_timepoint works with method = both", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- testthat::expect_silent( basic_table() %>% split_cols_by(var = "ARMCD", ref_group = "ARM A") %>% add_colcounts() %>% surv_timepoint( vars = "AVAL", var_labels = "Months", is_event = "is_event", time_point = 9, method = "both" ) %>% build_table(df = adtte_f) ) testthat::expect_snapshot(result) })