testthat::test_that("s_surv_time works with default arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- s_surv_time( adtte_f %>% dplyr::filter(ARMCD == "ARM B"), .var = "AVAL", is_event = "is_event" ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("s_surv_time works with customized arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- s_surv_time( adtte_f %>% dplyr::filter(ARMCD == "ARM B"), .var = "AVAL", is_event = "is_event", control = control_surv_time( conf_level = 0.99, conf_type = "log-log", quantiles = c(0.2, 0.8) ) ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("a_surv_time works with default arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- a_surv_time( adtte_f, .df_row = df, .var = "AVAL", is_event = "is_event" ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("a_surv_time works with customized arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) %>% dplyr::filter(ARMCD == "ARM B") result <- a_surv_time( adtte_f, .var = "AVAL", is_event = "is_event", control = control_surv_time( conf_level = 0.99, conf_type = "log-log", quantiles = c(0.2, 0.8) ), .df_row = adtte_f, .stats = c("median_ci", "quantiles", "range"), .formats = c(median_ci = "auto", quantiles = "xx.xx / xx.xx"), .labels = c(median_ci = "median conf int"), .indent_mods = c(median_ci = 3L) ) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_time works with default arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- basic_table() %>% split_cols_by( var = "ARMCD" ) %>% surv_time( vars = "AVAL", var_labels = "Survival Time (Months)", is_event = "is_event" ) %>% build_table(df = adtte_f) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_time works with customized arguments", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) result <- basic_table() %>% split_cols_by(var = "ARMCD") %>% surv_time( vars = "AVAL", var_labels = "Survival Time (Months)", is_event = "is_event", .stats = get_stats("surv_time"), control = control_surv_time(conf_level = 0.9, conf_type = "log", quantiles = c(0.4, 0.6)) ) %>% build_table(df = adtte_f) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("surv_time works with referential footnotes", { adtte_f <- tern_ex_adtte %>% dplyr::filter(PARAMCD == "OS") %>% dplyr::mutate( AVAL = day2month(AVAL), is_event = CNSR == 0 ) adtte_f$is_event[adtte_f$AVAL == min(adtte_f[adtte_f$ARMCD == "ARM A", ]$AVAL) & adtte_f$ARMCD == "ARM A"] <- FALSE adtte_f$is_event[adtte_f$AVAL == min(adtte_f[adtte_f$ARMCD == "ARM B", ]$AVAL) & adtte_f$ARMCD == "ARM B"] <- FALSE adtte_f$is_event[adtte_f$AVAL == max(adtte_f[adtte_f$ARMCD == "ARM B", ]$AVAL) & adtte_f$ARMCD == "ARM B"] <- FALSE adtte_f$is_event[adtte_f$AVAL == max(adtte_f[adtte_f$ARMCD == "ARM C", ]$AVAL) & adtte_f$ARMCD == "ARM C"] <- FALSE result <- basic_table() %>% split_cols_by(var = "ARMCD") %>% add_overall_col(label = "All") %>% surv_time( vars = "AVAL", is_event = "is_event" ) %>% build_table(df = adtte_f) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("a_surv_time works when `is_event` only has TRUE observations", { anl <- tibble::tribble( ~AVAL, ~ARM, ~is_event, 1, "A", TRUE, 2, "A", TRUE ) testthat::expect_silent( tern::a_surv_time(anl, .var = "AVAL", is_event = "is_event") ) }) testthat::test_that("a_surv_time works when `is_event` only has FALSE observations", { anl <- tibble::tribble( ~AVAL, ~ARM, ~is_event, 1, "A", FALSE, 2, "A", FALSE ) testthat::expect_silent( tern::a_surv_time(anl, .var = "AVAL", is_event = "is_event") ) })