testthat::test_that("univariate works correctly", { result <- testthat::expect_silent(univariate(c("SEX", "AGE", "RACE"))) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) suppressWarnings(testthat::expect_warning(result2 <- lm(SEX ~ univariate(ARM), data = tern_ex_adsl))) res2 <- testthat::expect_silent(result2) testthat::expect_snapshot(res2) }) testthat::test_that("rht works correctly", { result <- testthat::expect_silent(rht(as.formula("y ~ m * x + b"))) res <- testthat::expect_silent(result) testthat::expect_snapshot(res) }) testthat::test_that("estimate_coef works correctly", { adtte <- tern_ex_adtte %>% filter(PARAMCD == "PFS") %>% mutate( ARMCD = droplevels(ARMCD), SEX = droplevels(SEX) ) mod <- survival::coxph( formula = survival::Surv(time = AVAL, event = 1 - CNSR) ~ (SEX + ARMCD)^2, data = adtte ) mmat <- stats::model.matrix(mod)[1, ] mmat[!mmat == 0] <- 0 result <- estimate_coef( variable = "ARMCD", given = "SEX", lvl_var = "ARM A", lvl_given = "M", coef = stats::coef(mod), mmat = mmat, vcov = stats::vcov(mod), conf_level = .95 ) res <- testthat::expect_silent(result$ARMCD) testthat::expect_snapshot(res) res <- testthat::expect_silent(attr(result, "details")) testthat::expect_snapshot(res) }) testthat::test_that("try_car_anova works correctly", { mod <- survival::coxph( formula = survival::Surv(time = futime, event = fustat) ~ factor(rx) + survival::strata(ecog.ps), data = survival::ovarian ) result <- try_car_anova(mod = mod, test.statistic = "Wald") result_aov <- c(result$aov$Df, result$aov$Chisq, result$aov$`Pr(>Chisq)`) res <- testthat::expect_silent(result_aov) testthat::expect_snapshot(res) res <- testthat::expect_silent(result$warn_text) testthat::expect_snapshot(res) }) testthat::test_that("check_formula returns correct error", { testthat::expect_error(check_formula("y ~ m * x + b")) }) testthat::test_that("check_covariate_formulas works correctly", { testthat::expect_error(check_covariate_formulas(NULL)) }) testthat::test_that("name_covariate_names works correctly", { result <- name_covariate_names(c( A = formula("y ~ A"), B = formula("y ~ B"), C = formula("y ~ C") )) expected <- list(A = formula("y ~ A"), B = formula("y ~ B"), C = formula("y ~ C")) testthat::expect_identical(result, expected) }) testthat::test_that("check_increments gives correct warning", { testthat::expect_warning(check_increments(c(A = "A", B = "B", D = "C"), c( A = formula("y ~ A"), B = formula("y ~ B"), C = formula("y ~ C") ))) }) testthat::test_that("s_cox_multivariate works correctly with character input", { adtte_f <- tern_ex_adtte %>% subset(PARAMCD == "OS") %>% filter( PARAMCD == "OS" & SEX %in% c("F", "M") & RACE %in% c("ASIAN", "BLACK OR AFRICAN AMERICAN", "WHITE") ) %>% mutate( SEX = droplevels(SEX), RACE = droplevels(RACE), ARMCD = as.character(ARMCD) ) result <- s_cox_multivariate( formula = survival::Surv(time = AVAL, event = 1 - CNSR) ~ (ARMCD + RACE + AGE)^2, data = adtte_f ) res <- testthat::expect_silent(result$aov) testthat::expect_snapshot(res) })