downloading reverse dependencies ... downloading teal_1.0.0.tar.gz ... ok downloading teal.modules.clinical_0.11.1.tar.gz ... ok downloading teal.modules.general_0.5.1.tar.gz ... ok installing dependencies ‘ggplot2’, ‘MultiAssayExperiment’, ‘nestcolor’, ‘rlistings’, ‘roxy.shinylive’, ‘rtables.officer’, ‘shinyTree’, ‘shinyvalidate’, ‘sparkline’, ‘teal’, ‘teal.code’, ‘teal.data’, ‘teal.logger’, ‘teal.reporter’, ‘teal.slice’, ‘teal.transform’, ‘teal.widgets’, ‘tern’, ‘tern.gee’, ‘tern.mmrm’, ‘testthat’, ‘vistime’ also installing the dependencies ‘BiocBaseUtils’, ‘lzstring’, ‘geeasy’ begin installing package ‘BiocBaseUtils’ begin installing package ‘teal.code’ begin installing package ‘lzstring’ begin installing package ‘rlistings’ begin installing package ‘teal.logger’ begin installing package ‘shinyvalidate’ begin installing package ‘shinyTree’ begin installing package ‘sparkline’ begin installing package ‘ggplot2’ begin installing package ‘testthat’ * installing *source* package ‘BiocBaseUtils’ ... ** this is package ‘BiocBaseUtils’ version ‘1.12.0’ ** package ‘BiocBaseUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocBaseUtils) begin installing package ‘MultiAssayExperiment’ * installing *source* package ‘sparkline’ ... ** this is package ‘sparkline’ version ‘2.0’ ** package ‘sparkline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) * installing *source* package ‘shinyvalidate’ ... ** this is package ‘shinyvalidate’ version ‘0.1.3’ ** package ‘shinyvalidate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyvalidate) * installing *source* package ‘teal.logger’ ... ** this is package ‘teal.logger’ version ‘0.4.0’ ** package ‘teal.logger’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.logger) * installing *source* package ‘teal.code’ ... ** this is package ‘teal.code’ version ‘0.7.0’ ** package ‘teal.code’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.code) begin installing package ‘teal.data’ * installing *source* package ‘shinyTree’ ... ** this is package ‘shinyTree’ version ‘0.3.1’ ** package ‘shinyTree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shinyTree) * installing *source* package ‘rlistings’ ... ** this is package ‘rlistings’ version ‘0.2.12’ ** package ‘rlistings’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlistings) begin installing package ‘rtables.officer’ * installing *source* package ‘lzstring’ ... ** this is package ‘lzstring’ version ‘0.2.0’ ** package ‘lzstring’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTNhB4i/R.INSTALL10b36c2dd2644e/lzstring/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c code.cpp -o code.o In file included from code.cpp:4: lz-string.h: In function ‘lzstring::string lzstring::decompressFromEncodedURIComponent(const string&)’: lz-string.h:549:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 549 | for (int i = 0; i < keyStrUriSafe.length(); ++i) baseReverseDic[keyStrUriSafe.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~~ lz-string.h: In function ‘lzstring::string lzstring::decompressFromBase64(const string&)’: lz-string.h:574:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 574 | for (int i = 0; i < keyStrBase64.length(); ++i) baseReverseDic[keyStrBase64.at(i)] = i; | ~~^~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o lzstring.so code.o cpp11.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTNhB4i/R.INSTALL10b36c2dd2644e/lzstring/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-lzstring/00new/lzstring/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lzstring) begin installing package ‘roxy.shinylive’ * installing *source* package ‘teal.data’ ... ** this is package ‘teal.data’ version ‘0.8.0’ ** package ‘teal.data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.data) * installing *source* package ‘roxy.shinylive’ ... ** this is package ‘roxy.shinylive’ version ‘1.0.0’ ** package ‘roxy.shinylive’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxy.shinylive) * installing *source* package ‘rtables.officer’ ... ** this is package ‘rtables.officer’ version ‘0.1.1’ ** package ‘rtables.officer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rtables.officer) begin installing package ‘teal.reporter’ * installing *source* package ‘teal.reporter’ ... ** this is package ‘teal.reporter’ version ‘0.6.0’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.reporter) * installing *source* package ‘ggplot2’ ... ** this is package ‘ggplot2’ version ‘4.0.1’ ** package ‘ggplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2) begin installing package ‘geeasy’ begin installing package ‘teal.widgets’ begin installing package ‘vistime’ begin installing package ‘nestcolor’ * installing *source* package ‘nestcolor’ ... ** this is package ‘nestcolor’ version ‘0.1.3’ ** package ‘nestcolor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nestcolor) begin installing package ‘tern’ * installing *source* package ‘teal.widgets’ ... ** this is package ‘teal.widgets’ version ‘0.5.0’ ** package ‘teal.widgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.widgets) begin installing package ‘teal.slice’ begin installing package ‘teal.transform’ * installing *source* package ‘vistime’ ... ** this is package ‘vistime’ version ‘1.2.4’ ** package ‘vistime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vistime) * installing *source* package ‘MultiAssayExperiment’ ... ** this is package ‘MultiAssayExperiment’ version ‘1.36.0’ ** package ‘MultiAssayExperiment’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiAssayExperiment) * installing *source* package ‘teal.transform’ ... ** this is package ‘teal.transform’ version ‘0.7.0’ ** package ‘teal.transform’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.transform) * installing *source* package ‘geeasy’ ... ** this is package ‘geeasy’ version ‘0.1.3’ ** package ‘geeasy’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geeasy) * installing *source* package ‘testthat’ ... ** this is package ‘testthat’ version ‘3.3.0’ ** package ‘testthat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-7) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-7) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7EqaB6/R.INSTALL10b37b2ba1968b/testthat/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-catch.cpp -o test-catch.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-example.cpp -o test-example.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o testthat.so init.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7EqaB6/R.INSTALL10b37b2ba1968b/testthat/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) * installing *source* package ‘teal.slice’ ... ** this is package ‘teal.slice’ version ‘0.7.0’ ** package ‘teal.slice’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal.slice) begin installing package ‘teal’ * installing *source* package ‘tern’ ... ** this is package ‘tern’ version ‘0.9.9’ ** package ‘tern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern) begin installing package ‘tern.gee’ begin installing package ‘tern.mmrm’ * installing *source* package ‘teal’ ... ** this is package ‘teal’ version ‘1.0.0’ ** package ‘teal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (teal) * installing *source* package ‘tern.gee’ ... ** this is package ‘tern.gee’ version ‘0.1.5’ ** package ‘tern.gee’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern.gee) * installing *source* package ‘tern.mmrm’ ... ** this is package ‘tern.mmrm’ version ‘0.3.3’ ** package ‘tern.mmrm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern.mmrm) checking teal.reporter_0.6.0.tar.gz ... checking teal_1.0.0.tar.gz ... checking teal.modules.clinical_0.11.1.tar.gz ... checking teal.modules.general_0.5.1.tar.gz ... Depends: Package: teal.reporter Imports: bsicons, bslib (>= 0.8.0), checkmate (>= 2.1.0), commonmark (>= 1.9.2), flextable (>= 0.9.2), grid, gtsummary (>= 2.0.0), htmltools (>= 0.5.4), jsonlite (>= 1.8.9), knitr (>= 1.42), lifecycle (>= 0.2.0), methods, R6, rlang (>= 1.0.0), rlistings (>= 0.2.10), rmarkdown (>= 2.23), rtables (>= 0.6.11), rtables.officer (>= 0.0.2), shiny (>= 1.8.1), shinybusy (>= 0.3.2), shinyjs (>= 2.1.0), shinyWidgets (>= 0.5.1), sortable (>= 0.5.0), teal.code (>= 0.7.0), teal.data (>= 0.8.0), tools, utils, yaml (>= 1.1.0), zip (>= 1.1.0) Timings: user system elapsed teal.reporter 204.873 6.753 214.826 Results: Check status summary: ERROR NOTE OK Source packages 0 1 0 Reverse depends 1 0 2 Check results summary: teal.reporter ... NOTE * checking examples ... [15s/16s] NOTE rdepends_teal.modules.clinical ... OK rdepends_teal.modules.general ... OK rdepends_teal ... ERROR * checking Rd cross-references ... WARNING * checking examples ... [1s/1s] ERROR * checking tests ... [135s/167s] ERROR Check results changes: Package: teal Check: examples New result: ERROR Package: teal Check: Rd cross-references New result: WARNING Package: teal Check: tests New result: ERROR