* using log directory ‘/srv/hornik/tmp/CRAN_pretest/tcpl.Rcheck’
* using R Under development (unstable) (2024-10-07 r87211)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘tcpl/DESCRIPTION’ ... OK
* this is package ‘tcpl’ version ‘3.2.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [6s/27s] NOTE
Maintainer: ‘Jason Brown <brown.jason@epa.gov>’

Possibly misspelled words in DESCRIPTION:
  invitrodb (21:168)
  tcpl (21:50, 21:304)

Found the following (possibly) invalid file URIs:
  URI: aeds
    From: inst/doc/Introduction_Appendices.html
  URI: CONTRIBUTING.md
    From: README.md
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tcpl’ can be installed ... [8s/8s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking whether startup messages can be suppressed ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [15s/15s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [42s/43s] ERROR
  Running ‘testthat.R’ [42s/42s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(tcpl)
  tcpl (v3.2.0) loaded with the following settings:
    TCPL_DB:    NA
    TCPL_USER:  NA
    TCPL_HOST:  https://api-ccte.epa.gov/bioactivity
    TCPL_DRVR:  API
  Default settings stored in tcpl config file. See ?tcplConf for more information.
  > 
  > test_check("tcpl")
  [ FAIL 49 | WARN 0 | SKIP 5 | PASS 460 ]
  
  ══ Skipped tests (5) ═══════════════════════════════════════════════════════════
  • On CRAN (3): 'test-tcplDefine.R:3:3', 'test-tcplDefine.R:9:3',
    'test-tcplDefine.R:19:3'
  • Skipping (2): 'test-tcplPlot.R:16:3', 'test-tcplPlot.R:40:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-tcplPlot.R:222:3'): tcplPlot works for single m4id ───────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:223:3'): tcplPlot works for single m4id ───────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:240:3'): tcplPlot works for multiple m4id ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:241:3'): tcplPlot works for multiple m4id ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:260:3'): tcplPlot works for single aeid ───────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:261:3'): tcplPlot works for single aeid ───────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:280:3'): tcplPlot works for multiple aeid ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:281:3'): tcplPlot works for multiple aeid ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:282:3'): tcplPlot works for multiple aeid ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:283:3'): tcplPlot works for multiple aeid ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:288:3'): tcplPlot works for multiple aeid ─────────
  `fn` has length 2, not length 3.
  ── Failure ('test-tcplPlot.R:302:3'): tcplPlot works for single spid/aeid ──────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:303:3'): tcplPlot works for single spid/aeid ──────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:320:3'): tcplPlot works for multiple spid/aeid ────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:321:3'): tcplPlot works for multiple spid/aeid ────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:340:3'): tcplPlot works for single m4id compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:341:3'): tcplPlot works for single m4id compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:358:3'): tcplPlot works for multiple m4id compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:359:3'): tcplPlot works for multiple m4id compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:378:3'): tcplPlot works for single aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:379:3'): tcplPlot works for single aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:398:3'): tcplPlot works for multiple aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:399:3'): tcplPlot works for multiple aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:418:3'): tcplPlot works for single spid/aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:419:3'): tcplPlot works for single spid/aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:436:3'): tcplPlot works for multiple spid/aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:437:3'): tcplPlot works for multiple spid/aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:457:3'): tcplPlot works for single s2id ───────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:474:3'): tcplPlot works for multiple s2id ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:493:3'): tcplPlot works for single aeid ───────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:512:3'): tcplPlot works for multiple aeid ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:513:3'): tcplPlot works for multiple aeid ─────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:518:3'): tcplPlot works for multiple aeid ─────────
  `fn` has length 2, not length 3.
  ── Failure ('test-tcplPlot.R:532:3'): tcplPlot works for single spid/aeid ──────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:549:3'): tcplPlot works for multiple spid/aeid ────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:568:3'): tcplPlot works for single s2id compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:585:3'): tcplPlot works for multiple s2id compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:604:3'): tcplPlot works for single aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:623:3'): tcplPlot works for multiple aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:642:3'): tcplPlot works for single spid/aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:659:3'): tcplPlot works for multiple spid/aeid compared ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:680:3'): standalone plotting works in mc ──────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:697:3'): standalone advanced comparison plotting works in mc ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:714:3'): standalone plotting works in sc ──────────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:731:3'): standalone advanced comparison plotting works in sc ──
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:755:5'): tcplPlot works with API data by m4id ─────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:761:5'): tcplPlot works with API data by aeid ─────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:767:5'): tcplPlot works with API data by spid ─────
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  ── Failure ('test-tcplPlot.R:773:5'): tcplPlot works with API data by dtxsid ───
  Expected `suppressWarnings(...)` to run without any errors.
  i Actually got a <simpleError> with text:
    conversion failure on 'Concentration (μM)' in 'mbcsToSbcs': for μ (U+03BC)
  
  [ FAIL 49 | WARN 0 | SKIP 5 | PASS 460 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [12s/12s] OK
* checking PDF version of manual ... [4s/4s] OK
* checking HTML version of manual ... [2s/2s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE