* using log directory ‘/srv/hornik/tmp/CRAN/tableUne.Rcheck’ * using R Under development (unstable) (2024-05-01 r86507) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘tableUne/DESCRIPTION’ ... OK * this is package ‘tableUne’ version ‘1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/2s] NOTE Maintainer: ‘Victor Rechard ’ New submission Possibly misspelled words in DESCRIPTION: discribes (6:136) The Title field should be in title case. Current version is: ‘Create a table one for clinical trial paper’ In title case that is: ‘Create a Table One for Clinical Trial Paper’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘tableUne’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] NOTE table_une_ligne_quali: no visible global function definition for ‘var_label’ table_une_ligne_quali: no visible global function definition for ‘fisher.test’ table_une_ligne_quanti: no visible global function definition for ‘var_label’ table_une_ligne_quanti: no visible global function definition for ‘sd’ table_une_ligne_quanti: no visible global function definition for ‘t.test’ table_une_ligne_quanti: no visible global function definition for ‘median’ table_une_ligne_quanti: no visible global function definition for ‘quantile’ table_une_ligne_quanti: no visible global function definition for ‘wilcox.test’ Undefined global functions or variables: fisher.test median quantile sd t.test var_label wilcox.test Consider adding importFrom("stats", "fisher.test", "median", "quantile", "sd", "t.test", "wilcox.test") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'round_p_value.Rd' ‘x’ Undocumented arguments in Rd file 'tableUne.Rd' ‘strata’ Documented arguments not in \usage in Rd file 'tableUne.Rd': ‘Strata’ Undocumented arguments in Rd file 'table_une_ligne_quali.Rd' ‘var’ ‘strata’ ‘data’ Undocumented arguments in Rd file 'table_une_ligne_quanti.Rd' ‘var’ ‘strata’ ‘data’ ‘d’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... NOTE Argument items with no description in Rd file 'round_p_value.Rd': ‘d’ Argument items with no description in Rd file 'table_une_ligne_quali.Rd': ‘d’ Argument items with no description in Rd file 'table_une_ligne_quanti.Rd': ‘normal’ * checking for unstated dependencies in examples ... OK * checking examples ... [0s/0s] ERROR Running examples in ‘tableUne-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: tableUne > ### Title: Create a table 1. > ### Aliases: tableUne > > ### ** Examples > > d=c(3,3) > normals=c(T) Error: T used instead of TRUE Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 WARNING, 3 NOTEs