* using log directory ‘/srv/hornik/tmp/CRAN/syrup.Rcheck’ * using R Under development (unstable) (2024-07-07 r86880) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (1+b1) Debian flang-new version 18.1.8 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘syrup/DESCRIPTION’ ... OK * this is package ‘syrup’ version ‘0.1.0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/5s] NOTE Maintainer: ‘Simon Couch ’ New submission * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘syrup’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [2s/2s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [3s/4s] ERROR Running examples in ‘syrup-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: syrup > ### Title: Memory and CPU Usage Information for Parallel R Code > ### Aliases: syrup > > ### ** Examples > > ## Don't show: > if (ps::ps_os_type()[["POSIX"]]) (if (getRversion() >= "3.4") withAutoprint else force)({ # examplesIf + ## End(Don't show) + # pass any expression to syrup. first, sequentially: + res_syrup <- syrup({res_output <- Sys.sleep(1)}) + + res_syrup + + # to snapshot memory and CPU information more (or less) often, set `interval` + syrup(Sys.sleep(1), interval = .01) + + # use `peak = TRUE` to return only the snapshot with + # the highest memory usage (as `sum(rss)`) + syrup(Sys.sleep(1), interval = .01, peak = TRUE) + + # results from syrup are more---or maybe only---useful when + # computations are evaluated in parallel. see package README + # for an example. + ## Don't show: + }) # examplesIf > res_syrup <- syrup({ + res_output <- Sys.sleep(1) + }) > res_syrup # A tibble: 10 × 8 id time pid ppid name pct_cpu rss vms 1 1 2024-07-08 15:42:23 1266860 1266859 R NA 76.3MB 426.98MB 2 1 2024-07-08 15:42:23 1266399 1266396 R NA 225.6MB 1.35GB 3 1 2024-07-08 15:42:23 1266078 1266077 R NA 105.1MB 428.51MB 4 1 2024-07-08 15:42:23 1266067 1266066 R NA 25MB 285.95MB 5 1 2024-07-08 15:42:23 1266053 1266052 R NA 68.9MB 338.68MB 6 2 2024-07-08 15:42:24 1266860 1266859 R 0 76.3MB 426.98MB 7 2 2024-07-08 15:42:24 1266399 1266396 R 0 225.6MB 1.35GB 8 2 2024-07-08 15:42:24 1266078 1266077 R 0 105.1MB 428.51MB 9 2 2024-07-08 15:42:24 1266067 1266066 R 0 25MB 285.95MB 10 2 2024-07-08 15:42:24 1266053 1266052 R 0 68.9MB 338.68MB > syrup(Sys.sleep(1), interval = 0.01) Error in UseMethod("mutate") : no applicable method for 'mutate' applied to an object of class "NULL" Calls: ... eval -> eval -> syrup -> mutate_pct_cpu -> Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [5s/9s] ERROR Running ‘testthat.R’ [5s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(syrup) Loading required package: bench > > test_check("syrup") [ FAIL 2 | WARN 0 | SKIP 2 | PASS 17 ] ══ Skipped tests (2) ═══════════════════════════════════════════════════════════ • On CRAN (2): 'test-syrup.R:67:3', 'test-syrup.R:73:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-syrup.R:45:3'): syrup(interval) works ──────────────────────── Expected `res_01 <- syrup(Sys.sleep(1), interval = 0.01)` to run without any errors. i Actually got a with text: no applicable method for 'mutate' applied to an object of class "NULL" ── Error ('test-syrup.R:59:3'): syrup(interval) works ────────────────────────── Error in `eval(code, test_env)`: object 'res_01' not found Backtrace: ▆ 1. └─testthat::expect_s3_class(res_01, "tbl_df") at test-syrup.R:59:3 2. └─testthat::quasi_label(enquo(object), arg = "object") 3. └─rlang::eval_bare(expr, quo_get_env(quo)) [ FAIL 2 | WARN 0 | SKIP 2 | PASS 17 ] Error: Test failures Execution halted * checking PDF version of manual ... [2s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE