* using log directory ‘/srv/hornik/tmp/CRAN/synthesis.Rcheck’ * using R Under development (unstable) (2024-06-27 r86848) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (1) Debian flang-new version 18.1.8 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘synthesis/DESCRIPTION’ ... OK * this is package ‘synthesis’ version ‘1.2.5’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/6s] NOTE Maintainer: ‘Ze Jiang ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Jiang (12:181, 12:267, 12:377) Rashid (12:388) Sharma (12:192, 12:278, 12:418) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-06-27 as issues were not corrected in time. Resubmission still Suggests: NPRED Suggests or Enhances not in mainstream repositories: WASP * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: ‘WASP’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘synthesis’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [0s/0s] OK Running ‘testthat.R’ [0s/0s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [5s/5s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘synthesis.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN/synthesis.Rcheck/vign_test/synthesis/vignettes/synthesis_files/figure-html/mod1-1.png 864x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 53772 bytes Input file size = 53922 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45965 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 45965 Output IDAT size = 45965 bytes (7807 bytes decrease) Output file size = 46043 bytes (7879 bytes = 14.61% decrease) ** Processing: /srv/hornik/tmp/CRAN/synthesis.Rcheck/vign_test/synthesis/vignettes/synthesis_files/figure-html/mod1-2.png 864x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 103659 bytes Input file size = 103881 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95872 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 95872 Output IDAT size = 95872 bytes (7787 bytes decrease) Output file size = 95950 bytes (7931 bytes = 7.63% decrease) ** Processing: /srv/hornik/tmp/CRAN/synthesis.Rcheck/vign_test/synthesis/vignettes/synthesis_files/figure-html/mod1-3.png 864x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 131742 bytes Input file size = 132012 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 119583 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 119583 Output IDAT size = 119583 bytes (12159 bytes decrease) Output file size = 119661 bytes (12351 bytes = 9.36% decrease) ** Processing: /srv/hornik/tmp/CRAN/synthesis.Rcheck/vign_test/synthesis/vignettes/synthesis_files/figure-html/mod6-1.png 864x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 81443 bytes Input file size = 82409 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 79340 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 78576 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 64031 zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 63486 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 5 IDAT size = 63486 Output IDAT size = 63486 bytes (17957 bytes decrease) Output file size = 63564 bytes (18845 bytes = 22.87% decrease) ** Processing: /srv/hornik/tmp/CRAN/synthesis.Rcheck/vign_test/synthesis/vignettes/synthesis_files/figure-html/mod2-1.png 864x672 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21540 bytes Input file size = 22422 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20129 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20113 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 20113 Output IDAT size = 20113 bytes (1427 bytes decrease) Output file size = 20191 bytes (2231 bytes = 9.95% decrease) ** Processing: /srv/hornik/tmp/CRAN/synthesis.Rcheck/vign_test/synthesis/vignettes/synthesis_files/figure-html/mod2-2.png 864x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 136303 bytes Input file size = 136573 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 123404 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 123404 Output IDAT size = 123404 bytes (12899 bytes decrease) Output file size = 123482 bytes (13091 bytes = 9.59% decrease) ** Processing: /srv/hornik/tmp/CRAN/synthesis.Rcheck/vign_test/synthesis/vignettes/synthesis_files/figure-html/mod3-1.png 864x384 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 21837 bytes Input file size = 22719 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19672 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19627 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 19627 Output IDAT size = 19627 bytes (2210 bytes decrease) Output file size = 19705 bytes (3014 bytes = 13.27% decrease) Quitting from lines 225-251 [mod4] (synthesis.Rmd) Error: processing vignette 'synthesis.Rmd' failed with diagnostics: there is no package called 'WASP' --- failed re-building ‘synthesis.Rmd’ SUMMARY: processing the following file failed: ‘synthesis.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 2 NOTEs