* using log directory 'd:/RCompile/CRANincoming/R-devel/svrep.Rcheck'
* using R Under development (unstable) (2023-09-07 r85102 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'svrep/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'svrep' version '0.6.2'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [93s] NOTE
Maintainer: 'Ben Schneider <benjamin.julius.schneider@gmail.com>'

Found the following (possibly) invalid URLs:
  URL: https://www.census.gov/programs-surveys/acs/
    From: inst/doc/two-phase-sampling.html
    Status: Error
    Message: Operation timed out after 60010 milliseconds with 0 bytes received
  URL: https://www.nsf.gov/statistics/srvygrads
    From: inst/doc/two-phase-sampling.html
    Status: Error
    Message: Could not resolve host: ncses.nsf.gov
  URL: https://www150.statcan.gc.ca/n1/pub/12-001-x/12-001-x2014001-eng.pdf
    From: inst/doc/bootstrap-replicates.html
    Status: Error
    Message: Operation timed out after 60009 milliseconds with 0 bytes received
  URL: https://www150.statcan.gc.ca/n1/pub/12-001-x/2021002/article/00006-eng.htm
    From: DESCRIPTION
          man/svrep-package.Rd
    Status: Error
    Message: Operation timed out after 60009 milliseconds with 0 bytes received
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'svrep' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [17s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'svrep-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: make_fays_gen_rep_factors
> ### Title: Form replication factors using Fay's generalized replication
> ###   method
> ### Aliases: make_fays_gen_rep_factors
> 
> ### ** Examples
> 
>   library(survey)
Loading required package: grid
Loading required package: Matrix
Loading required package: survival

Attaching package: 'survey'

The following object is masked from 'package:graphics':

    dotchart

> 
> # Load an example dataset that uses unequal probability sampling ----
>   data('election', package = 'survey')
> 
> # Create matrix to represent the Horvitz-Thompson estimator as a quadratic form ----
>   n <- nrow(election_pps)
>   pi <- election_jointprob
>   horvitz_thompson_matrix <- matrix(nrow = n, ncol = n)
>   for (i in seq_len(n)) {
+     for (j in seq_len(n)) {
+       horvitz_thompson_matrix[i,j] <- 1 - (pi[i,i] * pi[j,j])/pi[i,j]
+     }
+   }
> 
>   ## Equivalently:
> 
>   horvitz_thompson_matrix <- make_quad_form_matrix(
+     variance_estimator = "Horvitz-Thompson",
+     joint_probs = election_jointprob
+   )
> 
> # Make generalized replication adjustment factors ----
> 
>   adjustment_factors <- make_fays_gen_rep_factors(
+     Sigma = horvitz_thompson_matrix,
+     max_replicates = 50
+   )
>   attr(adjustment_factors, 'scale')
[1] 1
> 
> # Compute the Horvitz-Thompson estimate and the replication estimate
> 
> ht_estimate <- svydesign(data = election_pps, ids = ~ 1,
+                          prob = diag(election_jointprob),
+                          pps = ppsmat(election_jointprob)) |>
+   svytotal(x = ~ Kerry)
Error in h(simpleError(msg, call)) : 
  error in evaluating the argument 'x' in selecting a method for function 'as.matrix': 'crossprod' is not an exported object from 'namespace:Matrix'
Calls: svytotal ... apply -> FUN -> as.matrix -> .handleSimpleError -> h
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [32s] ERROR
  Running 'testthat.R' [32s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(svrep)
  > 
  > test_check("svrep")
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 181 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-generalized-bootstrap.R:338:7'): `exact_vcov = TRUE` gives exact variance estimate for totals ──
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': 'crossprod' is not an exported object from 'namespace:Matrix'
  Backtrace:
       ▆
    1. ├─stats::vcov(svytotal(pps_design_yg, x = ~Bush + Kerry)) at test-generalized-bootstrap.R:338:6
    2. ├─survey::svytotal(pps_design_yg, x = ~Bush + Kerry)
    3. ├─survey:::svytotal.pps(pps_design_yg, x = ~Bush + Kerry)
    4. │ └─survey:::ppsvar(x/design$prob, design)
    5. │   └─survey:::ygvar.matrix(...)
    6. │     └─survey:::htvar.matrix(xcheck, Dcheck)
    7. │       └─base::apply(...)
    8. │         └─survey (local) FUN(newX[, i], ...)
    9. │           └─base::apply(...)
   10. │             └─survey (local) FUN(newX[, i], ...)
   11. │               └─base::as.matrix(Matrix::crossprod(xicheck, Dcheck %*% xjcheck))
   12. └─base::.handleSimpleError(...)
   13.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-generalized-bootstrap.R:380:7'): Bootstrap estimate with many replicates close to expected value ──
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': 'crossprod' is not an exported object from 'namespace:Matrix'
  Backtrace:
       ▆
    1. ├─stats::vcov(svytotal(x = ~Bush, design = pps_design_yg)) at test-generalized-bootstrap.R:380:6
    2. ├─survey::svytotal(x = ~Bush, design = pps_design_yg)
    3. ├─survey:::svytotal.pps(x = ~Bush, design = pps_design_yg)
    4. │ └─survey:::ppsvar(x/design$prob, design)
    5. │   └─survey:::ygvar.matrix(...)
    6. │     └─survey:::htvar.matrix(xcheck, Dcheck)
    7. │       └─base::apply(...)
    8. │         └─survey (local) FUN(newX[, i], ...)
    9. │           └─base::apply(...)
   10. │             └─survey (local) FUN(newX[, i], ...)
   11. │               └─base::as.matrix(Matrix::crossprod(xicheck, Dcheck %*% xjcheck))
   12. └─base::.handleSimpleError(...)
   13.   └─base (local) h(simpleError(msg, call))
  ── Error ('test-quadratic-forms.R:169:3'): (code run outside of `test_that()`) ──
  Error in `h(simpleError(msg, call))`: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': 'crossprod' is not an exported object from 'namespace:Matrix'
  Backtrace:
       ▆
    1. ├─stats::vcov(...) at test-quadratic-forms.R:169:2
    2. ├─survey::svytotal(...)
    3. ├─survey:::svytotal.pps(...)
    4. │ └─survey:::ppsvar(x/design$prob, design)
    5. │   └─survey:::htvar.matrix(...)
    6. │     └─base::apply(...)
    7. │       └─survey (local) FUN(newX[, i], ...)
    8. │         └─base::apply(...)
    9. │           └─survey (local) FUN(newX[, i], ...)
   10. │             └─base::as.matrix(Matrix::crossprod(xicheck, Dcheck %*% xjcheck))
   11. └─base::.handleSimpleError(...)
   12.   └─base (local) h(simpleError(msg, call))
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 181 ]
  Error: Test failures
  In addition: Warning message:
  call dbDisconnect() when finished working with a connection 
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [48s] ERROR
Error(s) in re-building vignettes:
--- re-building 'bootstrap-replicates.Rmd' using rmarkdown

Quitting from lines 123-135 [unnamed-chunk-3] (bootstrap-replicates.Rmd)
Error: processing vignette 'bootstrap-replicates.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'as.matrix': 'crossprod' is not an exported object from 'namespace:Matrix'
--- failed re-building 'bootstrap-replicates.Rmd'

--- re-building 'nonresponse-adjustments.Rmd' using rmarkdown
--- finished re-building 'nonresponse-adjustments.Rmd'

--- re-building 'sample-based-calibration.Rmd' using rmarkdown
--- finished re-building 'sample-based-calibration.Rmd'

--- re-building 'two-phase-sampling.Rmd' using rmarkdown
--- finished re-building 'two-phase-sampling.Rmd'

SUMMARY: processing the following file failed:
  'bootstrap-replicates.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [30s] OK
* checking HTML version of manual ... OK
* DONE
Status: 3 ERRORs, 1 NOTE