downloading reverse dependencies ... downloading actel_1.3.0.tar.gz ... ok downloading archeoViz_1.4.1.tar.gz ... ok downloading BioVenn_1.1.3.tar.gz ... ok downloading camcorder_0.1.0.tar.gz ... ok downloading Coxmos_1.1.5.tar.gz ... ok downloading cubeview_0.4.1.tar.gz ... ok downloading ggsem_0.2.4.tar.gz ... ok downloading glossa_1.2.4.tar.gz ... ok downloading guiplot_0.5.0.tar.gz ... ok downloading InflectSSP_1.6.tar.gz ... ok downloading kableExtra_1.4.0.tar.gz ... ok downloading leafpop_0.1.0.tar.gz ... ok downloading LLSR_0.0.3.1.tar.gz ... ok downloading modelDown_1.1.tar.gz ... ok downloading netSEM_0.6.2.tar.gz ... ok downloading plumber2_0.1.0.tar.gz ... ok downloading PvSTATEM_0.2.2.tar.gz ... ok downloading SerolyzeR_1.3.1.tar.gz ... ok downloading SGP_2.2-0.0.tar.gz ... ok downloading shinyloadtest_1.2.0.tar.gz ... ok downloading visvow_1.3.11.tar.gz ... ok downloading WebGestaltR_0.4.6.tar.gz ... ok downloading afcharts_0.4.1.tar.gz ... ok downloading aion_1.6.0.tar.gz ... ok downloading ananke_0.1.0.tar.gz ... ok downloading animint2_2025.9.16.tar.gz ... ok downloading ArchaeoPhases_2.1.0.tar.gz ... ok downloading autoslider.core_0.3.1.tar.gz ... ok downloading brokenstick_2.6.0.tar.gz ... ok downloading COMMA_1.1.1.tar.gz ... ok downloading deeptime_2.2.0.tar.gz ... ok downloading dimensio_0.14.1.tar.gz ... ok downloading DRomics_2.6-2.tar.gz ... ok downloading flextable_0.9.10.tar.gz ... ok downloading gganimate_1.0.11.tar.gz ... ok downloading ggdist_3.3.3.tar.gz ... ok downloading ggExtra_0.11.0.tar.gz ... ok downloading ggfields_0.0.7.tar.gz ... ok downloading ggfixest_0.4.0.tar.gz ... ok downloading gglyph_0.2.0.tar.gz ... ok downloading ggpattern_1.2.1.tar.gz ... ok downloading ggplot2_4.0.0.tar.gz ... ok downloading ggrepel_0.9.6.tar.gz ... ok downloading ggsankeyfier_0.1.8.tar.gz ... ok downloading ggspark_0.0.2.tar.gz ... ok downloading gratia_0.11.1.tar.gz ... ok downloading gridpattern_1.3.1.tar.gz ... ok downloading gtExtras_0.6.1.tar.gz ... ok downloading isopleuros_1.4.0.tar.gz ... ok downloading kairos_2.3.0.tar.gz ... ok downloading kfre_0.0.2.tar.gz ... ok downloading khroma_1.17.0.tar.gz ... ok downloading knitr_1.50.tar.gz ... ok downloading legendry_0.2.4.tar.gz ... ok downloading mapsf_1.0.0.tar.gz ... ok downloading marginaleffects_0.30.0.tar.gz ... ok downloading mlr_2.19.3.tar.gz ... ok downloading nexus_0.6.0.tar.gz ... ok downloading nmaplateplot_1.0.2.tar.gz ... ok downloading opencpu_2.2.14.tar.gz ... ok downloading OrgHeatmap_0.1.2.tar.gz ... ok downloading partialling.out_0.2.0.tar.gz ... ok downloading parttree_0.1.1.tar.gz ... ok downloading pkgdepends_0.9.0.tar.gz ... ok downloading pkgndep_1.99.3.tar.gz ... ok downloading plotor_0.7.0.tar.gz ... ok downloading plumber_1.3.0.tar.gz ... ok downloading plutor_0.1.0.tar.gz ... ok downloading projections_0.6.1.tar.gz ... ok downloading rcmdcheck_1.4.0.tar.gz ... ok downloading rsvg_2.7.0.tar.gz ... ok downloading SCpubr_3.0.0.tar.gz ... ok downloading serocalculator_1.3.0.tar.gz ... ok downloading slackr_3.3.1.tar.gz ... ok downloading svgPanZoom_0.3.4.tar.gz ... ok downloading systemfonts_1.3.1.tar.gz ... ok downloading tabula_3.3.2.tar.gz ... ok downloading tern_0.9.9.tar.gz ... ok downloading text_1.7.0.tar.gz ... ok downloading thematic_0.1.8.tar.gz ... ok downloading tidybayes_3.0.7.tar.gz ... ok downloading tinyplot_0.5.0.tar.gz ... ok downloading tinysnapshot_0.2.0.tar.gz ... ok downloading viridis_0.6.5.tar.gz ... ok installing dependencies ‘adabag’, ‘AGD’, ‘aion’, ‘altdoc’, ‘ambient’, ‘and’, ‘ArchaeoData’, ‘archivist’, ‘arkhe’, ‘aRtsy’, ‘asciicast’, ‘auditor’, ‘automap’, ‘baizer’, ‘base64’, ‘bife’, ‘bindrcpp’, ‘BiocVersion’, ‘blme’, ‘blockCV’, ‘breakDown’, ‘brmsmargins’, ‘brnn’, ‘bst’, ‘care’, ‘carrier’, ‘causaldata’, ‘cjoint’, ‘clarify’, ‘cmaes’, ‘CopernicusMarine’, ‘crch’, ‘crs’, ‘DALEXtra’, ‘DCchoice’, ‘decoupleR’, ‘deepnet’, ‘deeptimedata’, ‘detectseparation’, ‘diffviewer’, ‘dimensio’, ‘dispRity’, ‘distcrete’, ‘divDyn’, ‘doconv’, ‘drifter’, ‘EpiEstim’, ‘equatags’, ‘equate’, ‘equivalence’, ‘evtree’, ‘excelR’, ‘extrafont’, ‘FDboost’, ‘fiery’, ‘filters’, ‘firesafety’, ‘firesale’, ‘firestorm’, ‘flexsdm’, ‘fmeffects’, ‘folio’, ‘frbs’, ‘FSelector’, ‘FSelectorRcpp’, ‘fwb’, ‘fwlplot’, ‘gamair’, ‘GeoThinneR’, ‘ggokabeito’, ‘ggpattern’, ‘ggplot2movies’, ‘ggpolypath’, ‘gistr’, ‘GJRM’, ‘glmtoolbox’, ‘glmx’, ‘gridBezier’, ‘gridpattern’, ‘gsloid’, ‘incidence’, ‘infercnv’, ‘irace’, ‘isopleuros’, ‘itsadug’, ‘JuliaCall’, ‘laGP’, ‘legendry’, ‘margins’, ‘matrixsampling’, ‘mcp’, ‘mhurdle’, ‘missRanger’, ‘mldr’, ‘mlr3verse’, ‘mRMRe’, ‘munsell’, ‘mvgam’, ‘Nebulosa’, ‘nestcolor’, ‘nplr’, ‘nsROC’, ‘officedown’, ‘ordbetareg’, ‘osfr’, ‘palaeoverse’, ‘paleotree’, ‘pamr’, ‘pkgcache’, ‘praznik’, ‘qrcode’, ‘randomNames’, ‘rapidoc’, ‘Rchoice’, ‘RColorConesa’, ‘Rdatasets’, ‘redoc’, ‘relations’, ‘REndo’, ‘reqres’, ‘rFerns’, ‘risksetROC’, ‘rlistings’, ‘rmacrostrat’, ‘robustlmm’, ‘Rook’, ‘rotationForest’, ‘routr’, ‘RRF’, ‘RSNNS’, ‘rucrdtw’, ‘sda’, ‘SEAHORS’, ‘SGPdata’, ‘smoothROCtime’, ‘smplot2’, ‘sparkline’, ‘sparseLDA’, ‘ssdtools’, ‘stepPlr’, ‘survAUC’, ‘survcomp’, ‘svglite’, ‘tabula’, ‘tern’, ‘texPreview’, ‘tinyplot’, ‘titanic’, ‘toOrdinal’, ‘topics’, ‘tsModel’, ‘turboEM’, ‘UCell’, ‘unix’, ‘useful’, ‘vwline’, ‘waffle’, ‘webp’ Warning: packages ‘flexsdm’, ‘ArchaeoData’, ‘bife’, ‘waffle’ are not available for this version of R Versions of these packages for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘strap’, ‘geoscale’, ‘perm’, ‘Icens’, ‘stabm’, ‘findpython’, ‘Rttf2pt1’, ‘hnp’, ‘brotli’, ‘keep’, ‘h3jsr’, ‘castor’, ‘Claddis’, ‘GET’, ‘phyclust’, ‘locatexec’, ‘xslt’, ‘katex’, ‘extraoperators’, ‘interval’, ‘PairedData’, ‘ggparty’, ‘plotfunctions’, ‘prediction’, ‘mlr3cluster’, ‘mlr3data’, ‘mlr3filters’, ‘mlr3fselect’, ‘mlr3hyperband’, ‘mlr3inferr’, ‘mlr3mbo’, ‘mlr3tuningspaces’, ‘mlr3viz’, ‘ConsRank’, ‘gamboostLSS’, ‘ROI.plugin.lpsolve’, ‘aweek’, ‘coarseDataTools’, ‘HiddenMarkov’, ‘argparse’, ‘BiocNeighbors’, ‘ssddata’, ‘universals’, ‘svgPanZoom’, ‘textmineR’, ‘ngram’, ‘bindr’ begin installing package ‘geoscale’ begin installing package ‘Icens’ begin installing package ‘perm’ begin installing package ‘stabm’ begin installing package ‘findpython’ begin installing package ‘Rttf2pt1’ begin installing package ‘hnp’ begin installing package ‘brotli’ begin installing package ‘castor’ begin installing package ‘keep’ begin installing package ‘h3jsr’ begin installing package ‘GET’ begin installing package ‘locatexec’ begin installing package ‘phyclust’ begin installing package ‘xslt’ begin installing package ‘katex’ begin installing package ‘extraoperators’ begin installing package ‘PairedData’ begin installing package ‘ggparty’ begin installing package ‘plotfunctions’ begin installing package ‘prediction’ begin installing package ‘mlr3cluster’ begin installing package ‘mlr3data’ begin installing package ‘mlr3filters’ begin installing package ‘mlr3hyperband’ begin installing package ‘mlr3inferr’ begin installing package ‘mlr3mbo’ begin installing package ‘mlr3tuningspaces’ * installing *source* package ‘keep’ ... ** this is package ‘keep’ version ‘1.0’ ** package ‘keep’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (keep) begin installing package ‘mlr3viz’ * installing *source* package ‘findpython’ ... ** this is package ‘findpython’ version ‘1.0.9’ ** package ‘findpython’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (findpython) begin installing package ‘ConsRank’ * installing *source* package ‘locatexec’ ... ** this is package ‘locatexec’ version ‘0.1.1’ ** package ‘locatexec’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (locatexec) begin installing package ‘gamboostLSS’ * installing *source* package ‘extraoperators’ ... ** this is package ‘extraoperators’ version ‘0.3.0’ ** package ‘extraoperators’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (extraoperators) begin installing package ‘ROI.plugin.lpsolve’ * installing *source* package ‘katex’ ... ** this is package ‘katex’ version ‘1.5.0’ ** package ‘katex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (katex) begin installing package ‘aweek’ * installing *source* package ‘perm’ ... ** this is package ‘perm’ version ‘1.0-0.4’ ** package ‘perm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (perm) begin installing package ‘coarseDataTools’ * installing *source* package ‘geoscale’ ... ** this is package ‘geoscale’ version ‘2.0.1’ ** package ‘geoscale’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geoscale) begin installing package ‘HiddenMarkov’ * installing *source* package ‘hnp’ ... ** this is package ‘hnp’ version ‘1.2-7’ ** package ‘hnp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hnp) begin installing package ‘BiocNeighbors’ * installing *source* package ‘aweek’ ... ** this is package ‘aweek’ version ‘1.0.3’ ** package ‘aweek’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aweek) begin installing package ‘ssddata’ * installing *source* package ‘ROI.plugin.lpsolve’ ... ** this is package ‘ROI.plugin.lpsolve’ version ‘1.0-2’ ** package ‘ROI.plugin.lpsolve’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ROI.plugin.lpsolve) begin installing package ‘universals’ * installing *source* package ‘plotfunctions’ ... ** this is package ‘plotfunctions’ version ‘1.4’ ** package ‘plotfunctions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plotfunctions) begin installing package ‘svgPanZoom’ * installing *source* package ‘prediction’ ... ** this is package ‘prediction’ version ‘0.3.18’ ** package ‘prediction’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (prediction) begin installing package ‘textmineR’ * installing *source* package ‘mlr3inferr’ ... ** this is package ‘mlr3inferr’ version ‘0.2.0’ ** package ‘mlr3inferr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3inferr) begin installing package ‘ngram’ * installing *source* package ‘mlr3hyperband’ ... ** this is package ‘mlr3hyperband’ version ‘1.0.0’ ** package ‘mlr3hyperband’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3hyperband) begin installing package ‘bindr’ * installing *source* package ‘Icens’ ... ** this is package ‘Icens’ version ‘1.81.0’ ** package ‘Icens’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Icens) begin installing package ‘SEAHORS’ * installing *source* package ‘mlr3mbo’ ... ** this is package ‘mlr3mbo’ version ‘0.3.3’ ** package ‘mlr3mbo’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWpeM0N/R.INSTALL28ea1ed10d58c/mlr3mbo/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c avl.c -o avl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hv.c -o hv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c infill.c -o infill.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mlr3mbo.so avl.o hv.o infill.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWpeM0N/R.INSTALL28ea1ed10d58c/mlr3mbo/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mlr3mbo/00new/mlr3mbo/libs ** R ** preparing package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3mbo) begin installing package ‘survcomp’ * installing *source* package ‘svgPanZoom’ ... ** this is package ‘svgPanZoom’ version ‘0.3.4’ ** package ‘svgPanZoom’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (svgPanZoom) begin installing package ‘nsROC’ * installing *source* package ‘universals’ ... ** this is package ‘universals’ version ‘0.0.5’ ** package ‘universals’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (universals) begin installing package ‘RColorConesa’ * installing *source* package ‘stabm’ ... ** this is package ‘stabm’ version ‘1.2.2’ ** package ‘stabm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stabm) begin installing package ‘risksetROC’ * installing *source* package ‘PairedData’ ... ** this is package ‘PairedData’ version ‘1.1.1’ ** package ‘PairedData’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading Creating a new generic function for ‘summary’ in package ‘PairedData’ ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PairedData) begin installing package ‘smoothROCtime’ * installing *source* package ‘h3jsr’ ... ** this is package ‘h3jsr’ version ‘1.3.1’ ** package ‘h3jsr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (h3jsr) begin installing package ‘smplot2’ * installing *source* package ‘bindr’ ... ** this is package ‘bindr’ version ‘0.1.2’ ** package ‘bindr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bindr) begin installing package ‘automap’ * installing *source* package ‘HiddenMarkov’ ... ** this is package ‘HiddenMarkov’ version ‘1.8-14’ ** package ‘HiddenMarkov’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUOgEKB/R.INSTALL28ef295574efa4/HiddenMarkov/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c HiddenMarkov_init.c -o HiddenMarkov_init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c dthmm.f -o dthmm.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c extract.f -o extract.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c mmpp.f -o mmpp.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c multiply.f -o multiply.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o HiddenMarkov.so HiddenMarkov_init.o dthmm.o extract.o mmpp.o multiply.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUOgEKB/R.INSTALL28ef295574efa4/HiddenMarkov/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-HiddenMarkov/00new/HiddenMarkov/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiddenMarkov) begin installing package ‘GeoThinneR’ * installing *source* package ‘mlr3viz’ ... ** this is package ‘mlr3viz’ version ‘0.10.1’ ** package ‘mlr3viz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3viz) begin installing package ‘mcp’ * installing *source* package ‘ssddata’ ... ** this is package ‘ssddata’ version ‘1.0.0’ ** package ‘ssddata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssddata) begin installing package ‘sparkline’ * installing *source* package ‘ConsRank’ ... ** this is package ‘ConsRank’ version ‘2.1.5’ ** package ‘ConsRank’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ConsRank) begin installing package ‘excelR’ * installing *source* package ‘sparkline’ ... ** this is package ‘sparkline’ version ‘2.0’ ** package ‘sparkline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparkline) begin installing package ‘archivist’ * installing *source* package ‘ngram’ ... ** this is package ‘ngram’ version ‘3.2.3’ ** package ‘ngram’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp9QrejR/R.INSTALL28f19e2639acf3/ngram/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c asweka.c -o asweka.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c babble.c -o babble.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c constructor.c -o constructor.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c converters.c -o converters.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c count.c -o count.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getseed.c -o getseed.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram_native.c -o ngram_native.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phrase_table.c -o phrase_table.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c print.c -o print.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/counts.c -o ngram/src/counts.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/gen.c -o ngram/src/gen.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/hash.c -o ngram/src/hash.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/lex.c -o ngram/src/lex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/process.c -o ngram/src/process.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/wordcmp.c -o ngram/src/wordcmp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/mt/rand_mt.c -o ngram/src/rand/mt/rand_mt.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/mrg/rand_mrg.c -o ngram/src/rand/mrg/rand_mrg.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/rng_interface.c -o ngram/src/rand/rng_interface.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DNEXTWORDS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ngram/src/rand/samplers.c -o ngram/src/rand/samplers.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ngram.so asweka.o babble.o constructor.o converters.o count.o getseed.o ngram_native.o phrase_table.o print.o ngram/src/counts.o ngram/src/gen.o ngram/src/hash.o ngram/src/lex.o ngram/src/process.o ngram/src/wordcmp.o ngram/src/rand/mt/rand_mt.o ngram/src/rand/mrg/rand_mrg.o ngram/src/rand/rng_interface.o ngram/src/rand/samplers.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp9QrejR/R.INSTALL28f19e2639acf3/ngram/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ngram/00new/ngram/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ngram) begin installing package ‘breakDown’ * installing *source* package ‘ggparty’ ... ** this is package ‘ggparty’ version ‘1.0.0.1’ ** package ‘ggparty’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggparty) begin installing package ‘drifter’ * installing *source* package ‘Rttf2pt1’ ... ** this is package ‘Rttf2pt1’ version ‘1.3.14’ ** package ‘Rttf2pt1’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Ok5Uw/R.INSTALL28e9bd7e9957f3/Rttf2pt1/src' echo "make ttf2pt1 in ttf2pt1/ ..." make ttf2pt1 in ttf2pt1/ ... (cd ttf2pt1; make CC="`"/home/hornik/tmp/R/bin/R" CMD config CC`" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " ttf2pt1) make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp2Ok5Uw/R.INSTALL28e9bd7e9957f3/Rttf2pt1/src/ttf2pt1' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ttf2pt1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pt1.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c runt1asm.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ttf.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ft.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdf.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bitmap.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -o ttf2pt1 ttf2pt1.o pt1.o runt1asm.o ttf.o ft.o bdf.o bitmap.o -lm make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Ok5Uw/R.INSTALL28e9bd7e9957f3/Rttf2pt1/src/ttf2pt1' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2Ok5Uw/R.INSTALL28e9bd7e9957f3/Rttf2pt1/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rttf2pt1/00new/Rttf2pt1 [1] "" Installing ttf2pt1/ttf2pt1 to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rttf2pt1/00new/Rttf2pt1/exec ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rttf2pt1) begin installing package ‘useful’ * installing *source* package ‘gamboostLSS’ ... ** this is package ‘gamboostLSS’ version ‘2.1-0’ ** package ‘gamboostLSS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamboostLSS) begin installing package ‘firestorm’ * installing *source* package ‘mlr3filters’ ... ** this is package ‘mlr3filters’ version ‘0.9.0’ ** package ‘mlr3filters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3filters) begin installing package ‘rapidoc’ * installing *source* package ‘GeoThinneR’ ... ** this is package ‘GeoThinneR’ version ‘2.0.0’ ** package ‘GeoThinneR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeoThinneR) begin installing package ‘redoc’ * installing *source* package ‘RColorConesa’ ... ** this is package ‘RColorConesa’ version ‘1.0.0’ ** package ‘RColorConesa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RColorConesa) begin installing package ‘nplr’ * installing *source* package ‘coarseDataTools’ ... ** this is package ‘coarseDataTools’ version ‘0.7.2’ ** package ‘coarseDataTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (coarseDataTools) begin installing package ‘equate’ * installing *source* package ‘GET’ ... ** this is package ‘GET’ version ‘1.0-7’ ** package ‘GET’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GET) begin installing package ‘toOrdinal’ * installing *source* package ‘rapidoc’ ... ** this is package ‘rapidoc’ version ‘9.3.4’ ** package ‘rapidoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rapidoc) begin installing package ‘SGPdata’ * installing *source* package ‘redoc’ ... ** this is package ‘redoc’ version ‘2.0.0.75’ ** package ‘redoc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (redoc) begin installing package ‘diffviewer’ * installing *source* package ‘mlr3tuningspaces’ ... ** this is package ‘mlr3tuningspaces’ version ‘0.6.0’ ** package ‘mlr3tuningspaces’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3tuningspaces) begin installing package ‘arkhe’ * installing *source* package ‘risksetROC’ ... ** this is package ‘risksetROC’ version ‘1.0.4.1’ ** package ‘risksetROC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (risksetROC) begin installing package ‘folio’ * installing *source* package ‘excelR’ ... ** this is package ‘excelR’ version ‘0.4.0’ ** package ‘excelR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (excelR) begin installing package ‘relations’ * installing *source* package ‘xslt’ ... ** this is package ‘xslt’ version ‘1.5.1’ ** package ‘xslt’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS=-I/usr/include/libxml2 Using PKG_LIBS=-lexslt -lxslt -lxml2 ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHjcB3k/R.INSTALL28e9f71dfd9f4a/xslt/src' rm -f RcppExports.o xslt.o xslt_init.o xslt.so g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xslt.cpp -o xslt.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include/libxml2 -DSTRICT_R_HEADERS -DSTRICT_R_HEADERS -DR_NO_REMAP -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/xml2/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xslt_init.cpp -o xslt_init.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o xslt.so RcppExports.o xslt.o xslt_init.o -lexslt -lxslt -lxml2 -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHjcB3k/R.INSTALL28e9f71dfd9f4a/xslt/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-xslt/00new/xslt/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xslt) begin installing package ‘gistr’ * installing *source* package ‘mlr3data’ ... ** this is package ‘mlr3data’ version ‘0.9.0’ ** package ‘mlr3data’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3data) begin installing package ‘ggplot2movies’ * installing *source* package ‘smoothROCtime’ ... ** this is package ‘smoothROCtime’ version ‘0.1.1’ ** package ‘smoothROCtime’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smoothROCtime) begin installing package ‘rlistings’ * installing *source* package ‘diffviewer’ ... ** this is package ‘diffviewer’ version ‘0.1.2’ ** package ‘diffviewer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffviewer) begin installing package ‘filters’ * installing *source* package ‘toOrdinal’ ... ** this is package ‘toOrdinal’ version ‘1.3-0.0’ ** package ‘toOrdinal’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (toOrdinal) begin installing package ‘nestcolor’ * installing *source* package ‘firestorm’ ... ** this is package ‘firestorm’ version ‘0.1.0’ ** package ‘firestorm’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firestorm) begin installing package ‘AGD’ * installing *source* package ‘nplr’ ... ** this is package ‘nplr’ version ‘0.1-8’ ** package ‘nplr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nplr) begin installing package ‘turboEM’ * installing *source* package ‘folio’ ... ** this is package ‘folio’ version ‘1.5.1’ ** package ‘folio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (folio) begin installing package ‘deeptimedata’ * installing *source* package ‘ggplot2movies’ ... ** this is package ‘ggplot2movies’ version ‘0.0.1’ ** package ‘ggplot2movies’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggplot2movies) begin installing package ‘divDyn’ * installing *source* package ‘filters’ ... ** this is package ‘filters’ version ‘0.3.1’ ** package ‘filters’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (filters) begin installing package ‘gsloid’ * installing *source* package ‘nsROC’ ... ** this is package ‘nsROC’ version ‘1.1’ ** package ‘nsROC’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nsROC) begin installing package ‘paleotree’ * installing *source* package ‘equate’ ... ** this is package ‘equate’ version ‘2.0.8’ ** package ‘equate’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (equate) begin installing package ‘rmacrostrat’ * installing *source* package ‘breakDown’ ... ** this is package ‘breakDown’ version ‘0.2.2’ ** package ‘breakDown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (breakDown) begin installing package ‘officedown’ * installing *source* package ‘arkhe’ ... ** this is package ‘arkhe’ version ‘1.11.0’ ** package ‘arkhe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arkhe) begin installing package ‘CopernicusMarine’ * installing *source* package ‘nestcolor’ ... ** this is package ‘nestcolor’ version ‘0.1.3’ ** package ‘nestcolor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (nestcolor) begin installing package ‘legendry’ * installing *source* package ‘automap’ ... ** this is package ‘automap’ version ‘1.1-20’ ** package ‘automap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (automap) begin installing package ‘gridpattern’ * installing *source* package ‘drifter’ ... ** this is package ‘drifter’ version ‘0.2.1’ ** package ‘drifter’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (drifter) begin installing package ‘ambient’ * installing *source* package ‘gsloid’ ... ** this is package ‘gsloid’ version ‘0.2.0’ ** package ‘gsloid’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gsloid) begin installing package ‘munsell’ * installing *source* package ‘useful’ ... ** this is package ‘useful’ version ‘1.2.6.1’ ** package ‘useful’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (useful) begin installing package ‘gridBezier’ * installing *source* package ‘gistr’ ... ** this is package ‘gistr’ version ‘0.9.0’ ** package ‘gistr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gistr) begin installing package ‘ggokabeito’ * installing *source* package ‘deeptimedata’ ... ** this is package ‘deeptimedata’ version ‘1.0.0’ ** package ‘deeptimedata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deeptimedata) begin installing package ‘GJRM’ * installing *source* package ‘archivist’ ... ** this is package ‘archivist’ version ‘2.3.8’ ** package ‘archivist’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (archivist) begin installing package ‘gamair’ * installing *source* package ‘mcp’ ... ** this is package ‘mcp’ version ‘0.3.4’ ** package ‘mcp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mcp) begin installing package ‘carrier’ * installing *source* package ‘smplot2’ ... ** this is package ‘smplot2’ version ‘0.2.5’ ** package ‘smplot2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smplot2) begin installing package ‘JuliaCall’ * installing *source* package ‘rlistings’ ... ** this is package ‘rlistings’ version ‘0.2.12’ ** package ‘rlistings’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rlistings) begin installing package ‘altdoc’ * installing *source* package ‘munsell’ ... ** this is package ‘munsell’ version ‘0.5.1’ ** package ‘munsell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (munsell) begin installing package ‘blme’ * installing *source* package ‘gridBezier’ ... ** this is package ‘gridBezier’ version ‘1.1-1’ ** package ‘gridBezier’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gridBezier) begin installing package ‘causaldata’ * installing *source* package ‘ggokabeito’ ... ** this is package ‘ggokabeito’ version ‘0.1.0’ ** package ‘ggokabeito’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggokabeito) begin installing package ‘clarify’ * installing *source* package ‘CopernicusMarine’ ... ** this is package ‘CopernicusMarine’ version ‘0.3.2’ ** package ‘CopernicusMarine’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CopernicusMarine) begin installing package ‘cjoint’ * installing *source* package ‘gamair’ ... ** this is package ‘gamair’ version ‘1.0-2’ ** package ‘gamair’ successfully unpacked and MD5 sums checked ** using staged installation ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamair) begin installing package ‘crch’ * installing *source* package ‘officedown’ ... ** this is package ‘officedown’ version ‘0.4.1’ ** package ‘officedown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (officedown) begin installing package ‘DALEXtra’ * installing *source* package ‘survcomp’ ... ** this is package ‘survcomp’ version ‘1.59.0’ ** package ‘survcomp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4zDs12/R.INSTALL28f215730b6955/survcomp/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concordance.index.c -o concordance.index.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o foo_mrmr_ensemble_surv.cpp: In function ‘double get_correlation_ensemble(double*, int*, int, int, int)’: foo_mrmr_ensemble_surv.cpp:12:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 12 | for( unsigned int i=0; i< size; ++i ) { | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:22:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 22 | for( unsigned int i=0; i< size; ++i ) { | ~^~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:40:16: warning: ISO C++ forbids variable length array ‘res_ch’ [-Wvla] 40 | double res_ch[lenStrat]; | ^~~~~~ foo_mrmr_ensemble_surv.cpp:41:16: warning: ISO C++ forbids variable length array ‘res_dh’ [-Wvla] 41 | double res_dh[lenStrat]; | ^~~~~~ foo_mrmr_ensemble_surv.cpp:48:21: warning: ISO C++ forbids variable length array ‘ixs’ [-Wvla] 48 | int ixs[lenStrat]; | ^~~ foo_mrmr_ensemble_surv.cpp:64:24: warning: ISO C++ forbids variable length array ‘xs’ [-Wvla] 64 | double xs[Ns]; | ^~ foo_mrmr_ensemble_surv.cpp:72:21: warning: ISO C++ forbids variable length array ‘cls’ [-Wvla] 72 | int cls[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:80:24: warning: ISO C++ forbids variable length array ‘sts’ [-Wvla] 80 | double sts[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:88:21: warning: ISO C++ forbids variable length array ‘ses’ [-Wvla] 88 | int ses[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:96:24: warning: ISO C++ forbids variable length array ‘weightss’ [-Wvla] 96 | double weightss[Ns]; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:104:24: warning: ISO C++ forbids variable length array ‘chs’ [-Wvla] 104 | double chs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:105:24: warning: ISO C++ forbids variable length array ‘dhs’ [-Wvla] 105 | double dhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:106:24: warning: ISO C++ forbids variable length array ‘uhs’ [-Wvla] 106 | double uhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:107:24: warning: ISO C++ forbids variable length array ‘rphs’ [-Wvla] 107 | double rphs[Ns]; | ^~~~ foo_mrmr_ensemble_surv.cpp:106:24: warning: variable ‘uhs’ set but not used [-Wunused-but-set-variable] 106 | double uhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:107:24: warning: variable ‘rphs’ set but not used [-Wunused-but-set-variable] 107 | double rphs[Ns]; | ^~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)’: foo_mrmr_ensemble_surv.cpp:202:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 202 | for(unsigned int i=0; i< size_subset; ++i){ | ~^~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:203:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 203 | for(unsigned int j=0; j< (nvar-1); ++j){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:214:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 214 | for(unsigned int i=0; i< nvar-1; ++i){ | ~^~~~~~~~ foo_mrmr_ensemble_surv.cpp:216:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 216 | for(unsigned int j=i+1; j< nvar-1; ++j){ | ~^~~~~~~~ foo_mrmr_ensemble_surv.cpp:191:24: warning: unused variable ‘msurv_x’ [-Wunused-variable] 191 | int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:191:34: warning: unused variable ‘ustrat_x’ [-Wunused-variable] 191 | int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_tree(tree&, tree&, double*, int*, int, int, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:351:21: warning: unused variable ‘cnt_back’ [-Wunused-variable] 351 | int cnt_back=cnt2; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:286:14: warning: unused variable ‘nsub’ [-Wunused-variable] 286 | int nsub, *prev_sel,nsamples_boot=nsamples,*to_remove; | ^~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:393:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 393 | for(unsigned int k=0; k< rep_boot; ++k){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:396:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 396 | for(unsigned int i=1;i<= size_boot;++i){ | ~^~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:400:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | for( unsigned int i=0; i< size ; ++i ){ | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:401:49: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 401 | for( unsigned int j=0; j< size ; ++j ){ | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:412:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 412 | for(unsigned int i=0;i< rep_boot;++i){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:419:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 419 | for(unsigned int i=0;i< rep_boot;++i){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:387:17: warning: unused variable ‘mim’ [-Wunused-variable] 387 | double *mim, *boot_val, *mat_info; | ^~~ foo_mrmr_ensemble_surv.cpp: In function ‘double mrnet_onegene(double*, int, int, int*, int, int)’: foo_mrmr_ensemble_surv.cpp:448:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 448 | for(unsigned int j=0;j< nbvar; j++){ | ~^~~~~~~ foo_mrmr_ensemble_surv.cpp:437:22: warning: variable ‘jmax’ set but not used [-Wunused-but-set-variable] 437 | unsigned int jmax; | ^~~~ foo_mrmr_ensemble_surv.cpp:439:16: warning: unused variable ‘max_val’ [-Wunused-variable] 439 | double max_val=-1000; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘int verify_equivalentset_nparents(tree&, tree::pre_order_iterator, tree::pre_order_iterator, tree&, int)’: foo_mrmr_ensemble_surv.cpp:473:13: warning: ISO C++ forbids variable length array ‘vec_old’ [-Wvla] 473 | int vec_old[depth+1]; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:474:13: warning: ISO C++ forbids variable length array ‘mat_res’ [-Wvla] 474 | int mat_res [power((maxnsol+1),(depth))][depth+2]; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:474:13: warning: ISO C++ forbids variable length array ‘mat_res’ [-Wvla] foo_mrmr_ensemble_surv.cpp:476:13: warning: ISO C++ forbids variable length array ‘to_remove’ [-Wvla] 476 | int to_remove[number_leafs]; | ^~~~~~~~~ foo_mrmr_ensemble_surv.cpp:467:14: warning: unused variable ‘found’ [-Wunused-variable] 467 | bool found=false; | ^~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void mrmr_ensemble_one_gene_remove(tree&, tree::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:593:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 593 | for(unsigned int i=1;i<= nsamples;++i){ | ~^~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:596:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 596 | for( unsigned int i=0; i< n; ++i ){ | ~^~~ foo_mrmr_ensemble_surv.cpp:597:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 597 | for( unsigned int j=0; j< n; ++j ){ | ~^~~ foo_mrmr_ensemble_surv.cpp:604:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 604 | for(unsigned int k=0;k< max_elements ;++k){ | ~^~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:646:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 646 | for (unsigned int i=0;i<=max_depth;++i){ | ~^~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:654:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 654 | for(unsigned int k=0;k< n;++k){ | ~^~~ foo_mrmr_ensemble_surv.cpp:657:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 657 | for(unsigned int k=0;k<=max(res_tmp_new.depth(it_local),max_depth) ;++k){ | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:661:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 661 | for(unsigned int k=0;k< n;++k){ | ~^~~ foo_mrmr_ensemble_surv.cpp:578:31: warning: unused variable ‘nsamples_boot’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:578:55: warning: unused variable ‘tmp_val_max_ind’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:578:73: warning: unused variable ‘prev_sel_tmp’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:579:28: warning: unused variable ‘vec_sort’ [-Wunused-variable] 579 | double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:579:70: warning: variable ‘vec_local_max_sd’ set but not used [-Wunused-but-set-variable] 579 | double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr; | ^~~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: foo_mrmr_ensemble_surv.cpp:786:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 786 | for(unsigned int i=0;i< *npredn;++i){ | ~^~~~~~~~~ foo_mrmr_ensemble_surv.cpp:820:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 820 | for(unsigned int k=0;k(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:498:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 498 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:499:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 499 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:499:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 499 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:500:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 500 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:500:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 500 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:501:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 501 | *reinterpret_cast(&w) ^ (*reinterpret_cast(&w) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:501:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 501 | *reinterpret_cast(&w) ^ (*reinterpret_cast(&w) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp: In member function ‘FN_DECIMAL FastNoise::GetWhiteNoise(FN_DECIMAL, FN_DECIMAL, FN_DECIMAL) const’: FastNoise.cpp:507:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 507 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:507:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 507 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:508:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 508 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:508:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 508 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:509:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 509 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:509:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 509 | *reinterpret_cast(&z) ^ (*reinterpret_cast(&z) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp: In member function ‘FN_DECIMAL FastNoise::GetWhiteNoise(FN_DECIMAL, FN_DECIMAL) const’: FastNoise.cpp:515:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 515 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:515:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 515 | *reinterpret_cast(&x) ^ (*reinterpret_cast(&x) >> 16), | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:516:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 516 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp:516:53: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 516 | *reinterpret_cast(&y) ^ (*reinterpret_cast(&y) >> 16)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ FastNoise.cpp: At global scope: FastNoise.cpp:186:12: warning: ‘int FastAbs(int)’ defined but not used [-Wunused-function] 186 | static int FastAbs(int i) { return abs(i); } | ^~~~~~~ g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cubic.cpp -o cubic.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c perlin.cpp -o perlin.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c simplex.cpp -o simplex.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c value.cpp -o value.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c white.cpp -o white.o g++-15 -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c worley.cpp -o worley.o g++-15 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ambient.so FastNoise.o cpp11.o cubic.o perlin.o simplex.o value.o white.o worley.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp81ogQt/R.INSTALL28fc5768561500/ambient/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ambient/00new/ambient/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ambient) begin installing package ‘pamr’ * installing *source* package ‘divDyn’ ... ** this is package ‘divDyn’ version ‘0.8.3’ ** package ‘divDyn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpou4bST/R.INSTALL28fad560ca1260/divDyn/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Engine.cpp -o Engine.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o divDyn.so Engine.o RcppExports.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpou4bST/R.INSTALL28fad560ca1260/divDyn/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-divDyn/00new/divDyn/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (divDyn) begin installing package ‘praznik’ * installing *source* package ‘FSelector’ ... ** this is package ‘FSelector’ version ‘0.34’ ** package ‘FSelector’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FSelector) begin installing package ‘rFerns’ * installing *source* package ‘legendry’ ... ** this is package ‘legendry’ version ‘0.2.4’ ** package ‘legendry’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (legendry) begin installing package ‘rotationForest’ * installing *source* package ‘cjoint’ ... ** this is package ‘cjoint’ version ‘2.1.1’ ** package ‘cjoint’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cjoint) begin installing package ‘RRF’ * installing *source* package ‘rotationForest’ ... ** this is package ‘rotationForest’ version ‘0.1.3’ ** package ‘rotationForest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rotationForest) begin installing package ‘RSNNS’ * installing *source* package ‘bst’ ... ** this is package ‘bst’ version ‘0.3-24’ ** package ‘bst’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bst) begin installing package ‘rucrdtw’ * installing *source* package ‘mldr’ ... ** this is package ‘mldr’ version ‘0.4.3’ ** package ‘mldr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mldr) begin installing package ‘sda’ * installing *source* package ‘Rchoice’ ... ** this is package ‘Rchoice’ version ‘0.3-6’ ** package ‘Rchoice’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rchoice) begin installing package ‘sparseLDA’ * installing *source* package ‘rFerns’ ... ** this is package ‘rFerns’ version ‘5.0.0’ ** package ‘rFerns’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQVHk5T/R.INSTALL29076e62464b1e/rFerns/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ferns.c -o ferns.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rFerns.so ferns.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQVHk5T/R.INSTALL29076e62464b1e/rFerns/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rFerns/00new/rFerns/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rFerns) begin installing package ‘stepPlr’ * installing *source* package ‘frbs’ ... ** this is package ‘frbs’ version ‘3.2-0’ ** package ‘frbs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frbs) begin installing package ‘survAUC’ * installing *source* package ‘sparseLDA’ ... ** this is package ‘sparseLDA’ version ‘0.1-9’ ** package ‘sparseLDA’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparseLDA) begin installing package ‘isopleuros’ * installing *source* package ‘sda’ ... ** this is package ‘sda’ version ‘1.3.9’ ** package ‘sda’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sda) begin installing package ‘unix’ * installing *source* package ‘evtree’ ... ** this is package ‘evtree’ version ‘1.0-8’ ** package ‘evtree’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmprvglkB/R.INSTALL29042748bb0051/evtree/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c container.cpp -o container.o container.cpp: In member function ‘double Container::crossover(int)’: container.cpp:1120:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1120 | if(accept2 == 0) | ^~ container.cpp:1122:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1122 | if( accept2 >= 0){// new tree with "treeNumber2" is accepted | ^~ container.cpp:1130:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1130 | if(accept1 == 0) | ^~ container.cpp:1132:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1132 | if( accept1 >= 0){// new tree with "treeNumber1" is accepted | ^~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c node.cpp -o node.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree.cpp -o tree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c variable.cpp -o variable.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o evtree.so container.o node.o tree.o variable.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmprvglkB/R.INSTALL29042748bb0051/evtree/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-evtree/00new/evtree/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evtree) begin installing package ‘ggpolypath’ * installing *source* package ‘pamr’ ... ** this is package ‘pamr’ version ‘1.57’ ** package ‘pamr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pamr) begin installing package ‘tinyplot’ * installing *source* package ‘RRF’ ... ** this is package ‘RRF’ version ‘1.9.4.1’ ** package ‘RRF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsdvyUn/R.INSTALL2907c1748d0a8c/RRF/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o classTree.c: In function ‘predictClassTree’: classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ classTree.c:425:22: note: ‘cbestsplit’ was declared here 425 | int m, i, j, k, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o regTree.c: In function ‘predictRegTree’: regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ regTree.c:308:22: note: ‘cbestsplit’ was declared here 308 | int i, j, k, m, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable] 64 | int flagReg;//new | ^~~~~~~ regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand, | ^~~~~~ regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:57:36: note: ‘ytree’ was declared here 57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini; | ^~~~~ regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:63:30: note: ‘nodexts’ was declared here 63 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o rf.c: In function ‘classRF’: rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable] 110 | *tp, *wr; | ^~ rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized] 437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:102:43: note: ‘oobpair’ was declared here 102 | *at, *a, *b, *mind, *nind, *jts, *oobpair; | ^~~~~~~ rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized] 385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | errts + jb*(nclass+1), *labelts, nclts, cut); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:96:29: note: ‘nclts’ was declared here 96 | *nrightimp, *nout, *nclts, Ntree; | ^~~~~ gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfsub.f -o rfsub.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsdvyUn/R.INSTALL2907c1748d0a8c/RRF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RRF/00new/RRF/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRF) begin installing package ‘pkgcache’ * installing *source* package ‘stepPlr’ ... ** this is package ‘stepPlr’ version ‘0.93’ ** package ‘stepPlr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyQwn1/R.INSTALL2909549c55f7a/stepPlr/src' gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c cg_descent.f -o cg_descent.o cg_descent.f:527:3: 527 | 500 format (' absolute largest component of gradient: ', d10.4) | 1 Warning: Label 500 at (1) defined but not used [-Wunused-label] cg_descent.f:526:3: 526 | 430 format (' - your cost function has an error') | 1 Warning: Label 430 at (1) defined but not used [-Wunused-label] cg_descent.f:525:3: 525 | 420 format (' - parameter epsilon in cg_descent.parm is too small') | 1 Warning: Label 420 at (1) defined but not used [-Wunused-label] cg_descent.f:524:3: 524 | 410 format (' - your gradient routine has an error') | 1 Warning: Label 410 at (1) defined but not used [-Wunused-label] cg_descent.f:522:3: 522 | 400 format (' - your tolerance (grad_tol = ', d10.4, | 1 Warning: Label 400 at (1) defined but not used [-Wunused-label] cg_descent.f:521:3: 521 | 300 format (' Possible causes of this error message:') | 1 Warning: Label 300 at (1) defined but not used [-Wunused-label] cg_descent.f:520:3: 520 | 270 format (' Debugger is on, function value does not improve') | 1 Warning: Label 270 at (1) defined but not used [-Wunused-label] cg_descent.f:519:3: 519 | 260 format (' Line search fails') | 1 Warning: Label 260 at (1) defined but not used [-Wunused-label] cg_descent.f:518:3: 518 | 250 format (' Search direction not a descent direction') | 1 Warning: Label 250 at (1) defined but not used [-Wunused-label] cg_descent.f:517:3: 517 | 240 format (' Line search fails, too many secant steps') | 1 Warning: Label 240 at (1) defined but not used [-Wunused-label] cg_descent.f:516:3: 516 | 230 format (' Slope always negative in line search') | 1 Warning: Label 230 at (1) defined but not used [-Wunused-label] cg_descent.f:515:3: 515 | 220 format (' Total number of iterations exceed max allow:', i10) | 1 Warning: Label 220 at (1) defined but not used [-Wunused-label] cg_descent.f:514:3: 514 | 210 format (' Terminating since change in function value <= feps*|f|') | 1 Warning: Label 210 at (1) defined but not used [-Wunused-label] cg_descent.f:513:3: 513 | 200 format (' Convergence tolerance for gradient satisfied') | 1 Warning: Label 200 at (1) defined but not used [-Wunused-label] cg_descent.f:660:17: 660 | nrestart = n*restart_fac | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] cg_descent.f:661:14: 661 | maxit = n*maxit_fac | 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] cg_descent.f:1194:35: 1194 | if ( QuadOK .and. (phi .le. fquad) ) then | ^ Warning: ‘fquad’ may be used uninitialized [-Wmaybe-uninitialized] cg_descent.f:1106:49: 1106 | & a0, da0, b0, db0, width, fquad, dphi0, | ^~~~~ note: ‘fquad’ was declared here cg_descent.f:974:35: 974 | if ( QuadOK .and. (phi .le. fquad) ) then | ^ Warning: ‘fquad’ may be used uninitialized [-Wmaybe-uninitialized] cg_descent.f:891:49: 891 | & a0, da0, b0, db0, width, fquad, dphi0, | ^~~~~ note: ‘fquad’ was declared here gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c solveplr.f -o solveplr.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stepPlr_init.c -o stepPlr_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o stepPlr.so cg_descent.o solveplr.o stepPlr_init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyQwn1/R.INSTALL2909549c55f7a/stepPlr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stepPlr/00new/stepPlr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stepPlr) begin installing package ‘asciicast’ * installing *source* package ‘paleotree’ ... ** this is package ‘paleotree’ version ‘3.4.7’ ** package ‘paleotree’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (paleotree) begin installing package ‘BiocVersion’ * installing *source* package ‘praznik’ ... ** this is package ‘praznik’ version ‘11.0.0’ ** package ‘praznik’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEcelNr/R.INSTALL29073c4d71d9d6/praznik/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c praznik.c -o praznik.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o praznik.so praznik.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEcelNr/R.INSTALL29073c4d71d9d6/praznik/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-praznik/00new/praznik/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (praznik) begin installing package ‘Rook’ * installing *source* package ‘phyclust’ ... ** this is package ‘phyclust’ version ‘0.1-34’ ** package ‘phyclust’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTVBtJC/R.INSTALL28e9f31e1bc5fc/phyclust/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust.c -o R_phyclust.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_edist.c -o R_phyclust_edist.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_em_step.c -o R_phyclust_em_step.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_find_consensus.c -o R_phyclust_find_consensus.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_label.c -o R_phyclust_label.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_logL.c -o R_phyclust_logL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_logPt.c -o R_phyclust_logPt.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_qmatrix.c -o R_phyclust_qmatrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_se.c -o R_phyclust_se.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_se_update.c -o R_phyclust_se_update.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_struct.c -o R_phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_phyclust_update.c -o R_phyclust_update.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRand.c -o RRand.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_RRand.c -o R_RRand.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c zzz.c -o zzz.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_ape_nj.c -o phyclust/phyclust_ape_nj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_edist.c -o phyclust/phyclust_edist.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_control.c -o phyclust/phyclust_em_control.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_fp.c -o phyclust/phyclust_em_fp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_phyclust_struct.c -o phyclust/phyclust_em_phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_step.c -o phyclust/phyclust_em_step.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_em_tool.c -o phyclust/phyclust_em_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_file_input.c -o phyclust/phyclust_file_input.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method.c -o phyclust/phyclust_init_method.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_ex.c -o phyclust/phyclust_init_method_ex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_kmed.c -o phyclust/phyclust_init_method_kmed.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_nj.c -o phyclust/phyclust_init_method_nj.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_method_pam.c -o phyclust/phyclust_init_method_pam.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_init_procedure.c -o phyclust/phyclust_init_procedure.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_label.c -o phyclust/phyclust_label.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_logpL.c -o phyclust/phyclust_logpL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_optim_nmmin.c -o phyclust/phyclust_optim_nmmin.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_pam.c -o phyclust/phyclust_pam.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_qmatrix_array.c -o phyclust/phyclust_qmatrix_array.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_qmatrix.c -o phyclust/phyclust_qmatrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_em_step.c -o phyclust/phyclust_se_convolution_em_step.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_em_tool.c -o phyclust/phyclust_se_convolution_em_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_convolution_logpL.c -o phyclust/phyclust_se_convolution_logpL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_fp.c -o phyclust/phyclust_se_em_fp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_phyclust_struct.c -o phyclust/phyclust_se_em_phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_em_tool.c -o phyclust/phyclust_se_em_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_pmatrix.c -o phyclust/phyclust_se_pmatrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_se_struct.c -o phyclust/phyclust_se_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_struct.c -o phyclust/phyclust_struct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c phyclust/phyclust_tool.c -o phyclust/phyclust_tool.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/ms.c -o msdir/ms.o msdir/ms.c: In function ‘gensam’: msdir/ms.c:291:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation] 291 | else if( segsitesin > 0 ) { | ^~~~ msdir/ms.c:337:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’ 337 | free(seglst); | ^~~~ msdir/ms.c: In function ‘gasdev’: msdir/ms.c:1149:22: warning: variable ‘gset’ set but not used [-Wunused-but-set-variable] 1149 | static float gset; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/ms_main.c -o msdir/ms_main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/R_ms_main.c -o msdir/R_ms_main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/R_rand.c -o msdir/R_rand.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c msdir/streec.c -o msdir/streec.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/aamodels.c -o seq-gen/aamodels.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/eigen.c -o seq-gen/eigen.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/evolve.c -o seq-gen/evolve.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/gamma.c -o seq-gen/gamma.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/global.c -o seq-gen/global.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/model.c -o seq-gen/model.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/nucmodels.c -o seq-gen/nucmodels.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/R_seq-gen_main.c -o seq-gen/R_seq-gen_main.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/seq-gen.c -o seq-gen/seq-gen.o seq-gen/seq-gen.c: In function ‘ReadFileParams’: seq-gen/seq-gen.c:715:15: warning: variable ‘i’ set but not used [-Wunused-but-set-variable] 715 | char *i; //WCC:add | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/treefile.c -o seq-gen/treefile.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seq-gen/twister.c -o seq-gen/twister.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -D__HAVE_R_ -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c paml_baseml/baseml.c -o paml_baseml/baseml.o In file included from paml_baseml/baseml.c:130: paml_baseml/treesub.c: In function ‘ReadSeq’: paml_baseml/treesub.c:164:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 164 | char *tmp_c; | ^~~~~ paml_baseml/treesub.c:163:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 163 | int tmp; | ^~~ paml_baseml/treesub.c:160:9: warning: variable ‘str’ set but not used [-Wunused-but-set-variable] 160 | char str[4]=" "; | ^~~ paml_baseml/treesub.c:158:10: warning: variable ‘b’ set but not used [-Wunused-but-set-variable] 158 | int h,b[3]={0}; | ^ paml_baseml/treesub.c: In function ‘IdenticalSeqs’: paml_baseml/treesub.c:806:17: warning: variable ‘same’ set but not used [-Wunused-but-set-variable] 806 | int is,js,h, same,nkept=com.ns; | ^~~~ paml_baseml/treesub.c: In function ‘DistanceIJ’: paml_baseml/treesub.c:1709:16: warning: variable ‘missing’ set but not used [-Wunused-but-set-variable] 1709 | int h, n=4, missing=0; | ^~~~~~~ paml_baseml/treesub.c: In function ‘ReadTreeB’: paml_baseml/treesub.c:2393:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 2393 | char *tmp_c; //WCC:add | ^~~~~ paml_baseml/treesub.c:2392:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2392 | int tmp; //WCC:add | ^~~ paml_baseml/treesub.c: In function ‘ReadTreeN’: paml_baseml/treesub.c:2601:10: warning: variable ‘tmp_c’ set but not used [-Wunused-but-set-variable] 2601 | char *tmp_c; //WCC:add | ^~~~~ paml_baseml/treesub.c:2600:8: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable] 2600 | int tmp; //WCC:add | ^~~ paml_baseml/treesub.c: In function ‘GetInitialsTimes’: paml_baseml/treesub.c:3417:10: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 3417 | for(i=0; iUNREST) GetStepMatrix(line); break; | ^~ paml_baseml/baseml.c:879:62: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 879 | if(com.model>UNREST) GetStepMatrix(line); break; | ^~~~~ paml_baseml/baseml.c: In function ‘SetxBound’: paml_baseml/paml.h:20:18: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 20 | #define FOR(i,n) for(i=0; i Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c f_copulacorrection_LL_rcpp.cpp -o f_copulacorrection_LL_rcpp.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from f_copulacorrection_LL_rcpp.cpp:1: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from ‘struct Eigen::internal::traits > >’ 18 | struct traits > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ 32 | enum { has_direct_access = (traits::Flags & DirectAccessBit) ? 1 : 0, | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from ‘class Eigen::Map >’ 111 | int Level = internal::accessors_level::has_write_access ? WriteAccessors : ReadOnlyAccessors | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:34:37: required from here 34 | const Eigen::Map A = Rcpp::as >(m_data_exo_endo); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ 24 | ? PlainObjectType::ColsAtCompileTime | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ 32 | enum { has_direct_access = (traits::Flags & DirectAccessBit) ? 1 : 0, | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from ‘class Eigen::Map >’ 111 | int Level = internal::accessors_level::has_write_access ? WriteAccessors : ReadOnlyAccessors | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:34:37: required from here 34 | const Eigen::Map A = Rcpp::as >(m_data_exo_endo); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase >, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ 94 | template class Map | ^~~ f_copulacorrection_LL_rcpp.cpp:34:37: required from here 34 | const Eigen::Map A = Rcpp::as >(m_data_exo_endo); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Map.h:24:49: required from ‘struct Eigen::internal::traits > >’ 24 | ? PlainObjectType::ColsAtCompileTime | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:48: required from ‘struct Eigen::internal::accessors_level > >’ 32 | enum { has_direct_access = (traits::Flags & DirectAccessBit) ? 1 : 0, | ^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:111:75: required from ‘class Eigen::Map >’ 111 | int Level = internal::accessors_level::has_write_access ? WriteAccessors : ReadOnlyAccessors | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:35:37: required from here 35 | const Eigen::Map B = Rcpp::as >(params_endo_exo); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from ‘class Eigen::MapBase >, 1>’ 223 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from ‘class Eigen::Map >’ 94 | template class Map | ^~~ f_copulacorrection_LL_rcpp.cpp:35:37: required from here 35 | const Eigen::Map B = Rcpp::as >(params_endo_exo); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, Eigen::Map >, 0>, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, Eigen::Map >, 0> >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, Eigen::Map >, 0> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:120:7: required from ‘class Eigen::internal::dense_product_base >, Eigen::Map >, 0, 7>’ 120 | class dense_product_base | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:152:7: required from ‘class Eigen::ProductImpl >, Eigen::Map >, 0, Eigen::Dense>’ 152 | class ProductImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Product.h:71:7: required from ‘class Eigen::Product >, Eigen::Map >, 0>’ 71 | class Product : public ProductImpl<_Lhs,_Rhs,Option, | ^~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:43: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:347:30: required from ‘Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Scalar = double]’ 347 | return derived() = Constant(rows(), cols(), val); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:548:10: required from ‘Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]’ 548 | return setConstant(Scalar(0)); | ^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:16: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, false> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, 1, -1, false>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, 1, -1, false, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, -1, 1, true>, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, -1, 1, true> >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, -1, 1, true> >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase >, -1, 1, true>, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from ‘class Eigen::internal::BlockImpl_dense >, -1, 1, true, true>’ 329 | class BlockImpl_dense | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:333: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:87:38: required from ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 87 | typedef typename Traits::LhsPacket LhsPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map >; Rhs = Eigen::Map >; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ 252 | general_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | ::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 254 | actualLhs.rows(), actualLhs.cols(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | dest.data(), 1, | ~~~~~~~~~~~~~~~ 258 | compatibleAlpha); | ~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Scalar = double]’ 385 | internal::gemv_dense_selector::HasUsableDirectAccess) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 | >::run(actual_lhs, actual_rhs, dst, alpha); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Derived = Eigen::internal::generic_product_impl >, Eigen::Map >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ 361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); } | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Derived = Eigen::internal::generic_product_impl >, Eigen::Map >, Eigen::DenseShape, Eigen::DenseShape, 7>]’ 349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:91:42: required from ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 91 | typedef typename HalfTraits::LhsPacket LhsPacketHalf; | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map >; Rhs = Eigen::Map >; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ 252 | general_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | ::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 254 | actualLhs.rows(), actualLhs.cols(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | dest.data(), 1, | ~~~~~~~~~~~~~~~ 258 | compatibleAlpha); | ~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Scalar = double]’ 385 | internal::gemv_dense_selector::HasUsableDirectAccess) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 | >::run(actual_lhs, actual_rhs, dst, alpha); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Derived = Eigen::internal::generic_product_impl >, Eigen::Map >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ 361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); } | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Derived = Eigen::internal::generic_product_impl >, Eigen::Map >, Eigen::DenseShape, Eigen::DenseShape, 7>]’ 349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h: In instantiation of ‘class Eigen::internal::gemv_traits’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:95:45: required from ‘struct Eigen::internal::general_matrix_vector_product, 0, false, double, Eigen::internal::const_blas_data_mapper, false, 0>’ 95 | typedef typename QuarterTraits::LhsPacket LhsPacketQuarter; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:253:134: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map >; Rhs = Eigen::Map >; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ 252 | general_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 | ::run( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 254 | actualLhs.rows(), actualLhs.cols(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 | LhsMapper(actualLhs.data(), actualLhs.outerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 | RhsMapper(actualRhs.data(), actualRhs.innerStride()), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 | dest.data(), 1, | ~~~~~~~~~~~~~~~ 258 | compatibleAlpha); | ~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: required from ‘static void Eigen::internal::generic_product_impl::scaleAndAddTo(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Scalar = double]’ 385 | internal::gemv_dense_selector::HasUsableDirectAccess) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 | >::run(actual_lhs, actual_rhs, dst, alpha); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:361:27: required from ‘static void Eigen::internal::generic_product_impl_base::scaleAndAddTo(Dst&, const Lhs&, const Rhs&, const Scalar&) [with Dst = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Derived = Eigen::internal::generic_product_impl >, Eigen::Map >, Eigen::DenseShape, Eigen::DenseShape, 7>; Scalar = double]’ 361 | { Derived::scaleAndAddTo(dst,lhs,rhs,alpha); } | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:349:33: required from ‘static void Eigen::internal::generic_product_impl_base::evalTo(Dst&, const Lhs&, const Rhs&) [with Dst = Eigen::Matrix; Lhs = Eigen::Map >; Rhs = Eigen::Map >; Derived = Eigen::internal::generic_product_impl >, Eigen::Map >, Eigen::DenseShape, Eigen::DenseShape, 7>]’ 349 | { dst.setZero(); scaleAndAddTo(dst, lhs, rhs, Scalar(1)); } | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:148:43: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:44:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 44 | PACKET_DECL_COND_PREFIX(_, Lhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:45:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 45 | PACKET_DECL_COND_PREFIX(_, Rhs, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:46:27: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] 46 | PACKET_DECL_COND_PREFIX(_, Res, _PacketSize); | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:42:3: note: in definition of macro ‘PACKET_DECL_COND_PREFIX’ 42 | prefix ## name ## Packet | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 51 | Vectorizable = unpacket_traits<_LhsPacket>::vectorizable && | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:51:53: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 52 | unpacket_traits<_RhsPacket>::vectorizable && | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:52:38: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:42: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 53 | int(unpacket_traits<_LhsPacket>::size)==int(unpacket_traits<_RhsPacket>::size), | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:53:82: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 54 | LhsPacketSize = Vectorizable ? unpacket_traits<_LhsPacket>::size : 1, | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:54:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 55 | RhsPacketSize = Vectorizable ? unpacket_traits<_RhsPacket>::size : 1, | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:55:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 56 | ResPacketSize = Vectorizable ? unpacket_traits<_ResPacket>::size : 1 | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:56:69: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 59 | typedef typename conditional::type LhsPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:59:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 60 | typedef typename conditional::type RhsPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:60:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] 61 | typedef typename conditional::type ResPacket; | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/products/GeneralMatrixVector.h:61:73: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 2, Eigen::Stride<0, 0> >, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, 2, Eigen::Stride<0, 0> > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, 2, Eigen::Stride<0, 0> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from ‘class Eigen::MapBase, 2, Eigen::Stride<0, 0> >, 0>’ 37 | template class MapBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Matrix >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Matrix > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Matrix > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from ‘class Eigen::CwiseNullaryOp, const Eigen::Matrix >’ 60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp >::type, internal::no_assignment_operator | ^~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from ‘struct Eigen::internal::traits, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ 38 | >::type Scalar; | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> >, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Map, 2, Eigen::Stride<0, 0> > >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/GeneralProduct.h:296:40: required from ‘static void Eigen::internal::gemv_dense_selector<2, 0, true>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Map >; Rhs = Eigen::Map >; Dest = Eigen::Matrix; typename Dest::Scalar = double]’ 296 | dest.matrix() += actualAlpha * MappedDest(actualDestPtr, dest.size()); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/ProductEvaluators.h:388:34: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from ‘class Eigen::DenseCoeffsBase >, 1, -1, false> >, 2>’ 481 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >, 1, -1, false> > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >, 1, -1, false> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Transpose.h:118:37: required from ‘class Eigen::TransposeImpl >, 1, -1, false>, Eigen::Dense>’ 118 | template class TransposeImpl | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from ‘class Eigen::Transpose >, 1, -1, false> >’ 52 | template class Transpose | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:50:23: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> >, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> > >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> > >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from ‘class Eigen::CwiseBinaryOpImpl, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true>, Eigen::Dense>’ 148 | class CwiseBinaryOpImpl | ^~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from ‘class Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> >’ 77 | class CwiseBinaryOp : | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:50:56: required from ‘static Eigen::internal::dot_nocheck::ResScalar Eigen::internal::dot_nocheck::run(const Eigen::MatrixBase&, const Eigen::MatrixBase&) [with T = Eigen::Block >, 1, -1, false>; U = Eigen::Block >, -1, 1, true>; ResScalar = double]’ 50 | return a.transpose().template binaryExpr(b).sum(); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Dot.h:84:58: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:277: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, 1, -1, false> >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, false> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:311:41: required from ‘struct Eigen::internal::unary_evaluator >, 1, -1, false> >, Eigen::internal::IndexBased, double>’ 311 | CoeffReadCost = evaluator::CoeffReadCost, | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, false> > >’ 90 | struct evaluator : public unary_evaluator | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, 1, -1, false> > >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:41: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: [ skipping 16 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of ‘struct Eigen::internal::evaluator >, -1, 1, true> >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:100:8: required from ‘struct Eigen::internal::evaluator >, -1, 1, true> >’ 100 | struct evaluator | ^~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:739:78: required from ‘struct Eigen::internal::binary_evaluator, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> >, Eigen::internal::IndexBased, Eigen::internal::IndexBased, double, double>’ 739 | CoeffReadCost = int(evaluator::CoeffReadCost) + int(evaluator::CoeffReadCost) + int(functor_traits::Cost), | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:722:8: required from ‘struct Eigen::internal::evaluator, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> > >’ 722 | struct evaluator > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from ‘class Eigen::internal::redux_evaluator, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> > >’ 357 | class redux_evaluator : public internal::evaluator<_XprType> | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from ‘typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseBinaryOp, const Eigen::Transpose >, 1, -1, false> >, const Eigen::Block >, -1, 1, true> >; typename Eigen::internal::traits::Scalar = double]’ 414 | ThisEvaluator thisEval(derived()); | ^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenWrap.h:110:39: required from ‘SEXPREC* Rcpp::RcppEigen::eigen_wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 110 | return eigen_wrap_is_plain( obj, | ~~~~~~~~~~~~~~~~~~~^~~~~~ 111 | typename is_plain::type() | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 | ) ; | ~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:776:49: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_eigen(const T&, Rcpp::traits::true_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::true_type = Rcpp::traits::integral_constant]’ 776 | return ::Rcpp::RcppEigen::eigen_wrap(object); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:787:39: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch_unknown_importable(const T&, Rcpp::traits::false_type) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*; Rcpp::traits::false_type = Rcpp::traits::integral_constant]’ 787 | return wrap_dispatch_eigen(object, typename traits::is_eigen_base::type()); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:807:52: required from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_unknown_tag) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 807 | return wrap_dispatch_unknown_importable(object, typename ::Rcpp::traits::is_importer::type()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38: required from ‘SEXPREC* Rcpp::wrap(const T&) [with T = Eigen::Product >, Eigen::Map >, 0>; SEXP = SEXPREC*]’ 30 | return internal::wrap_dispatch( object, typename ::Rcpp::traits::wrap_type_traits::wrap_category() ) ; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ f_copulacorrection_LL_rcpp.cpp:38:40: required from here 38 | NumericVector matMultRes = Rcpp::wrap(A*B); | ~~~~~~~~~~^~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 1071 | PacketAlignment = unpacket_traits::alignment, | ^~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o REndo.so RcppExports.o f_copulacorrection_LL_rcpp.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmplmsh7e/R.INSTALL2901155b10193c/REndo/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-REndo/00new/REndo/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (REndo) begin installing package ‘randomNames’ * installing *source* package ‘baizer’ ... ** this is package ‘baizer’ version ‘0.8.0’ ** package ‘baizer’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (baizer) begin installing package ‘aion’ * installing *source* package ‘tinyplot’ ... ** this is package ‘tinyplot’ version ‘0.5.0’ ** package ‘tinyplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tinyplot) begin installing package ‘tern’ * installing *source* package ‘extrafont’ ... ** this is package ‘extrafont’ version ‘0.20’ ** package ‘extrafont’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (extrafont) begin installing package ‘matrixsampling’ * installing *source* package ‘osfr’ ... ** this is package ‘osfr’ version ‘0.2.9’ ** package ‘osfr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (osfr) begin installing package ‘palaeoverse’ * installing *source* package ‘strap’ ... ** this is package ‘strap’ version ‘1.6-1’ ** package ‘strap’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (strap) begin installing package ‘ggpattern’ * installing *source* package ‘argparse’ ... ** this is package ‘argparse’ version ‘2.3.1’ ** package ‘argparse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (argparse) begin installing package ‘doconv’ * installing *source* package ‘rucrdtw’ ... ** this is package ‘rucrdtw’ version ‘0.1.6’ ** package ‘rucrdtw’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpWSXn3O/R.INSTALL2908db246bbb19/rucrdtw/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dtw_functions.cpp -o dtw_functions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ed_functions.cpp -o ed_functions.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rucrdtw.so RcppExports.o dtw_functions.o ed_functions.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpWSXn3O/R.INSTALL2908db246bbb19/rucrdtw/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rucrdtw/00new/rucrdtw/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rucrdtw) begin installing package ‘equatags’ * installing *source* package ‘randomNames’ ... ** this is package ‘randomNames’ version ‘1.6-0.0’ ** package ‘randomNames’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randomNames) begin installing package ‘vwline’ * installing *source* package ‘matrixsampling’ ... ** this is package ‘matrixsampling’ version ‘2.0.0’ ** package ‘matrixsampling’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixsampling) begin installing package ‘aRtsy’ * installing *source* package ‘interval’ ... ** this is package ‘interval’ version ‘1.1-1.0’ ** package ‘interval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (interval) begin installing package ‘dimensio’ * installing *source* package ‘decoupleR’ ... ** this is package ‘decoupleR’ version ‘2.15.0’ ** package ‘decoupleR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (decoupleR) begin installing package ‘tabula’ * installing *source* package ‘doconv’ ... ** this is package ‘doconv’ version ‘0.3.3’ ** package ‘doconv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (doconv) begin installing package ‘brmsmargins’ * installing *source* package ‘equatags’ ... ** this is package ‘equatags’ version ‘0.2.2’ ** package ‘equatags’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (equatags) begin installing package ‘equivalence’ * installing *source* package ‘reqres’ ... ** this is package ‘reqres’ version ‘1.0.0’ ** package ‘reqres’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzeSFq4/R.INSTALL2913545b755e68/reqres/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c reqres.c -o reqres.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o reqres.so reqres.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzeSFq4/R.INSTALL2913545b755e68/reqres/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-reqres/00new/reqres/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (reqres) begin installing package ‘fmeffects’ * installing *source* package ‘aion’ ... ** this is package ‘aion’ version ‘1.6.0’ ** package ‘aion’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aion) begin installing package ‘itsadug’ * installing *source* package ‘auditor’ ... ** this is package ‘auditor’ version ‘1.3.5’ ** package ‘auditor’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (auditor) begin installing package ‘margins’ * installing *source* package ‘BiocNeighbors’ ... ** this is package ‘BiocNeighbors’ version ‘2.3.1’ ** package ‘BiocNeighbors’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpfh2FA7/R.INSTALL28f042161df014/BiocNeighbors/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c annoy.cpp -o annoy.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c exhaustive.cpp -o exhaustive.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c find_mutual_nns.cpp -o find_mutual_nns.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c generics.cpp -o generics.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c hnsw.cpp -o hnsw.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmknn.cpp -o kmknn.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/assorthead/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c vptree.cpp -o vptree.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BiocNeighbors.so RcppExports.o annoy.o exhaustive.o find_mutual_nns.o generics.o hnsw.o kmknn.o vptree.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpfh2FA7/R.INSTALL28f042161df014/BiocNeighbors/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BiocNeighbors/00new/BiocNeighbors/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BiocNeighbors) begin installing package ‘adabag’ * installing *source* package ‘pkgcache’ ... ** this is package ‘pkgcache’ version ‘2.2.4’ ** package ‘pkgcache’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpU0mRBi/R.INSTALL290c9050fce80b/pkgcache/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c errors.c -o errors.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lib.c -o lib.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c winfiles.c -o winfiles.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o pkgcache.so errors.o init.o lib.o winfiles.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpU0mRBi/R.INSTALL290c9050fce80b/pkgcache/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-pkgcache/00new/pkgcache/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgcache) begin installing package ‘FDboost’ * installing *source* package ‘ggpattern’ ... ** this is package ‘ggpattern’ version ‘1.2.1’ ** package ‘ggpattern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggpattern) begin installing package ‘fwlplot’ * installing *source* package ‘svglite’ ... ** this is package ‘svglite’ version ‘2.2.2’ ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpmhj9fL/R.INSTALL2911aba96a8e6/svglite/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/systemfonts/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/textshaping/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SvgStream.cpp -o SvgStream.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/systemfonts/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/textshaping/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cpp11.cpp -o cpp11.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/cpp11/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/systemfonts/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/textshaping/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c devSVG.cpp -o devSVG.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o svglite.so SvgStream.o cpp11.o devSVG.o -lpng -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpmhj9fL/R.INSTALL2911aba96a8e6/svglite/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-svglite/00new/svglite/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (svglite) begin installing package ‘detectseparation’ * installing *source* package ‘dimensio’ ... ** this is package ‘dimensio’ version ‘0.14.1’ ** package ‘dimensio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dimensio) begin installing package ‘incidence’ * installing *source* package ‘equivalence’ ... ** this is package ‘equivalence’ version ‘0.8.2’ ** package ‘equivalence’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpQwHLud/R.INSTALL29176b623c35c2/equivalence/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c equivalence_init.c -o equivalence_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sumU.c -o sumU.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sumW.c -o sumW.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sumXXY.c -o sumXXY.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sumXYY.c -o sumXYY.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sumq.c -o sumq.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o equivalence.so equivalence_init.o sumU.o sumW.o sumXXY.o sumXYY.o sumq.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpQwHLud/R.INSTALL29176b623c35c2/equivalence/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-equivalence/00new/equivalence/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (equivalence) begin installing package ‘UCell’ * installing *source* package ‘tabula’ ... ** this is package ‘tabula’ version ‘3.3.2’ ** package ‘tabula’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tabula) begin installing package ‘ssdtools’ * installing *source* package ‘margins’ ... ** this is package ‘margins’ version ‘0.3.28’ ** package ‘margins’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (margins) begin installing package ‘texPreview’ * installing *source* package ‘mlr3fselect’ ... ** this is package ‘mlr3fselect’ version ‘1.4.0’ ** package ‘mlr3fselect’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3fselect) begin installing package ‘bindrcpp’ * installing *source* package ‘palaeoverse’ ... ** this is package ‘palaeoverse’ version ‘1.4.0’ ** package ‘palaeoverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (palaeoverse) begin installing package ‘Claddis’ * installing *source* package ‘fwlplot’ ... ** this is package ‘fwlplot’ version ‘0.3.0’ ** package ‘fwlplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fwlplot) begin installing package ‘fiery’ * installing *source* package ‘blockCV’ ... ** this is package ‘blockCV’ version ‘3.2-0’ ** package ‘blockCV’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzzCk8p/R.INSTALL2912d82f26d6e3/blockCV/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nndm.cpp -o nndm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c similarity.cpp -o similarity.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o blockCV.so RcppExports.o nndm.o similarity.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzzCk8p/R.INSTALL2912d82f26d6e3/blockCV/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-blockCV/00new/blockCV/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (blockCV) begin installing package ‘firesale’ * installing *source* package ‘incidence’ ... ** this is package ‘incidence’ version ‘1.7.6’ ** package ‘incidence’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (incidence) begin installing package ‘routr’ * installing *source* package ‘detectseparation’ ... ** this is package ‘detectseparation’ version ‘0.3’ ** package ‘detectseparation’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (detectseparation) begin installing package ‘DCchoice’ * installing *source* package ‘texPreview’ ... ** this is package ‘texPreview’ version ‘2.1.0’ ** package ‘texPreview’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (texPreview) begin installing package ‘mhurdle’ * installing *source* package ‘textmineR’ ... ** this is package ‘textmineR’ version ‘3.0.6’ ** package ‘textmineR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUqprRn/R.INSTALL28f0f216dd3ddd/textmineR/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalcLikelihoodC.cpp -o CalcLikelihoodC.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CalcSumSquares.cpp -o CalcSumSquares.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Dtm2DocsC.cpp -o Dtm2DocsC.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c HellingerMat.cpp -o HellingerMat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Hellinger_cpp.cpp -o Hellinger_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c JSD_cpp.cpp -o JSD_cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c JSDmat.cpp -o JSDmat.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c lda_c_functions.cpp -o lda_c_functions.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o textmineR.so CalcLikelihoodC.o CalcSumSquares.o Dtm2DocsC.o HellingerMat.o Hellinger_cpp.o JSD_cpp.o JSDmat.o RcppExports.o lda_c_functions.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUqprRn/R.INSTALL28f0f216dd3ddd/textmineR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-textmineR/00new/textmineR/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (textmineR) begin installing package ‘mlr3verse’ * installing *source* package ‘itsadug’ ... ** this is package ‘itsadug’ version ‘2.4.1’ ** package ‘itsadug’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (itsadug) begin installing package ‘EpiEstim’ * installing *source* package ‘firesale’ ... ** this is package ‘firesale’ version ‘0.1.0’ ** package ‘firesale’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firesale) begin installing package ‘infercnv’ * installing *source* package ‘robustlmm’ ... ** this is package ‘robustlmm’ version ‘3.3-3’ ** package ‘robustlmm’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpeIs67O/R.INSTALL29018a682fe5cf/robustlmm/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/robustbase/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Integration.cpp -o Integration.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/robustbase/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PsiFunction.cpp -o PsiFunction.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/robustbase/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c local_stubs.c -o local_stubs.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/robustbase/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c misc.cpp -o misc.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/robustbase/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rlmerMatrixUtils.cpp -o rlmerMatrixUtils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DSTRICT_R_HEADERS -DUSE_FC_LEN_T -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/robustbase/include' -I'/home/hornik/tmp/R-d-gcc-15/library/Matrix/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c robustlmm_init.cpp -o robustlmm_init.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o robustlmm.so Integration.o PsiFunction.o local_stubs.o misc.o rlmerMatrixUtils.o robustlmm_init.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpeIs67O/R.INSTALL29018a682fe5cf/robustlmm/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-robustlmm/00new/robustlmm/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (robustlmm) begin installing package ‘topics’ * installing *source* package ‘routr’ ... ** this is package ‘routr’ version ‘1.0.0’ ** package ‘routr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (routr) begin installing package ‘firesafety’ * installing *source* package ‘ordbetareg’ ... ** this is package ‘ordbetareg’ version ‘0.8’ ** package ‘ordbetareg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ordbetareg) * installing *source* package ‘DCchoice’ ... ** this is package ‘DCchoice’ version ‘0.2.0’ ** package ‘DCchoice’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DCchoice) * installing *source* package ‘fiery’ ... ** this is package ‘fiery’ version ‘1.3.0’ ** package ‘fiery’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fiery) * installing *source* package ‘FDboost’ ... ** this is package ‘FDboost’ version ‘1.1-3’ ** package ‘FDboost’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FDboost) * installing *source* package ‘fmeffects’ ... ** this is package ‘fmeffects’ version ‘0.1.4’ ** package ‘fmeffects’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fmeffects) * installing *source* package ‘firesafety’ ... ** this is package ‘firesafety’ version ‘0.1.0’ ** package ‘firesafety’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (firesafety) * installing *source* package ‘adabag’ ... ** this is package ‘adabag’ version ‘5.1’ ** package ‘adabag’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adabag) * installing *source* package ‘tern’ ... ** this is package ‘tern’ version ‘0.9.9’ ** package ‘tern’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tern) * installing *source* package ‘mhurdle’ ... ** this is package ‘mhurdle’ version ‘1.3-1’ ** package ‘mhurdle’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRqrKzq/R.INSTALL291de430e832e9/mhurdle/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c ptnorm.f -o ptnorm.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mhurdle.so init.o ptnorm.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRqrKzq/R.INSTALL291de430e832e9/mhurdle/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mhurdle/00new/mhurdle/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mhurdle) * installing *source* package ‘mlr3verse’ ... ** this is package ‘mlr3verse’ version ‘0.3.1’ ** package ‘mlr3verse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mlr3verse) * installing *source* package ‘bindrcpp’ ... ** this is package ‘bindrcpp’ version ‘0.2.3’ ** package ‘bindrcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpzc3AhJ/R.INSTALL291b9dc4db194/bindrcpp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/plogr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/plogr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c create.cpp -o create.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/plogr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c plogr.cpp -o plogr.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I../inst/include -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/plogr/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c test.cpp -o test.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o bindrcpp.so RcppExports.o create.o plogr.o test.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpzc3AhJ/R.INSTALL291b9dc4db194/bindrcpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-bindrcpp/00new/bindrcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bindrcpp) * installing *source* package ‘EpiEstim’ ... ** this is package ‘EpiEstim’ version ‘2.2-5’ ** package ‘EpiEstim’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EpiEstim) * installing *source* package ‘Nebulosa’ ... ** this is package ‘Nebulosa’ version ‘1.19.0’ ** package ‘Nebulosa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Nebulosa) * installing *source* package ‘SGPdata’ ... ** this is package ‘SGPdata’ version ‘28.0-0.0’ ** package ‘SGPdata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SGPdata) * installing *source* package ‘Claddis’ ... ** this is package ‘Claddis’ version ‘0.7.0’ ** package ‘Claddis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Claddis) * installing *source* package ‘topics’ ... ** this is package ‘topics’ version ‘0.62’ ** package ‘topics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (topics) * installing *source* package ‘UCell’ ... ** this is package ‘UCell’ version ‘2.13.3’ ** package ‘UCell’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (UCell) * installing *source* package ‘vwline’ ... ** this is package ‘vwline’ version ‘0.2-4’ ** package ‘vwline’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vwline) * installing *source* package ‘FSelectorRcpp’ ... ** this is package ‘FSelectorRcpp’ version ‘0.3.13’ ** package ‘FSelectorRcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXxpbdR/R.INSTALL2904b0156cec0c/FSelectorRcpp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c cutOff.cpp -o cutOff.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c discretize.cpp -o discretize.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c discretizeControl.cpp -o discretizeControl.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c information_gain.cpp -o information_gain.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c support.cpp -o support.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c test-cpp.cpp -o test-cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o FSelectorRcpp.so RcppExports.o cutOff.o discretize.o discretizeControl.o information_gain.o init.o support.o test-cpp.o test-runner.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXxpbdR/R.INSTALL2904b0156cec0c/FSelectorRcpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-FSelectorRcpp/00new/FSelectorRcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FSelectorRcpp) * installing *source* package ‘mvgam’ ... ** this is package ‘mvgam’ version ‘1.1.593’ ** package ‘mvgam’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYYq9zJ/R.INSTALL29004b3114a025/mvgam/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_USE_CURRENT -fpic -g -O2 -Wall -pedantic -mtune=native -c trend_funs.cpp -o trend_funs.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mvgam.so RcppExports.o trend_funs.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYYq9zJ/R.INSTALL29004b3114a025/mvgam/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mvgam/00new/mvgam/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mvgam) * installing *source* package ‘brmsmargins’ ... ** this is package ‘brmsmargins’ version ‘0.2.1’ ** package ‘brmsmargins’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpN4kmq8/R.INSTALL2917083fcc2a5b/brmsmargins/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c integratemvn.cpp -o integratemvn.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c integratere.cpp -o integratere.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lmcpp.cpp -o lmcpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rowbootmeans.cpp -o rowbootmeans.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tab2mat.cpp -o tab2mat.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o brmsmargins.so RcppExports.o integratemvn.o integratere.o lmcpp.o rowbootmeans.o tab2mat.o -fopenmp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpN4kmq8/R.INSTALL2917083fcc2a5b/brmsmargins/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-brmsmargins/00new/brmsmargins/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brmsmargins) * installing *source* package ‘RSNNS’ ... ** this is package ‘RSNNS’ version ‘0.4-17’ ** package ‘RSNNS’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpmSAbU3/R.INSTALL2908754dfbc17f/RSNNS/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RSNNS_init.c -o RSNNS_init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SnnsCLib.cpp -o SnnsCLib.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c SnnsCLibGenericR_util.c -o SnnsCLibGenericR_util.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c SnnsCLibWrapper.cpp -o SnnsCLibWrapper.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c art_ui.cpp -o art_ui.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c arttr_f.cpp -o arttr_f.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bn_JordElm.cpp -o bn_JordElm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bn_art1.cpp -o bn_art1.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bn_art2.cpp -o bn_art2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bn_artmap.cpp -o bn_artmap.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bn_assoz.cpp -o bn_assoz.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c bn_kohonen.cpp -o bn_kohonen.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cc_display.cpp -o cc_display.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cc_glob.cpp -o cc_glob.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cc_learn.cpp -o cc_learn.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cc_modify.cpp -o cc_modify.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c cc_prune.cpp -o cc_prune.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dlvq_learn.cpp -o dlvq_learn.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c func_tbl.cpp -o func_tbl.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c init_f.cpp -o init_f.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kernel.cpp -o kernel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_JordElm.cpp -o kr_JordElm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_amap.cpp -o kr_amap.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_art.cpp -o kr_art.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_art1.cpp -o kr_art1.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_art2.cpp -o kr_art2.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_funcs.cpp -o kr_funcs.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_inversion.cpp -o kr_inversion.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_io.cpp -o kr_io.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_mem.cpp -o kr_mem.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_newpattern.cpp -o kr_newpattern.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_pat_parse.cpp -o kr_pat_parse.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_pat_scan.cpp -o kr_pat_scan.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_td.cpp -o kr_td.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kr_ui.cpp -o kr_ui.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c learn_f.cpp -o learn_f.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c matrix.cpp -o matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c prun_f.cpp -o prun_f.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c remap_f.cpp -o remap_f.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scaled_conj_grad.cpp -o scaled_conj_grad.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stochastic_learn_f.cpp -o stochastic_learn_f.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tacoma_learn.cpp -o tacoma_learn.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tbl_func.cpp -o tbl_func.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c trans_f.cpp -o trans_f.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c u_lrand48.cpp -o u_lrand48.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_USE_C99_IN_CXX -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c update_f.cpp -o update_f.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RSNNS.so RSNNS_init.o SnnsCLib.o SnnsCLibGenericR_util.o SnnsCLibWrapper.o art_ui.o arttr_f.o bn_JordElm.o bn_art1.o bn_art2.o bn_artmap.o bn_assoz.o bn_kohonen.o cc_display.o cc_glob.o cc_learn.o cc_modify.o cc_prune.o dlvq_learn.o func_tbl.o init_f.o kernel.o kr_JordElm.o kr_amap.o kr_art.o kr_art1.o kr_art2.o kr_funcs.o kr_inversion.o kr_io.o kr_mem.o kr_newpattern.o kr_pat_parse.o kr_pat_scan.o kr_td.o kr_ui.o learn_f.o matrix.o prun_f.o remap_f.o scaled_conj_grad.o stochastic_learn_f.o tacoma_learn.o tbl_func.o trans_f.o u_lrand48.o update_f.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpmSAbU3/R.INSTALL2908754dfbc17f/RSNNS/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RSNNS/00new/RSNNS/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSNNS) * installing *source* package ‘infercnv’ ... ** this is package ‘infercnv’ version ‘1.25.0’ ** package ‘infercnv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (infercnv) * installing *source* package ‘castor’ ... ** this is package ‘castor’ version ‘1.8.4’ ** package ‘castor’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8Vesqv/R.INSTALL28e9de2a246919/castor/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c STMathExpression.cpp -o STMathExpression.o STMathExpression.cpp:10: warning: ignoring ‘#pragma mark ’ [-Wunknown-pragmas] 10 | #pragma mark - STMathExpression.cpp:11: warning: ignoring ‘#pragma mark String’ [-Wunknown-pragmas] 11 | #pragma mark String manipulations STMathExpression.cpp:12: warning: ignoring ‘#pragma mark ’ [-Wunknown-pragmas] 12 | #pragma mark STMathExpression.cpp:65: warning: ignoring ‘#pragma mark ’ [-Wunknown-pragmas] 65 | #pragma mark - STMathExpression.cpp:66: warning: ignoring ‘#pragma mark MathExpression’ [-Wunknown-pragmas] 66 | #pragma mark MathExpression STMathExpression.cpp:67: warning: ignoring ‘#pragma mark ’ [-Wunknown-pragmas] 67 | #pragma mark STMathExpression.cpp: In static member function ‘static long int MathExpression::splitBinaryOperatorInverseOrder(const std::string&, long int, long int, const std::vector&)’: STMathExpression.cpp:256:42: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 256 | else if(j==string::npos){ if(!STMath_isReal(expression.substr(0,i-1))) return getLeftMostOfPlusMinusOperatorChain(expression,start,i); } | ~^~~~~~~~~~~~~~ STMathExpression.cpp: In member function ‘std::string MathExpression::parseBlock(const std::string&, long int, long int, const std::vector&, const std::map, long int>&, const std::map, long int>&, long int, bool)’: STMathExpression.cpp:313:105: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 313 | if(isWhiteSpace(expression,start,end)) return "Missing "+(start==0 ? "leading expression" : (end==expression.size()-1 ? "trailing expression" : "expression between '"+expression.substr(0,start)+"' and '"+expression.substr(end+1)+"'")); | ~~~^~~~~~~~~~~~~~~~~~~~~ STMathExpression.cpp:359:37: warning: comparison of integer expressions of different signedness: ‘const long int’ and ‘const std::__cxx11::basic_string::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 359 | if((rightMostBracket==string::npos) || (rightMostBracket&)’: STMathExpression.cpp:463:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 463 | for(long i=0; i&)’: STMathExpression.cpp:500:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 500 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 953 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 957 | for(long i=0; i&) const’: STMathExpression.cpp:981:34: warning: comparison of integer expressions of different signedness: ‘const __gnu_cxx::__alloc_traits, long int>::value_type’ {aka ‘const long int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 981 | if(variableIDs[i]>=x.size()){ variableValues[i]=0; } STMathExpression.cpp: In member function ‘double MathExpression::operator()(const std::vector&, long int, ...) const’: STMathExpression.cpp:1044:34: warning: comparison of integer expressions of different signedness: ‘const __gnu_cxx::__alloc_traits, long int>::value_type’ {aka ‘const long int’} and ‘long unsigned int’ [-Wsign-compare] 1044 | if(variableIDs[i]>=x.size()+numberOfAdditionalVariables){ variableValues[i]=0; } STMathExpression.cpp:1045:39: warning: comparison of integer expressions of different signedness: ‘const __gnu_cxx::__alloc_traits, long int>::value_type’ {aka ‘const long int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1045 | else if(variableIDs[i] >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1195 | for(long i=0; i >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1202 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1258 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1269 | for(long n=0; n&)’: STMathExpression.cpp:1378:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1378 | for(long i=0; i&) const [with TYPE = long int; std::ostream = std::basic_ostream]’: STMathExpression.cpp:961:14: required from here 961 | printTuple(stream, stackArguments[i]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ STMathExpression.cpp:1227:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1227 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 251 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 343 | for(long i=0; i >&)’: phylogenetics_cpp_routines.cpp:366:46: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 366 | while((max_Nparts<0) || (parts.size()::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare] 368 | if(pos==string::npos) break; | ~~~^~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:372:43: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 372 | if((max_Nparts<0) || (parts.size()&, long int)’: phylogenetics_cpp_routines.cpp:469:28: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 469 | for(long n=start; n&)’: phylogenetics_cpp_routines.cpp:716:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 716 | for(long i=0; i&)’: phylogenetics_cpp_routines.cpp:731:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 731 | for(long i=0; i&)’: phylogenetics_cpp_routines.cpp:749:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 749 | for(long i=0; i&)’: phylogenetics_cpp_routines.cpp:756:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 756 | for(long i=0; i&)’: phylogenetics_cpp_routines.cpp:785:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 785 | for(long i=0; i&)’: phylogenetics_cpp_routines.cpp:816:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 816 | for(long i=0; i&, double)’: phylogenetics_cpp_routines.cpp:821:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 821 | for(long i=0; i&, double)’: phylogenetics_cpp_routines.cpp:828:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 828 | for(long i=0; i&)’: phylogenetics_cpp_routines.cpp:838:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 838 | for(long i=0; i&)’: phylogenetics_cpp_routines.cpp:891:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 891 | for(long i=0; i >&, const std::vector >&)’: phylogenetics_cpp_routines.cpp:911:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const long unsigned int’ [-Wsign-compare] 911 | for(long level=0; level, long int>::value_type’ {aka ‘long int’} and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 957 | if(pool2list[pool_index]==list2pool.size()-1){ phylogenetics_cpp_routines.cpp: In function ‘long int get_nearest_index(const std::vector&, long int)’: phylogenetics_cpp_routines.cpp:985:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 985 | for(long i=0; i<(haystack.size()-1); ++i){ | ~^~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::List dense_binary_matrix_row2column_major_CPP(long int, long int, const Rcpp::List&, bool)’: phylogenetics_cpp_routines.cpp:1006:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1006 | for(long i=0; i >&, const lvector&, const dvector&, double, long int)’: phylogenetics_cpp_routines.cpp:1608:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1608 | for(long i=0; i&, const std::vector&, long int, const std::vector&, const std::string&, long int)’: phylogenetics_cpp_routines.cpp:2829:30: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2829 | for(long t=0, g=-1; t&, double, const std::vector&, long int, const std::vector&)’: phylogenetics_cpp_routines.cpp:3269:29: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3269 | for(long t=0, g=0; t&, const std::vector&, long int, const std::vector&)’: phylogenetics_cpp_routines.cpp:3296:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3296 | for(long t=0, g=0, p; t >&, const std::vector >&, const std::vector >&, double)’: phylogenetics_cpp_routines.cpp:5844:40: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5844 | for(long r=0; r&, const double&, const std::vector&, const long int&, std::vector&, std::vector&, std::vector&)’: phylogenetics_cpp_routines.cpp:5924:19: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5924 | for(k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 5956 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8869 | for(long ng=0, og=0; ng::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 8906 | for(long ng=0, og=0; ng&, std::vector, bool, bool)’: phylogenetics_cpp_routines.cpp:9950:56: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9950 | for(long k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 9976 | for(long k=0; k::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 10938 | for(long t=0; t&, const std::vector&, std::vector&)’: phylogenetics_cpp_routines.cpp:12666:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 12666 | for(long q=0; q&, const std::vector&, const tree_context&, dvector&)’: phylogenetics_cpp_routines.cpp:12788:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 12788 | for(long q=0, clade; q&, const std::vector&, const std::vector&, bool, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:12894:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 12894 | for(long t=0; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 12925 | for(long q=0; q&, const std::vector&, const std::vector&, bool, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:13013:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13013 | for(long t=0; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13044 | for(long q=1; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13072 | for(long q=0; q&, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:13134:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13134 | for(long t=0; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13164 | for(long q=0; q&, const std::vector&, const std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:13256:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13256 | for(long q=0; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13276 | for(long q=0; q&, const std::vector&, const std::vector&, const std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:13387:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13387 | for(long q=0; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13407 | for(long q=0; q&, const std::vector&, long int, double, double, bool, long int, bool)’: phylogenetics_cpp_routines.cpp:13600:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13600 | for(long q=0, clade; q&, const std::vector&, const std::vector&, long int)’: phylogenetics_cpp_routines.cpp:13701:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13701 | for(long q=0, clade; q&, const std::vector&, double, double, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:13858:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13858 | for(long q=0; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13882 | for(long c=0; c::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 13883 | for(long c=0; c&, const std::vector&, std::vector&)’: phylogenetics_cpp_routines.cpp:14028:45: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14028 | for(long q=1, clade, pnode, cnode; q&, const std::vector&)’: phylogenetics_cpp_routines.cpp:14284:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14284 | for(long q=0, clade; q&, long int, long int, long int)’: phylogenetics_cpp_routines.cpp:14439:16: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14439 | while(k&, long int)’: phylogenetics_cpp_routines.cpp:14496:28: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14496 | while(queue_pointer::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14513 | for(long c=0, clade; c&, const std::vector&, long int)’: phylogenetics_cpp_routines.cpp:14558:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14558 | for(long q=0; q&, const std::vector&, const std::vector&, bool, bool, bool, bool)’: phylogenetics_cpp_routines.cpp:15117:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 15117 | for(long c=0; c::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 15134 | for(long q=0; q, bool, const std::vector&, bool)’: phylogenetics_cpp_routines.cpp:15958:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 15958 | for(long t=0; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 15981 | for(long q=1, cnode, pnode; q, bool, const std::vector&, bool)’: phylogenetics_cpp_routines.cpp:16088:29: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16088 | for(long t=0, tip; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16102 | for(long q=1; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16137 | for(long q=1; q&, const std::vector&, double)’: phylogenetics_cpp_routines.cpp:16404:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16404 | for(long q=0; q&, const std::vector&, double, double)’: phylogenetics_cpp_routines.cpp:16514:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16514 | for(long q=0; q&, const std::vector&, const std::vector&, bool, bool)’: phylogenetics_cpp_routines.cpp:16854:38: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16854 | for(long n=0, node; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16864 | for(long n=0, e, pnode, child; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 16928 | for(long q=0, clade, node, absorbing_ancestor, parent, child, e, edge, inedge; q&, const std::vector&, const std::vector&, const std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:17025:48: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 17025 | for(long s=0, clade, inedge, node, e; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 17048 | for(long q=1, clade, node, inedge, e; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 17082 | for(long q=1, clade, inedge; q&, const std::vector&, std::vector&)’: phylogenetics_cpp_routines.cpp:17418:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 17418 | for(long q=0, clade; q&, const std::vector >&, const std::vector >&, const std::string&, const std::string&, bool)’: phylogenetics_cpp_routines.cpp:17877:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 17877 | for(long f=0; f >::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 17878 | if(clade_taxonomies_split[fits[f]].size()==max_precision) precise_fits.push_back(fits[f]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::List tree_from_placements_CPP(long int, long int, long int, std::vector, std::vector, const std::vector&, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:17914:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 17914 | for(long i=0; i&, long int, long int, long int, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:18112:38: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18112 | for(long m=0, Tnode, Rnode; m&, long int, long int, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:18342:60: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18342 | for(long fb=0, fa=-1, f; fb relative_to_absolute_node_ages_CPP(long int, long int, long int, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:18398:44: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18398 | for(long q=1, clade, node, pnode; q propagate_min_ages_upstream_CPP(long int, long int, long int, const std::vector&, const std::vector&, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:18422:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18422 | for(long a=0; a propagate_max_ages_downstream_CPP(long int, long int, long int, const std::vector&, const std::vector&, const std::vector&, const std::vector&)’: phylogenetics_cpp_routines.cpp:18451:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18451 | for(long a=0; a::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18456 | for(long q=0, clade, node, pnode; q, const std::vector&)’: phylogenetics_cpp_routines.cpp:18518:39: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18518 | for(long q=1, clade, parent; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18535 | for(long q=0, clade, node; q, const std::vector&, double, bool, double)’: phylogenetics_cpp_routines.cpp:18601:50: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18601 | for(long q=0, clade, node, edge, child; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 18643 | for(long q=1, clade, parent; q&, const std::vector&, const std::vector&, double, bool, bool, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, double, bool, std::vector&, std::vector&, std::vector&, double&, double&, double&, double&, long int&, std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:19258:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 19258 | for(long q=0; q&, const std::vector&, const std::vector&, double, bool, bool, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, double, std::vector&, double&, double&, double&, double&, long int&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:19571:40: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 19571 | for(long q=0, dominant_state; q&, const std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:20620:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 20620 | for(long q=0, parent; q&, const std::vector&)’: phylogenetics_cpp_routines.cpp:20691:26: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 20691 | for(long fc=0; fc::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 20697 | for(long fc=0; fc&, const std::vector&, const std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:20825:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 20825 | for(long q=0; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 20844 | for(long q=0; q&, const std::vector&)’: phylogenetics_cpp_routines.cpp:20980:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 20980 | for(long t=0; t&, const std::vector&, const std::vector&, const std::vector&, double, bool, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:21210:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 21210 | for(long q=0; q&, const std::vector&, const std::vector&, const Rcpp::ComplexVector&, const Rcpp::ComplexVector&, const Rcpp::ComplexVector&, const std::vector&, const std::string&, const std::vector&, bool, bool, double, double, long int, bool)’: phylogenetics_cpp_routines.cpp:21572:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 21572 | for(long n=0; n::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 21613 | for(long q=0, new_root; q&, const std::vector&, const std::vector&, double, long int, Rcpp::LogicalVector, std::vector, bool)’: phylogenetics_cpp_routines.cpp:22014:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22014 | for(long q=0, node, clade; q&, std::vector, std::vector)’: phylogenetics_cpp_routines.cpp:22070:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22070 | for(long q=0, node, clade; q&, const std::vector&, const std::vector&, bool)’: phylogenetics_cpp_routines.cpp:22244:42: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22244 | for(long q=0, new_root; q&, const std::vector&, const std::vector&, bool)’: phylogenetics_cpp_routines.cpp:22505:30: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 22505 | if(node_states.size()>Nnodes) node_states.resize(Nnodes); | ~~~~~~~~~~~~~~~~~~^~~~~~~ phylogenetics_cpp_routines.cpp:22506:39: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 22506 | if(node_standard_errors.size()>Nnodes) node_standard_errors.resize(Nnodes); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ phylogenetics_cpp_routines.cpp:22507:29: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 22507 | if(node_CI95s.size()>Nnodes) node_CI95s.resize(Nnodes); | ~~~~~~~~~~~~~~~~~^~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::NumericVector apply_BM_parsimony_to_missing_clades_CPP(long int, long int, long int, const std::vector&, Rcpp::LogicalVector, std::vector)’: phylogenetics_cpp_routines.cpp:22548:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22548 | for(long q=0, node, clade; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22583 | for(long i=0, tip; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22602 | for(long i=0, tip; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22622 | for(long i=0, tip; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22824 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22838 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22930 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22943 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22948 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22968 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 22990 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 23013 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 23037 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 23220 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 23233 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 23250 | for(long s=0; s::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 23272 | for(long s=0; s&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, double, double, double, double, double, double, bool, std::vector >&, std::string&, double&, long int&, MuSSEmodelE&, MuSSEmodelD&, std::vector > >&, std::vector >&)’: phylogenetics_cpp_routines.cpp:23521:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 23521 | for(long a=0; a&, const std::vector&, const std::vector&, std::vector, const std::vector&, double, double, double, double, long int, double, bool)’: phylogenetics_cpp_routines.cpp:24346:40: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 24346 | for(long i=0; i&, const std::vector&, const std::vector&, const std::vector&, bool, bool, long int)’: phylogenetics_cpp_routines.cpp:26602:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26602 | for(long q=0; q&, const std::vector&, double, double, double, bool, bool, long int)’: phylogenetics_cpp_routines.cpp:26682:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26682 | for(long q=0; q&, const std::vector&, double, double, double, bool, bool, long int)’: phylogenetics_cpp_routines.cpp:26764:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26764 | for(long q=0; q&, const std::vector&, const std::vector&, double, bool, bool, long int)’: phylogenetics_cpp_routines.cpp:26835:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26835 | for(long q=0; q&, const std::vector&, const std::vector&, const std::vector&, bool, bool, long int)’: phylogenetics_cpp_routines.cpp:26915:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 26915 | for(long q=0; q&, const std::vector&, const std::vector&, double, bool, bool, bool, long int)’: phylogenetics_cpp_routines.cpp:27007:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27007 | for(long q=0; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27119 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27122 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 27128 | if(only_sampled_tips && (sampled_tips.size()::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27165 | for(long new_clade=0; new_clade::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27171 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27174 | for(long i=0; i&, const std::vector&, const std::vector&, bool, bool, long int, bool, bool, bool, bool)’: phylogenetics_cpp_routines.cpp:27259:75: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘const long int’ [-Wsign-compare] 27259 | while(((max_tips<=0) || ((coalescent ? extant_tips.size() : Ntips)::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 27259 | while(((max_tips<=0) || ((coalescent ? extant_tips.size() : Ntips)&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, long int, const std::vector&, const std::vector&, const std::vector&, bool, bool, double, bool, bool, bool, bool)’: phylogenetics_cpp_routines.cpp:27472:100: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 27472 | while(((max_tips<=0) || (Ntips::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 27472 | while(((max_tips<=0) || (Ntips::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 27472 | while(((max_tips<=0) || (Ntips::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27656 | for(long nc=0; nc::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27663 | for(long nc=0; nc::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 27670 | for(long nc=0; nc&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, bool, bool, bool, bool, bool, bool)’: phylogenetics_cpp_routines.cpp:28979:34: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 28979 | for(long nc=0; nc::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 28985 | for(long nc=0; nc::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 28990 | for(long nc=0; nc&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, long int, bool, long int, bool, bool, bool, bool)’: phylogenetics_cpp_routines.cpp:29658:38: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 29658 | for(long stip=0; stip&, double, EdgeLengthUnit, double, double, long int, std::vector&, long int&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&)’: phylogenetics_cpp_routines.cpp:29902:44: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 29902 | if(clade2tail_length.size()<=next_clade) clade2tail_length.resize(next_clade+1); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:29904:42: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 29904 | if(clade2tail_time.size()<=next_clade) clade2tail_time.resize(next_clade+1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:29913:41: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 29913 | for(long orphan=0, clade; orphan&, std::vector&, long int&, std::vector&, std::vector&, std::vector&)’: phylogenetics_cpp_routines.cpp:29966:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘long int’ [-Wsign-compare] 29966 | if(clade_heights.size()<=next_clade) clade_heights.resize(next_clade+1); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘bool generate_gene_tree_in_species_tree_MSC(long int, long int, long int, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::string&, long int, bool, bool, long int, long int&, long int&, long int&, long int&, std::vector&, std::vector&, std::vector&, std::vector&, std::vector&, std::string&)’: phylogenetics_cpp_routines.cpp:30016:64: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30016 | const bool got_allele_counts = (allele_counts.size()==NStips); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ phylogenetics_cpp_routines.cpp:30017:67: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30017 | const bool got_population_sizes = (population_sizes.size()==NSclades); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30018:67: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30018 | const bool got_generation_times = (generation_times.size()==NSclades); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30019:65: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30019 | const bool got_mutation_rates = (mutation_rates.size()==NSclades); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30042:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 30042 | for(long q=0, clade; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 30059 | for(allele=0; allele::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 30144 | for(long orphan=0; orphan&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::string&, long int, bool, bool, long int, bool, bool, double, double, bool)’: phylogenetics_cpp_routines.cpp:30298:83: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30298 | const bool got_population_sizes = (population_sizes.size()==NSclades); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30299:83: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30299 | const bool got_generation_times = (generation_times.size()==NSclades); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30300:81: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30300 | const bool got_mutation_rates = (mutation_rates.size()==NSclades); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30301:80: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30301 | const bool got_allele_counts = (allele_counts.size()==NStips); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~ phylogenetics_cpp_routines.cpp:30302:84: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30302 | const bool got_HGT_rates = (HGT_rates.size()==NSclades); | ~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30303:84: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30303 | const bool got_duplication_rates = (duplication_rates.size()==NSclades); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30304:85: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 30304 | const bool got_loss_rates = (loss_rates.size()==NSclades); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:30325:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 30325 | for(long q=0; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 30332 | for(long q=0, clade; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 30435 | for(long l=0, locus, new_locus; l::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 30461 | for(long l=0, locus; l&, const std::vector&, double, double, double, double, dvector&, dvector&)’: phylogenetics_cpp_routines.cpp:31273:48: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31273 | for(long q=0, parent, child, e, edge; q&, double, double, double, double)’: phylogenetics_cpp_routines.cpp:31386:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31386 | for(long t=1; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31859 | for(long p=0; p&, const std::vector&, const std::vector&, double, long int)’: phylogenetics_cpp_routines.cpp:31901:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31901 | for(long d=0; d&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, long int, long int, const std::vector&, double, long int)’: phylogenetics_cpp_routines.cpp:31939:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31939 | for(long d=0; d&)’: phylogenetics_cpp_routines.cpp:32101:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 32101 | for(long p=0; p >::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 32645 | if(parts.size()<=distances_column){ | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:32673:56: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 32673 | if((max_Nedges>=0) && (distances.size()>=max_Nedges)) break; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘bool char_in_string(char, const std::string&, bool)’: phylogenetics_cpp_routines.cpp:32723:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 32723 | for(long i=0; i::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 32728 | for(long i=0; i >&, const std::vector >&, long int, long int)’: phylogenetics_cpp_routines.cpp:32808:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 32808 | for(long s=0; s]’: phylogenetics_cpp_routines.cpp:5335:29: required from here 5335 | multiply_array_with_scalar(A,factor); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:589:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 589 | for(long i=0; i]’: phylogenetics_cpp_routines.cpp:5530:34: required from here 5530 | epsilon /= get_norm_L2_of_vector(balances) * get_norm_L2_of_inverted_vector(balances); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:4936:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4936 | for(long i=0; i]’: phylogenetics_cpp_routines.cpp:5530:77: required from here 5530 | epsilon /= get_norm_L2_of_vector(balances) * get_norm_L2_of_inverted_vector(balances); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ phylogenetics_cpp_routines.cpp:4944:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 4944 | for(long i=0; i&) [with TYPE = long int]’: phylogenetics_cpp_routines.cpp:8743:48: required from here 8743 | const long NR = (end_c-start_c+1) + vector_sum(dN); | ~~~~~~~~~~^~~~ phylogenetics_cpp_routines.cpp:701:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 701 | for(long i=0; i maxError) && (impCount&, const std::vector&, long int, long int, double, bool, bool, REAL_TYPE&, REAL_TYPE&, REAL_TYPE&, long int&) [with REAL_TYPE = double]’: phylogenetics_cpp_routines.cpp:9335:40: required from here 9335 | if(fitLeastSquares_affine_real_scalar(X, logY, start, end, Xshift[n], false, false, A[n], rate[n], RSS, count[n])){ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:9197:21: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 9197 | if((x.size()<=end) || (y.size()<=end)) return false; | ~~~~~~~~~^~~~~~ phylogenetics_cpp_routines.cpp:9197:40: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘const long int’ [-Wsign-compare] 9197 | if((x.size()<=end) || (y.size()<=end)) return false; | ~~~~~~~~~^~~~~~ phylogenetics_cpp_routines.cpp: In instantiation of ‘std::vector& operator*=(std::vector&, double) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:9769:24: required from here 9769 | Acoeff *= (Ngrid-1.0)/Aend; | ^~~~ phylogenetics_cpp_routines.cpp:3459:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3459 | for(long i=0; i&, std::vector&, std::vector&, std::vector&, bool, const std::string&) [with ARRAY_TYPE = std::vector; std::string = std::__cxx11::basic_string]’: phylogenetics_cpp_routines.cpp:12152:33: required from here 12152 | get_tree_traversal_root_to_tips(Ntips, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ 12153 | Nnodes, | ~~~~~~~ 12154 | Nedges, | ~~~~~~~ 12155 | -1, | ~~~ 12156 | tree_edge, | ~~~~~~~~~~ 12157 | include_tips, | ~~~~~~~~~~~~~ 12158 | false, | ~~~~~~ 12159 | queue, | ~~~~~~ 12160 | node2first_edge, | ~~~~~~~~~~~~~~~~ 12161 | node2last_edge, | ~~~~~~~~~~~~~~~ 12162 | edges, | ~~~~~~ 12163 | false, | ~~~~~~ 12164 | ""); | ~~~ phylogenetics_cpp_routines.cpp:12125:28: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 12125 | while(queue_pointer&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:12798:36: required from here 12798 | const double root_age = vector_max(ages); | ~~~~~~~~~~^~~~~~ phylogenetics_cpp_routines.cpp:779:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 779 | for(long i=0; i&, std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:13867:14: required from here 13867 | qsortIndices(distances_from_root, chronological_clade_order); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:1080:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1080 | for(long n=0; n&) [with TYPE = long int]’: phylogenetics_cpp_routines.cpp:14166:33: required from here 14166 | const long Nsplits = vector_max(node2child_count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:779:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 779 | for(long i=0; i&) [with ARRAY_TYPE = std::vector]’: phylogenetics_cpp_routines.cpp:14809:30: required from here 14809 | sort_tree_edges_root_to_tips( Ntips, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 14810 | Nnodes, | ~~~~~~~ 14811 | Nedges, | ~~~~~~~ 14812 | depth_first_search, | ~~~~~~~~~~~~~~~~~~~ 14813 | root_to_tips, | ~~~~~~~~~~~~~ 14814 | tree_edge, | ~~~~~~~~~~ 14815 | new2old_edge); | ~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:14781:36: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14781 | while(queue_pointer&, std::vector&, std::vector&, long int&, double&) [with ARRAY_INT = std::vector; ARRAY_DOUBLE = std::vector; lvector = std::vector]’: phylogenetics_cpp_routines.cpp:15045:40: required from here 15045 | get_tree_with_collapsed_monofurcations( Ntips, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 15046 | Nnodes, | ~~~~~~~ 15047 | Nedges, | ~~~~~~~ 15048 | root, | ~~~~~ 15049 | force_keep_root, | ~~~~~~~~~~~~~~~~ 15050 | force_keep_nodes, | ~~~~~~~~~~~~~~~~~ 15051 | tree_edge, | ~~~~~~~~~~ 15052 | edge_length, | ~~~~~~~~~~~~ 15053 | new_tree_edge, | ~~~~~~~~~~~~~~ 15054 | new_edge_length, | ~~~~~~~~~~~~~~~~ 15055 | new2old_node, | ~~~~~~~~~~~~~ 15056 | new_root, | ~~~~~~~~~ 15057 | root_shift); | ~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:14941:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14941 | for(long fn=0, node; fn::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14955 | for(long q=0; q::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 14978 | for(long q=0; q&, std::vector&, std::vector&, long int&, long int&, long int&, long int&, long int&, double&) [with ARRAY_INT = std::vector; ARRAY_DOUBLE = std::vector; lvector = std::vector]’: phylogenetics_cpp_routines.cpp:15657:32: required from here 15657 | get_subtree_with_specific_tips( Ntips, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ 15658 | Nnodes, | ~~~~~~~ 15659 | Nedges, | ~~~~~~~ 15660 | tree_edge, | ~~~~~~~~~~ 15661 | edge_length, | ~~~~~~~~~~~~ 15662 | tips_to_keep, | ~~~~~~~~~~~~~ 15663 | collapse_monofurcations, | ~~~~~~~~~~~~~~~~~~~~~~~~ 15664 | force_keep_root, | ~~~~~~~~~~~~~~~~ 15665 | lvector(), | ~~~~~~~~~~ 15666 | new_tree_edge, | ~~~~~~~~~~~~~~ 15667 | new_edge_length, | ~~~~~~~~~~~~~~~~ 15668 | new2old_clade, | ~~~~~~~~~~~~~~ 15669 | new_root, | ~~~~~~~~~ 15670 | old_stem_edge, | ~~~~~~~~~~~~~~ 15671 | Ntips_kept, | ~~~~~~~~~~~ 15672 | Nnodes_kept, | ~~~~~~~~~~~~ 15673 | Nedges_kept, | ~~~~~~~~~~~~ 15674 | root_shift); | ~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:15515:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 15515 | for(long t=0; t::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 15518 | for(long fn=0; fn::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 15591 | for(long fn=0, new_clade; fn; ARRAY_TYPE_D = std::vector; dvector = std::vector]’: phylogenetics_cpp_routines.cpp:16884:26: required from here 16884 | get_distances_from_root(Ntips, Nnodes, Nedges, tree_edge, edge_length, context, clade_times); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:12746:31: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 12746 | for(long q=0, clade; q&, TYPE2, long int) [with TYPE1 = long int; TYPE2 = long int]’: phylogenetics_cpp_routines.cpp:18344:33: required from here 18344 | fa = find_in_ascending_list(membershipsA[nodeA],f,fa+1); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:495:28: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 495 | for(long n=start; n operator/(std::vector, double) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:22813:19: required from here 22813 | shape = initial/initial_mean; | ^~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:3541:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3541 | for(long i=0; i operator*(std::vector, double) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:22876:27: required from here 22876 | rateY = YA - currentY*rateS; | ^~~~~ phylogenetics_cpp_routines.cpp:3441:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3441 | for(long i=0; i operator-(std::vector, const std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:22876:27: required from here 22876 | rateY = YA - currentY*rateS; | ^~~~~ phylogenetics_cpp_routines.cpp:3495:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3495 | for(long i=0; i operator+(std::vector, const std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:22985:66: required from here 22985 | candidate_state = previous_state*(1-lambda) + candidate_state*lambda; | ^~~~~~ phylogenetics_cpp_routines.cpp:3468:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3468 | for(long i=0; i&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:23049:22: required from here 23049 | return contains_nan(state); | ~~~~~~~~~~~~^~~~~~~ phylogenetics_cpp_routines.cpp:874:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 874 | for(long i=0; i& operator*=(std::vector&, const std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:23409:32: required from here 23409 | posteriors[node] *= modelD.initial; | ^~~~~~~ phylogenetics_cpp_routines.cpp:3432:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3432 | for(long i=0; i&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:23430:30: required from here 23430 | const double S = vector_sum(posteriors[node]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:701:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 701 | for(long i=0; i& operator/=(std::vector&, double) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:23431:23: required from here 23431 | posteriors[node] /= S; | ^ phylogenetics_cpp_routines.cpp:3550:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3550 | for(long i=0; i operator*(std::vector, const std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:23439:56: required from here 23439 | loglikelihood += log(vector_sum(posteriors[root_node]*root_prior)); | ^~~~~~~~~~ phylogenetics_cpp_routines.cpp:3423:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3423 | for(long i=0; i&, const std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:23949:38: required from here 23949 | loglikelihood += log(scalar_product(substem_D,substem_prior)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:724:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘const long unsigned int’ [-Wsign-compare] 724 | for(long i=0; i& operator-=(std::vector&, const std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:24348:83: required from here 24348 | dvector coarse_diversification_rates = lambdas; coarse_diversification_rates -= mus; | ^~~ phylogenetics_cpp_routines.cpp:3513:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3513 | for(long i=0; i abs(std::vector) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:24968:48: required from here 24968 | dvector coarse_abs_diversification_rates = abs(coarse_diversification_rates); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:3559:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3559 | for(long i=0; i::getMaxAbs() const [with VALUE_TYPE = double]’: phylogenetics_cpp_routines.cpp:25460:26: required from here 25460 | return lambda.getMaxAbs() + mu.getMaxAbs() + psi.getMaxAbs(); | ~~~~~~~~~~~~~~~~^~ phylogenetics_cpp_routines.cpp:2655:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2655 | for(long i=0; i::getMaxAbs(double, double) const [with VALUE_TYPE = double]’: phylogenetics_cpp_routines.cpp:25465:26: required from here 25465 | return lambda.getMaxAbs(start_time,end_time) + mu.getMaxAbs(start_time,end_time) + psi.getMaxAbs(start_time,end_time); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:2666:32: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 2666 | for(long i=0; i& operator+=(std::vector&, const TYPE&) [with TYPE = long int]’: phylogenetics_cpp_routines.cpp:25888:20: required from here 25888 | NCSAcrossings += 1l; | ^~ phylogenetics_cpp_routines.cpp:3486:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3486 | for(long i=0; i operator-(std::vector, const TYPE&) [with TYPE = long int]’: phylogenetics_cpp_routines.cpp:27131:52: required from here 27131 | lvector force_keep_nodes = sampled_node_clades - Ntips; | ^~~~~ phylogenetics_cpp_routines.cpp:3504:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3504 | for(long i=0; i&, long int) [with TYPE = long int]’: phylogenetics_cpp_routines.cpp:27592:27: required from here 27592 | remove_item_from_vector(extant_tips, tip); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:927:17: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 927 | if(index==list.size()-1){ | ~~~~~^~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In instantiation of ‘void simulate_SBM_on_tree(long int, long int, long int, const std::vector&, const std::vector&, double, const DFUNCTOR&, double, double, dvector&, dvector&) [with DFUNCTOR = PiecewisePolynomial; dvector = std::vector]’: phylogenetics_cpp_routines.cpp:31419:22: required from here 31419 | simulate_SBM_on_tree( Ntips, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ 31420 | Nnodes, | ~~~~~~~ 31421 | Nedges, | ~~~~~~~ 31422 | tree_edge, | ~~~~~~~~~~ 31423 | edge_length, | ~~~~~~~~~~~~ 31424 | radius, | ~~~~~~~ 31425 | diffusivity_integral, | ~~~~~~~~~~~~~~~~~~~~~ 31426 | root_theta, | ~~~~~~~~~~~ 31427 | root_phi, | ~~~~~~~~~ 31428 | clade_theta, | ~~~~~~~~~~~~ 31429 | clade_phi); | ~~~~~~~~~~ phylogenetics_cpp_routines.cpp:31321:48: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 31321 | for(long q=0, parent, child, e, edge; q&, TYPE2) [with TYPE1 = double; TYPE2 = double]’: phylogenetics_cpp_routines.cpp:5409:27: required from ‘long int min_polynomials_for_positive_exponential_of_irreducible_matrix(long int, const ARRAY_TYPE&) [with ARRAY_TYPE = std::vector]’ 5409 | if(find_first_occurrence(sum_of_powers, 0.0)<0) return (p+1); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:21514:94: required from here 21514 | const long min_polynomials = min_polynomials_for_positive_exponential_of_irreducible_matrix(Nstates, transition_matrix); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:477:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 477 | for(long n=0; n operator*(double, std::vector) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:10203:64: required from ‘LinearInterpolationFunctor::LinearInterpolationFunctor(const std::vector&, const std::vector&, bool, const VALUE_TYPE&, const VALUE_TYPE&, bool, double) [with VALUE_TYPE = std::vector]’ 10203 | referenceValues[0] = referenceValues[referenceCount-1] = 0.5*(referenceValues[0] + referenceValues[referenceCount-1]); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:23382:141: required from here 23382 | modelD.E = LinearInterpolationFunctor(modelE.ages,modelE.trajectory,false,modelE.trajectory[0],modelE.trajectory.back(),true,0); | ^ phylogenetics_cpp_routines.cpp:3450:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3450 | for(long i=0; i&, double, const std::vector&, std::vector&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:7467:21: required from ‘bool RungeKutta2(double, double, double, MODEL&, double, double, double, double, long int, double, const PROGRESS_REPORTER&, double, std::string&) [with COORDINATE = std::vector; MODEL = MuSSEmodelE; PROGRESS_REPORTER = ProgressReporter; std::string = std::__cxx11::basic_string]’ 7467 | linear_combination(1.0,currentPoint,current_dt1,k1,point2); // point2 = currentPoint + k1*current_dt1; | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:23484:9: required from here 23483 | bool success = RungeKutta2 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 23484 | (0, // start_time | ^~~~~~~~~~~~~~~~~ 23485 | oldest_age, // end_time | ~~~~~~~~~~~~~~~~~~~~~~~ 23486 | max(0.000001*oldest_age,min(0.2*oldest_age,relative_ODE_step/maxErate)), // default integration time step | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 23487 | modelE, | ~~~~~~~ 23488 | minRecordingTimeStep, | ~~~~~~~~~~~~~~~~~~~~~ 23489 | maxRecordingTimeStep, | ~~~~~~~~~~~~~~~~~~~~~ 23490 | guessNrecordings, | ~~~~~~~~~~~~~~~~~ 23491 | E_value_step, // recordingRelValueStep | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 23492 | 5, // maxTimeStepRefinements | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 23493 | 4, // refinement_factor | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 23494 | ProgressReporter(true), | ~~~~~~~~~~~~~~~~~~~~~~~ 23495 | (runtime_out_seconds>0 ? max(runtime_out_seconds*0.01, runtime_out_seconds+start_runtime-get_thread_monotonic_walltime_seconds()) : 0.0), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 23496 | warningMessage); | ~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:440:24: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 440 | for(long i=0; i&, const std::vector&)’: phylogenetics_cpp_routines.cpp:1331:25: warning: ‘t1’ may be used uninitialized [-Wmaybe-uninitialized] 1331 | W += (t2-t1) * abs(CDFY-CDFX); | ~~~^~~~ phylogenetics_cpp_routines.cpp:1315:32: note: ‘t1’ was declared here 1315 | double CDFX=0, CDFY=0, t1, t2; | ^~ phylogenetics_cpp_routines.cpp: In function ‘double solve_polynomial_via_bisection(const double*, long int, double, double, double, double, double, double, long int)’: phylogenetics_cpp_routines.cpp:2269:16: warning: ‘c’ may be used uninitialized [-Wmaybe-uninitialized] 2269 | return c; // did not converge, but the last c is the best estimate | ^ phylogenetics_cpp_routines.cpp:2215:36: note: ‘c’ was declared here 2215 | double a = Xmin, b = Xmax, c; | ^ phylogenetics_cpp_routines.cpp: In function ‘double legendre_polynomial(long int, double)’: phylogenetics_cpp_routines.cpp:30983:16: warning: ‘Pn’ may be used uninitialized [-Wmaybe-uninitialized] 30983 | return Pn; | ^~ phylogenetics_cpp_routines.cpp:30977:16: note: ‘Pn’ was declared here 30977 | double Pn; | ^~ phylogenetics_cpp_routines.cpp: In function ‘double solve_piecewise_polynomial_bisection(const dvector&, const dvector&, long int, bool, double, double, double, bool, double, double, long int, long int&, long int&)’: phylogenetics_cpp_routines.cpp:2352:16: warning: ‘c’ may be used uninitialized [-Wmaybe-uninitialized] 2352 | return c; // did not converge, but the last c is the best estimate | ^ phylogenetics_cpp_routines.cpp:2290:36: note: ‘c’ was declared here 2290 | double a = Xmin, b = Xmax, c; | ^ phylogenetics_cpp_routines.cpp: In function ‘double solve_piecewise_polynomial_sum_bisection(const dvector&, const std::vector >&, const lvector&, bool, const dvector&, double, double, double, bool, double, double, long int, long int&, long int&)’: phylogenetics_cpp_routines.cpp:2449:16: warning: ‘c’ may be used uninitialized [-Wmaybe-uninitialized] 2449 | return c; // did not converge, but the last c is the best estimate | ^ phylogenetics_cpp_routines.cpp:2382:36: note: ‘c’ was declared here 2382 | double a = Xmin, b = Xmax, c; | ^ phylogenetics_cpp_routines.cpp: In function ‘bool get_dominant_eigenvalue(long int, const dvector&, long int, double, dvector&, double&)’: phylogenetics_cpp_routines.cpp:6040:37: warning: ‘error’ may be used uninitialized [-Wmaybe-uninitialized] 6040 | return (best_error&, double, const std::vector&, const std::vector&, long int, const std::string&, double, double)’: phylogenetics_cpp_routines.cpp:25402:51: warning: ‘W_degree’ may be used uninitialized [-Wmaybe-uninitialized] 25402 | const double origin_W = polynomial_value(W_degree,&refined_W_coeff[origin_rg*(W_degree+1)],oldest_age-age_offset); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:25330:24: note: ‘W_degree’ was declared here 25330 | long I_degree, W_degree, NRG; | ^~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::List HBD_PDR_loglikelihood_CPP(const std::vector&, double, double, const std::vector&, const std::vector&, long int, const std::string&, double, double, std::vector, long int)’: phylogenetics_cpp_routines.cpp:25229:102: warning: ‘Zdegree’ may be used uninitialized [-Wmaybe-uninitialized] 25229 | branching_Z = polynomial_value(Zdegree, &Zcoeff[d][current_g*(Zdegree+1)], branching_age-age_offset); | ~~~~~~~~^~~ phylogenetics_cpp_routines.cpp:25195:14: note: ‘Zdegree’ was declared here 25195 | long Zdegree, EZdegree, Wdegree; | ^~~~~~~ phylogenetics_cpp_routines.cpp:25230:102: warning: ‘Wdegree’ may be used uninitialized [-Wmaybe-uninitialized] 25230 | branching_W = polynomial_value(Wdegree, &Wcoeff[d][current_g*(Wdegree+1)], branching_age-age_offset); | ~~~~~~~~^~~ phylogenetics_cpp_routines.cpp:25195:33: note: ‘Wdegree’ was declared here 25195 | long Zdegree, EZdegree, Wdegree; | ^~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘bool LUDecomposition(TYPE*, long unsigned int, long unsigned int*, int&) [with TYPE = double]’: phylogenetics_cpp_routines.cpp:4676:39: warning: ‘imax’ may be used uninitialized [-Wmaybe-uninitialized] 4676 | pivoting_indices[j] = imax; | ^~~~ phylogenetics_cpp_routines.cpp:4635:16: note: ‘imax’ was declared here 4635 | long i,imax,j,k; | ^~~~ phylogenetics_cpp_routines.cpp: In member function ‘void TreeSpeciationExtinctionModel::get_coalescent_trajectory(double, double, std::vector&) const’: phylogenetics_cpp_routines.cpp:10927:96: warning: ‘coalescent_diversity_at_resolution_age’ may be used uninitialized [-Wmaybe-uninitialized] 10927 | coalescent[t].Pmissing = coalescent_diversity_at_resolution_age/coalescent[t].diversity; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:10904:59: note: ‘coalescent_diversity_at_resolution_age’ was declared here 10904 | double total_diversity_at_resolution_age, coalescent_diversity_at_resolution_age; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::List simulate_deterministic_diversity_growth_CPP(double, double, double, double, double, double, double, double, long int, const std::vector&, const std::vector&, const std::vector&, bool, const std::vector&, double, double, double, double, bool, bool, bool, bool, bool, bool, double)’: phylogenetics_cpp_routines.cpp:11148:86: warning: ‘Pmissing_at_resolution_age’ may be used uninitialized [-Wmaybe-uninitialized] 11148 | const double effective_rarefaction = rarefaction * (1-Pmissing_at_resolution_age); | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:11123:24: note: ‘Pmissing_at_resolution_age’ was declared here 11123 | double Pmissing_at_resolution_age, total_diversity_at_resolution_age, coalescent_diversity_at_resolution_age; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:11156:88: warning: ‘coalescent_diversity_at_resolution_age’ may be used uninitialized [-Wmaybe-uninitialized] 11156 | Pmissing = 1.0 - coalescent_diversity_at_resolution_age/total_diversities[t]; // effective Pmissing, based on coalescent and total diversity after collapsing and rarefaction phylogenetics_cpp_routines.cpp:11123:87: note: ‘coalescent_diversity_at_resolution_age’ was declared here 11123 | double Pmissing_at_resolution_age, total_diversity_at_resolution_age, coalescent_diversity_at_resolution_age; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::List get_trait_richness_collectors_curve_CPP(long int, long int, long int, long int, long int, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, const std::vector&, long int, const std::string&, bool)’: phylogenetics_cpp_routines.cpp:20191:49: warning: ‘tip’ may be used uninitialized [-Wmaybe-uninitialized] 20191 | tip_included[tip] = true; | ^ phylogenetics_cpp_routines.cpp:20054:14: note: ‘tip’ was declared here 20054 | long tip, clade, count_tips_remaining; | ^~~ phylogenetics_cpp_routines.cpp:20151:76: warning: ‘count_tips_remaining’ may be used uninitialized [-Wmaybe-uninitialized] 20151 | long tip_counter = uniformIntWithin(0,count_tips_remaining-1); | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:20054:26: note: ‘count_tips_remaining’ was declared here 20054 | long tip, clade, count_tips_remaining; | ^~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:192, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27, from phylogenetics_cpp_routines.cpp:39: In function ‘SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]’, inlined from ‘SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:471:46, inlined from ‘SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:495:40, inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:744:34, inlined from ‘SEXPREC* Rcpp::wrap(const T&) [with T = double]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap_end.h:30:38, inlined from ‘static SEXPREC* Rcpp::internal::generic_element_converter::get(const T&) [with T = double; int RTYPE = 19]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/converter.h:80:23, inlined from ‘static void Rcpp::Vector::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:530:13, inlined from ‘static void Rcpp::Vector::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:523:46, inlined from ‘static void Rcpp::Vector::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:512:34, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1169:24, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static void Rcpp::Vector::replace_element_impl(iterator&, Rcpp::Shield&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object; TArgs = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1170:29, inlined from ‘static Rcpp::Vector Rcpp::Vector::create__dispatch(Rcpp::traits::true_type, const T& ...) [with T = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1146:29, inlined from ‘static Rcpp::Vector Rcpp::Vector::create(const T& ...) [with T = {Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object, Rcpp::traits::named_object}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/vector/Vector.h:1128:50, inlined from ‘Rcpp::List read_Newick_string_CPP(std::string, bool, bool, bool, bool)’ at phylogenetics_cpp_routines.cpp:19175:39: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include/Rcpp/internal/wrap.h:448:41: warning: ‘root_edge’ may be used uninitialized [-Wmaybe-uninitialized] 448 | r_vector_start(x)[0] = object; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::List read_Newick_string_CPP(std::string, bool, bool, bool, bool)’: phylogenetics_cpp_routines.cpp:19091:29: note: ‘root_edge’ was declared here 19091 | double edge_length, root_edge; | ^~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::List find_edge_splitting_tree_CPP(long int, long int, long int, std::vector, bool, const std::vector&, bool)’: phylogenetics_cpp_routines.cpp:16149:111: warning: ‘best_Ntargets_upstream’ may be used uninitialized [-Wmaybe-uninitialized] 16149 | else if((!descends_from_best_edge[tip]) && (Nnontargets_downstream_per_clade[tip]==1) && targets_should_be_upstream) misplaced_nontargets.push_back(tip); // misplaced upstream non-target | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:16110:30: note: ‘best_Ntargets_upstream’ was declared here 16110 | long best_edge = -1, best_Ntargets_upstream, best_Ntargets_downstream, best_Nmisplaced_targets, best_Nmisplaced_nontargets; | ^~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:16131:42: warning: ‘best_Nmisplaced_targets’ may be used uninitialized [-Wmaybe-uninitialized] 16131 | misplaced_targets.reserve(best_Nmisplaced_targets); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:16110:80: note: ‘best_Nmisplaced_targets’ was declared here 16110 | long best_edge = -1, best_Ntargets_upstream, best_Ntargets_downstream, best_Nmisplaced_targets, best_Nmisplaced_nontargets; | ^~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:16132:45: warning: ‘best_Nmisplaced_nontargets’ may be used uninitialized [-Wmaybe-uninitialized] 16132 | misplaced_nontargets.reserve(best_Nmisplaced_nontargets); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp:16110:105: note: ‘best_Nmisplaced_nontargets’ was declared here 16110 | long best_edge = -1, best_Ntargets_upstream, best_Ntargets_downstream, best_Nmisplaced_targets, best_Nmisplaced_nontargets; | ^~~~~~~~~~~~~~~~~~~~~~~~~~ phylogenetics_cpp_routines.cpp: In function ‘Rcpp::NumericMatrix get_distance_matrix_between_clades_CPP(long int, long int, long int, const std::vector&, const std::vector&, const std::vector&, bool, const std::string&)’: phylogenetics_cpp_routines.cpp:13316:155: warning: ‘mrca’ may be used uninitialized [-Wmaybe-uninitialized] 13316 | distances(i,j) = distance_from_root_per_clade[cladeA] + distance_from_root_per_clade[cladeB] - 2*distance_from_root_per_clade[mrca]; | ^ phylogenetics_cpp_routines.cpp:13289:30: note: ‘mrca’ was declared here 13289 | long cladeA, cladeB, mrca; | ^~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o castor.so RcppExports.o STMathExpression.o phylogenetics_cpp_routines.o registerDynamicSymbol.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8Vesqv/R.INSTALL28e9de2a246919/castor/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-castor/00new/castor/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (castor) begin installing package ‘dispRity’ * installing *source* package ‘dispRity’ ... ** this is package ‘dispRity’ version ‘1.9’ ** package ‘dispRity’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgbaxXY/R.INSTALL2925bb339940b/dispRity/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bitwise.dist.c -o bitwise.dist.o bitwise.dist.c: In function ‘bitwise_hamming’: bitwise.dist.c:73:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable] 73 | int vector1[nc], vector2[nc], orders[nc]; | ^~~~~~ bitwise.dist.c: In function ‘bitwise_manhattan’: bitwise.dist.c:142:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable] 142 | int vector1[nc], vector2[nc], orders[nc]; | ^~~~~~ bitwise.dist.c: In function ‘bitwise_euclidean’: bitwise.dist.c:205:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable] 205 | int vector1[nc], vector2[nc], orders[nc]; | ^~~~~~ bitwise.dist.c: In function ‘bitwise_mord’: bitwise.dist.c:285:35: warning: variable ‘orders’ set but not used [-Wunused-but-set-variable] 285 | int vector1[nc], vector2[nc], orders[nc]; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c char.diff.c -o char.diff.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dispRity.so bitwise.dist.o char.diff.o registerDynamicSymbol.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgbaxXY/R.INSTALL2925bb339940b/dispRity/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dispRity/00new/dispRity/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dispRity) * installing *source* package ‘ssdtools’ ... ** this is package ‘ssdtools’ version ‘2.4.0’ ** package ‘ssdtools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8amrwR/R.INSTALL291b42c6b266f/ssdtools/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:205, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Dense:1, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:28, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigen.h:25, from RcppExports.cpp:4: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument ‘__m128’ [-Wignored-attributes] 49 | template<> struct is_arithmetic<__m128> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument ‘__m128i’ [-Wignored-attributes] 50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument ‘__m128d’ [-Wignored-attributes] 51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; }; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 222 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 228 | template<> struct unpacket_traits { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 1124 | ptranspose(PacketBlock& kernel) { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 1129 | ptranspose(PacketBlock& kernel) { | ^ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:174: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet4f’ {aka ‘__m128’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 16 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument ‘Eigen::internal::Packet2d’ {aka ‘__m128d’} [-Wignored-attributes] 29 | struct conj_helper { \ | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro ‘EIGEN_MAKE_CONJ_HELPER_CPLX_REAL’ 298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:165: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here 24 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(4) float>::half’ {aka ‘__m128’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Core:271: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here 27 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of ‘struct Eigen::internal::find_best_packet’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from ‘struct Eigen::internal::traits >’ 22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar; | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from ‘struct Eigen::internal::traits >’ 266 | Alignment = internal::traits::Alignment, | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here 98 | ResAlignment = traits >::Alignment | ^~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 190 | bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument ‘Eigen::internal::unpacket_traits<__vector(2) double>::half’ {aka ‘__m128d’} [-Wignored-attributes] /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 208 | typedef typename find_best_packet_helper::type>::type type; | ^~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of ‘class Eigen::DenseCoeffsBase, 0>’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from ‘class Eigen::DenseCoeffsBase, 1>’ 302 | class DenseCoeffsBase : public DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from ‘class Eigen::DenseCoeffsBase, 3>’ 555 | class DenseCoeffsBase | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from ‘class Eigen::DenseBase >’ 41 | template class DenseBase | ^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from ‘class Eigen::MatrixBase >’ 48 | template class MatrixBase | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from ‘class Eigen::PlainObjectBase >’ 98 | class PlainObjectBase : public internal::dense_xpr_base::type | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from ‘class Eigen::Matrix’ 178 | class Matrix | ^~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from ‘class Eigen::QuaternionBase >’ 46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType; | ^~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from ‘class Eigen::Quaternion’ 273 | class Quaternion : public QuaternionBase > | ^~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here 102 | { | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 56 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/SparseCore:37, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/Sparse:26, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/RcppEigenForward.h:29: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of ‘class Eigen::SparseMatrixBase >’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from ‘class Eigen::SparseCompressedBase >’ 36 | class SparseCompressedBase | ^~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from ‘class Eigen::SparseMatrix’ 96 | class SparseMatrix | ^~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here 61 | typedef Triplet T; | ^ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument ‘Eigen::internal::packet_traits::type’ {aka ‘__m128d’} [-Wignored-attributes] 47 | >::type PacketReturnType; | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fun.cpp -o fun.o (cd TMB; /home/hornik/tmp/R/bin/Rscript \ --no-save --no-restore compile.R '') Note: Using Makevars in /home/hornik/.R/Makevars-gcc using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp8amrwR/R.INSTALL291b42c6b266f/ssdtools/src/TMB' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include" -I"/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ssdtools_TMBExports -DCPPAD_FRAMEWORK -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/TMB/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ssdtools_TMBExports.cpp -o ssdtools_TMBExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ssdtools_TMBExports.so ssdtools_TMBExports.o -L/home/hornik/tmp/R/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8amrwR/R.INSTALL291b42c6b266f/ssdtools/src/TMB' [1] TRUE g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ssdtools.so RcppExports.o fun.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8amrwR/R.INSTALL291b42c6b266f/ssdtools/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ssdtools/00new/ssdtools/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ssdtools) * installing *source* package ‘aRtsy’ ... ** this is package ‘aRtsy’ version ‘1.0.1’ ** package ‘aRtsy’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4QP67j/R.INSTALL2916006cb1cf32/aRtsy/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_ant.cpp -o canvas_ant.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_chladni.cpp -o canvas_chladni.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_circlemap.cpp -o canvas_circlemap.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_collatz.cpp -o canvas_collatz.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_flame.cpp -o canvas_flame.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_flow.cpp -o canvas_flow.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_maze.cpp -o canvas_maze.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_mesh.cpp -o canvas_mesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_petri.cpp -o canvas_petri.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_phyllotaxis.cpp -o canvas_phyllotaxis.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_planet.cpp -o canvas_planet.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_polylines.cpp -o canvas_polylines.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_recaman.cpp -o canvas_recaman.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_slime.cpp -o canvas_slime.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_smoke.cpp -o canvas_smoke.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_splits.cpp -o canvas_splits.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_squares.cpp -o canvas_squares.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_strokes.cpp -o canvas_strokes.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_swirls.cpp -o canvas_swirls.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_tiles.cpp -o canvas_tiles.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_turmite.cpp -o canvas_turmite.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c canvas_watercolors.cpp -o canvas_watercolors.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c noise.cpp -o noise.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o aRtsy.so RcppExports.o canvas_ant.o canvas_chladni.o canvas_circlemap.o canvas_collatz.o canvas_flame.o canvas_flow.o canvas_maze.o canvas_mesh.o canvas_petri.o canvas_phyllotaxis.o canvas_planet.o canvas_polylines.o canvas_recaman.o canvas_slime.o canvas_smoke.o canvas_splits.o canvas_squares.o canvas_strokes.o canvas_swirls.o canvas_tiles.o canvas_turmite.o canvas_watercolors.o noise.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4QP67j/R.INSTALL2916006cb1cf32/aRtsy/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-aRtsy/00new/aRtsy/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (aRtsy) * installing *source* package ‘GJRM’ ... ** this is package ‘GJRM’ version ‘0.2-6.8’ ** package ‘GJRM’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GJRM) * installing *source* package ‘crs’ ... ** this is package ‘crs’ version ‘0.15-38’ ** package ‘crs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2KsMtq/R.INSTALL29039626023823/crs/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RuniqueCombs.c -o RuniqueCombs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bspline.c -o bspline.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gsl_bspline.c -o gsl_bspline.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c snomadr.cpp -o snomadr.o In file included from ./nomad_src/Direction.hpp:54, from ./nomad_src/Directions.hpp:55, from ./nomad_src/Variable_Group.hpp:54, from ./nomad_src/Signature.hpp:54, from ./nomad_src/Parameters.hpp:59, from ./nomad_src/Eval_Point.hpp:54, from ./nomad_src/Cache_Point.hpp:54, from ./nomad_src/Cache.hpp:63, from ./nomad_src/Barrier.hpp:54, from ./nomad_src/Evaluator_Control.hpp:54, from ./nomad_src/Search.hpp:53, from ./nomad_src/Quad_Model_Evaluator.hpp:54, from ./nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from ./nomad_src/Quad_Model_Search.hpp:55, from ./nomad_src/Mads.hpp:54, from ./nomad_src/nomad.hpp:53, from snomadr.h:51, from snomadr.cpp:32: ./nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ ./nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crs_init.c -o crs_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mgcv.c -o mgcv.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/nomad.cpp -o nomad_src/nomad.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/nomad.hpp:53, from nomad_src/nomad.cpp:50: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Algo_Parameters.cpp -o nomad_src/Algo_Parameters.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Barrier.cpp -o nomad_src/Barrier.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Barrier.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache.cpp -o nomad_src/Cache.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Cache.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache_File_Point.cpp -o nomad_src/Cache_File_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_File_Point.cpp:52: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache_Point.cpp -o nomad_src/Cache_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache_Search.cpp -o nomad_src/Cache_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/Cache_Search.hpp:54, from nomad_src/Cache_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Clock.cpp -o nomad_src/Clock.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Direction.cpp -o nomad_src/Direction.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Directions.cpp -o nomad_src/Directions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Display.cpp -o nomad_src/Display.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Double.cpp -o nomad_src/Double.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Eval_Point.cpp -o nomad_src/Eval_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Eval_Point.cpp:52: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Evaluator.cpp -o nomad_src/Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Evaluator_Control.cpp -o nomad_src/Evaluator_Control.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Evaluator_Control.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Extended_Poll.cpp -o nomad_src/Extended_Poll.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/Extended_Poll.hpp:54, from nomad_src/Extended_Poll.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/L_Curve.cpp -o nomad_src/L_Curve.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/LH_Search.cpp -o nomad_src/LH_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/LH_Search.hpp:54, from nomad_src/LH_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Mads.cpp -o nomad_src/Mads.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/Mads.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/OrthogonalMesh.cpp -o nomad_src/OrthogonalMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Model_Sorted_Point.cpp -o nomad_src/Model_Sorted_Point.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Model_Stats.cpp -o nomad_src/Model_Stats.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Multi_Obj_Evaluator.cpp -o nomad_src/Multi_Obj_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/NelderMead_Search.cpp -o nomad_src/NelderMead_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/NelderMead_Search.hpp:54, from nomad_src/NelderMead_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/NelderMead_Simplex_Eval_Point.cpp -o nomad_src/NelderMead_Simplex_Eval_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/NelderMead_Simplex_Eval_Point.hpp:55, from nomad_src/NelderMead_Simplex_Eval_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Parameters.cpp -o nomad_src/Parameters.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Parameters.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ In file included from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Slave.hpp:54, from nomad_src/Parameters.cpp:52: nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Parameter_Entries.cpp -o nomad_src/Parameter_Entries.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Parameter_Entry.cpp -o nomad_src/Parameter_Entry.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Pareto_Front.cpp -o nomad_src/Pareto_Front.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.hpp:54, from nomad_src/Pareto_Point.hpp:54, from nomad_src/Pareto_Front.hpp:54, from nomad_src/Pareto_Front.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Pareto_Point.cpp -o nomad_src/Pareto_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.hpp:54, from nomad_src/Pareto_Point.hpp:54, from nomad_src/Pareto_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Phase_One_Evaluator.cpp -o nomad_src/Phase_One_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Phase_One_Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Phase_One_Search.cpp -o nomad_src/Phase_One_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Phase_One_Search.hpp:54, from nomad_src/Phase_One_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Point.cpp -o nomad_src/Point.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Priority_Eval_Point.cpp -o nomad_src/Priority_Eval_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Priority_Eval_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Quad_Model.cpp -o nomad_src/Quad_Model.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Quad_Model.hpp:54, from nomad_src/Quad_Model.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Quad_Model_Evaluator.cpp -o nomad_src/Quad_Model_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Quad_Model_Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Quad_Model_Search.cpp -o nomad_src/Quad_Model_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Speculative_Search.hpp:54, from nomad_src/Mads.hpp:55, from nomad_src/Quad_Model_Search.hpp:54, from nomad_src/Quad_Model_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Random_Pickup.cpp -o nomad_src/Random_Pickup.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/RNG.cpp -o nomad_src/RNG.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Sgtelib_Model_Evaluator.cpp -o nomad_src/Sgtelib_Model_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Sgtelib_Model_Manager.hpp:36, from nomad_src/Sgtelib_Model_Evaluator.hpp:37, from nomad_src/Sgtelib_Model_Evaluator.cpp:33: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ In file included from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Sgtelib_Model_Manager.hpp:37: nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Sgtelib_Model_Search.cpp -o nomad_src/Sgtelib_Model_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/LH_Search.hpp:54, from nomad_src/Sgtelib_Model_Search.hpp:36, from nomad_src/Sgtelib_Model_Search.cpp:33: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Sgtelib_Model_Manager.cpp -o nomad_src/Sgtelib_Model_Manager.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Sgtelib_Model_Manager.hpp:36, from nomad_src/Sgtelib_Model_Manager.cpp:32: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ In file included from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Sgtelib_Model_Manager.hpp:37: nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Signature.cpp -o nomad_src/Signature.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Slave.cpp -o nomad_src/Slave.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Slave.hpp:54, from nomad_src/Slave.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Speculative_Search.cpp -o nomad_src/Speculative_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Speculative_Search.hpp:54, from nomad_src/Speculative_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Stats.cpp -o nomad_src/Stats.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/SMesh.cpp -o nomad_src/SMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/TrendMatrix_Line_Search.cpp -o nomad_src/TrendMatrix_Line_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/TrendMatrix_Line_Search.hpp:54, from nomad_src/TrendMatrix_Line_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/GMesh.cpp -o nomad_src/GMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/XMesh.cpp -o nomad_src/XMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/utils.cpp -o nomad_src/utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Variable_Group.cpp -o nomad_src/Variable_Group.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/VNS_Search.cpp -o nomad_src/VNS_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/VNS_Search.hpp:54, from nomad_src/VNS_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/TrainingSet.cpp -o sgtelib_src/TrainingSet.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Parameters.cpp -o sgtelib_src/Surrogate_Parameters.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_KS.cpp -o sgtelib_src/Surrogate_KS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_RBF.cpp -o sgtelib_src/Surrogate_RBF.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_PRS.cpp -o sgtelib_src/Surrogate_PRS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_PRS_EDGE.cpp -o sgtelib_src/Surrogate_PRS_EDGE.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_LOWESS.cpp -o sgtelib_src/Surrogate_LOWESS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Kriging.cpp -o sgtelib_src/Surrogate_Kriging.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_PRS_CAT.cpp -o sgtelib_src/Surrogate_PRS_CAT.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Ensemble.cpp -o sgtelib_src/Surrogate_Ensemble.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_CN.cpp -o sgtelib_src/Surrogate_CN.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate.cpp -o sgtelib_src/Surrogate.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Matrix.cpp -o sgtelib_src/Matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Kernel.cpp -o sgtelib_src/Kernel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Utils.cpp -o sgtelib_src/Surrogate_Utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Factory.cpp -o sgtelib_src/Surrogate_Factory.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Tests.cpp -o sgtelib_src/Tests.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/sgtelib_help.cpp -o sgtelib_src/sgtelib_help.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Metrics.cpp -o sgtelib_src/Metrics.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/sgtelib.cpp -o sgtelib_src/sgtelib.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o crs.so RuniqueCombs.o bspline.o gsl_bspline.o snomadr.o crs_init.o mgcv.o ./nomad_src/nomad.o ./nomad_src/Algo_Parameters.o ./nomad_src/Barrier.o ./nomad_src/Cache.o ./nomad_src/Cache_File_Point.o ./nomad_src/Cache_Point.o ./nomad_src/Cache_Search.o ./nomad_src/Clock.o ./nomad_src/Direction.o ./nomad_src/Directions.o ./nomad_src/Display.o ./nomad_src/Double.o ./nomad_src/Eval_Point.o ./nomad_src/Evaluator.o ./nomad_src/Evaluator_Control.o ./nomad_src/Extended_Poll.o ./nomad_src/L_Curve.o ./nomad_src/LH_Search.o ./nomad_src/Mads.o ./nomad_src/OrthogonalMesh.o ./nomad_src/Model_Sorted_Point.o ./nomad_src/Model_Stats.o ./nomad_src/Multi_Obj_Evaluator.o ./nomad_src/NelderMead_Search.o ./nomad_src/NelderMead_Simplex_Eval_Point.o ./nomad_src/Parameters.o ./nomad_src/Parameter_Entries.o ./nomad_src/Parameter_Entry.o ./nomad_src/Pareto_Front.o ./nomad_src/Pareto_Point.o ./nomad_src/Phase_One_Evaluator.o ./nomad_src/Phase_One_Search.o ./nomad_src/Point.o ./nomad_src/Priority_Eval_Point.o ./nomad_src/Quad_Model.o ./nomad_src/Quad_Model_Evaluator.o ./nomad_src/Quad_Model_Search.o ./nomad_src/Random_Pickup.o ./nomad_src/RNG.o ./nomad_src/Sgtelib_Model_Evaluator.o ./nomad_src/Sgtelib_Model_Search.o ./nomad_src/Sgtelib_Model_Manager.o ./nomad_src/Signature.o ./nomad_src/Slave.o ./nomad_src/Speculative_Search.o ./nomad_src/Stats.o ./nomad_src/SMesh.o ./nomad_src/TrendMatrix_Line_Search.o ./nomad_src/GMesh.o ./nomad_src/XMesh.o ./nomad_src/utils.o ./nomad_src/Variable_Group.o ./nomad_src/VNS_Search.o ./sgtelib_src/TrainingSet.o ./sgtelib_src/Surrogate_Parameters.o ./sgtelib_src/Surrogate_KS.o ./sgtelib_src/Surrogate_RBF.o ./sgtelib_src/Surrogate_PRS.o ./sgtelib_src/Surrogate_PRS_EDGE.o ./sgtelib_src/Surrogate_LOWESS.o ./sgtelib_src/Surrogate_Kriging.o ./sgtelib_src/Surrogate_PRS_CAT.o ./sgtelib_src/Surrogate_Ensemble.o ./sgtelib_src/Surrogate_CN.o ./sgtelib_src/Surrogate.o ./sgtelib_src/Matrix.o ./sgtelib_src/Kernel.o ./sgtelib_src/Surrogate_Utils.o ./sgtelib_src/Surrogate_Factory.o ./sgtelib_src/Tests.o ./sgtelib_src/sgtelib_help.o ./sgtelib_src/Metrics.o ./sgtelib_src/sgtelib.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2KsMtq/R.INSTALL29039626023823/crs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-crs/00new/crs/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crs) checking svglite_2.2.2.tar.gz ... checking actel_1.3.0.tar.gz ... checking archeoViz_1.4.1.tar.gz ... checking BioVenn_1.1.3.tar.gz ... checking camcorder_0.1.0.tar.gz ... checking cubeview_0.4.1.tar.gz ... checking Coxmos_1.1.5.tar.gz ... checking ggsem_0.2.4.tar.gz ... checking glossa_1.2.4.tar.gz ... checking guiplot_0.5.0.tar.gz ... checking InflectSSP_1.6.tar.gz ... checking kableExtra_1.4.0.tar.gz ... checking leafpop_0.1.0.tar.gz ... checking LLSR_0.0.3.1.tar.gz ... checking modelDown_1.1.tar.gz ... checking netSEM_0.6.2.tar.gz ... checking plumber2_0.1.0.tar.gz ... checking PvSTATEM_0.2.2.tar.gz ... checking SerolyzeR_1.3.1.tar.gz ... checking SGP_2.2-0.0.tar.gz ... checking shinyloadtest_1.2.0.tar.gz ... checking visvow_1.3.11.tar.gz ... checking WebGestaltR_0.4.6.tar.gz ... checking afcharts_0.4.1.tar.gz ... checking aion_1.6.0.tar.gz ... checking ananke_0.1.0.tar.gz ... checking animint2_2025.9.16.tar.gz ... checking ArchaeoPhases_2.1.0.tar.gz ... checking flextable_0.9.10.tar.gz ... checking gglyph_0.2.0.tar.gz ... checking knitr_1.50.tar.gz ... checking ggExtra_0.11.0.tar.gz ... checking autoslider.core_0.3.1.tar.gz ... checking gtExtras_0.6.1.tar.gz ... checking khroma_1.17.0.tar.gz ... checking kfre_0.0.2.tar.gz ... checking ggpattern_1.2.1.tar.gz ... checking ggrepel_0.9.6.tar.gz ... checking dimensio_0.14.1.tar.gz ... checking ggfields_0.0.7.tar.gz ... checking ggfixest_0.4.0.tar.gz ... checking text_1.7.0.tar.gz ... checking mapsf_1.0.0.tar.gz ... checking kairos_2.3.0.tar.gz ... checking pkgndep_1.99.3.tar.gz ... checking COMMA_1.1.1.tar.gz ... checking gganimate_1.0.11.tar.gz ... checking ggdist_3.3.3.tar.gz ... checking ggplot2_4.0.0.tar.gz ... checking opencpu_2.2.14.tar.gz ... checking tidybayes_3.0.7.tar.gz ... checking plotor_0.7.0.tar.gz ... checking plutor_0.1.0.tar.gz ... checking brokenstick_2.6.0.tar.gz ... checking ggsankeyfier_0.1.8.tar.gz ... checking deeptime_2.2.0.tar.gz ... checking systemfonts_1.3.1.tar.gz ... checking rsvg_2.7.0.tar.gz ... checking tern_0.9.9.tar.gz ... checking tinysnapshot_0.2.0.tar.gz ... checking thematic_0.1.8.tar.gz ... checking ggspark_0.0.2.tar.gz ... checking isopleuros_1.4.0.tar.gz ... checking plumber_1.3.0.tar.gz ... checking projections_0.6.1.tar.gz ... checking gridpattern_1.3.1.tar.gz ... checking tabula_3.3.2.tar.gz ... checking serocalculator_1.3.0.tar.gz ... checking legendry_0.2.4.tar.gz ... checking partialling.out_0.2.0.tar.gz ... checking gratia_0.11.1.tar.gz ... checking nexus_0.6.0.tar.gz ... checking SCpubr_3.0.0.tar.gz ... checking svgPanZoom_0.3.4.tar.gz ... checking parttree_0.1.1.tar.gz ... checking mlr_2.19.3.tar.gz ... checking marginaleffects_0.30.0.tar.gz ... checking tinyplot_0.5.0.tar.gz ... checking nmaplateplot_1.0.2.tar.gz ... checking viridis_0.6.5.tar.gz ... checking pkgdepends_0.9.0.tar.gz ... checking DRomics_2.6-2.tar.gz ... checking rcmdcheck_1.4.0.tar.gz ... checking slackr_3.3.1.tar.gz ... checking OrgHeatmap_0.1.2.tar.gz ... Depends: Package: svglite Depends: R (>= 4.1) Imports: base64enc, cli, lifecycle, rlang (>= 1.1.0), systemfonts (>= 1.3.0), textshaping (>= 0.3.0) LinkingTo: cpp11, systemfonts, textshaping Timings: user system elapsed svglite 50.405 5.319 57.852 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 5 79 Check results summary: svglite ... OK rdepends_actel ... OK rdepends_afcharts ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_aion ... OK rdepends_ananke ... OK rdepends_animint2 ... OK rdepends_ArchaeoPhases ... OK rdepends_archeoViz ... OK rdepends_autoslider.core ... OK rdepends_BioVenn ... OK rdepends_brokenstick ... OK rdepends_camcorder ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_COMMA ... OK rdepends_Coxmos ... OK rdepends_cubeview ... OK rdepends_deeptime ... OK rdepends_dimensio ... OK rdepends_DRomics ... OK rdepends_flextable ... OK rdepends_gganimate ... OK rdepends_ggdist ... OK rdepends_ggExtra ... NOTE * checking R code for possible problems ... [6s/6s] NOTE rdepends_ggfields ... OK rdepends_ggfixest ... OK rdepends_gglyph ... OK rdepends_ggpattern ... OK rdepends_ggplot2 ... OK rdepends_ggrepel ... OK rdepends_ggsankeyfier ... OK rdepends_ggsem ... OK rdepends_ggspark ... OK rdepends_glossa ... OK rdepends_gratia ... OK rdepends_gridpattern ... OK rdepends_gtExtras ... OK rdepends_guiplot ... OK rdepends_InflectSSP ... OK rdepends_isopleuros ... OK rdepends_kableExtra ... OK rdepends_kairos ... OK rdepends_kfre ... OK rdepends_khroma ... OK rdepends_knitr ... OK rdepends_leafpop ... OK rdepends_legendry ... OK rdepends_LLSR ... OK rdepends_mapsf ... OK rdepends_marginaleffects ... OK rdepends_mlr ... OK rdepends_modelDown ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_netSEM ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_nexus ... OK rdepends_nmaplateplot ... OK rdepends_opencpu ... OK rdepends_OrgHeatmap ... OK rdepends_partialling.out ... OK rdepends_parttree ... OK rdepends_pkgdepends ... OK rdepends_pkgndep ... OK rdepends_plotor ... OK rdepends_plumber ... OK rdepends_plumber2 ... OK rdepends_plutor ... OK rdepends_projections ... OK rdepends_PvSTATEM ... OK rdepends_rcmdcheck ... OK rdepends_rsvg ... OK rdepends_SCpubr ... OK rdepends_serocalculator ... OK rdepends_SerolyzeR ... OK rdepends_SGP ... OK rdepends_shinyloadtest ... OK rdepends_slackr ... OK rdepends_svgPanZoom ... OK rdepends_systemfonts ... OK rdepends_tabula ... OK rdepends_tern ... OK rdepends_text ... OK rdepends_thematic ... OK rdepends_tidybayes ... OK rdepends_tinyplot ... OK rdepends_tinysnapshot ... OK rdepends_viridis ... OK rdepends_visvow ... OK rdepends_WebGestaltR ... OK Check results changes: Package: actel Check: HTML version of manual Old result: NOTE New result: OK Package: ananke Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: animint2 Check: HTML version of manual Old result: NOTE New result: OK Package: autoslider.core Check: HTML version of manual Old result: NOTE New result: OK Package: BioVenn Check: CRAN incoming feasibility Old result: NOTE Package: brokenstick Check: HTML version of manual Old result: NOTE New result: OK Package: Coxmos Check: HTML version of manual Old result: NOTE New result: OK Package: cubeview Check: HTML version of manual Old result: NOTE New result: OK Package: dimensio Check: HTML version of manual Old result: NOTE New result: OK Package: flextable Check: HTML version of manual Old result: NOTE New result: OK Package: gganimate Check: HTML version of manual Old result: NOTE New result: OK Package: ggpattern Check: HTML version of manual Old result: NOTE New result: OK Package: ggplot2 Check: HTML version of manual Old result: NOTE New result: OK Package: gratia Check: HTML version of manual Old result: NOTE New result: OK Package: gtExtras Check: HTML version of manual Old result: NOTE New result: OK Package: isopleuros Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: kableExtra Check: HTML version of manual Old result: NOTE New result: OK Package: khroma Check: HTML version of manual Old result: NOTE New result: OK Package: knitr Check: DESCRIPTION meta-information Old result: NOTE New result: OK Package: knitr Check: HTML version of manual Old result: NOTE New result: OK Package: legendry Check: HTML version of manual Old result: NOTE New result: OK Package: LLSR Check: CRAN incoming feasibility Old result: NOTE Package: LLSR Check: HTML version of manual Old result: NOTE New result: OK Package: marginaleffects Check: HTML version of manual Old result: NOTE New result: OK Package: mlr Check: HTML version of manual Old result: NOTE New result: OK Package: pkgdepends Check: HTML version of manual Old result: NOTE New result: OK Package: plumber Check: HTML version of manual Old result: NOTE New result: OK Package: plumber2 Check: HTML version of manual Old result: NOTE New result: OK Package: PvSTATEM Check: HTML version of manual Old result: NOTE New result: OK Package: rcmdcheck Check: HTML version of manual Old result: NOTE New result: OK Package: SerolyzeR [Old version: 1.3.0, New version: 1.3.1] Check: HTML version of manual Old result: NOTE New result: OK Package: slackr Check: CRAN incoming feasibility Old result: NOTE Package: slackr Check: HTML version of manual Old result: NOTE New result: OK Package: svgPanZoom Check: HTML version of manual Old result: NOTE New result: OK Package: tabula Check: HTML version of manual Old result: NOTE New result: OK Package: tern Check: HTML version of manual Old result: NOTE New result: OK Package: text Check: HTML version of manual Old result: NOTE New result: OK Package: tinyplot Check: HTML version of manual Old result: NOTE New result: OK Package: visvow Check: HTML version of manual Old result: NOTE New result: OK