* installing *source* package ‘survival’ ...
** using staged installation
** libs
using C compiler: ‘Debian clang version 19.1.5 (1)’
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agexact.c -o agexact.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agfit4.c -o agfit4.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agfit5.c -o agfit5.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agmart.c -o agmart.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agmart3.c -o agmart3.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agscore2.c -o agscore2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agscore3.c -o agscore3.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agsurv4.c -o agsurv4.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c agsurv5.c -o agsurv5.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cdecomp.c -o cdecomp.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c chinv2.c -o chinv2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c chinv3.c -o chinv3.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cholesky2.c -o cholesky2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cholesky3.c -o cholesky3.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cholesky5.c -o cholesky5.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c chsolve2.c -o chsolve2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c chsolve3.c -o chsolve3.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c chsolve5.c -o chsolve5.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c collapse.c -o collapse.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c concordance1.c -o concordance1.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c concordance3.c -o concordance3.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c concordance5.c -o concordance5.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c cox_Rcallback.c -o cox_Rcallback.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxcount1.c -o coxcount1.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxdetail.c -o coxdetail.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxexact.c -o coxexact.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxfit5.c -o coxfit5.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxfit6.c -o coxfit6.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxmart.c -o coxmart.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxmart2.c -o coxmart2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxph_wtest.c -o coxph_wtest.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxsafe.c -o coxsafe.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxscho.c -o coxscho.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxscore2.c -o coxscore2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxsurv1.c -o coxsurv1.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxsurv2.c -o coxsurv2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxsurv3.c -o coxsurv3.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coxsurv4.c -o coxsurv4.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dmatrix.c -o dmatrix.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c doloop.c -o doloop.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fastkm.c -o fastkm.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c finegray.c -o finegray.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c gchol.c -o gchol.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c multicheck.c -o multicheck.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c norisk.c -o norisk.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c pyears1.c -o pyears1.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c pyears2.c -o pyears2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c pyears3b.c -o pyears3b.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c pystep.c -o pystep.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c residcsum.c -o residcsum.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survConcordance.c -o survConcordance.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survdiff2.c -o survdiff2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survfit4.c -o survfit4.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survfitaj.c -o survfitaj.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survfitkm.c -o survfitkm.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survfitresid.c -o survfitresid.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survpenal.c -o survpenal.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survreg6.c -o survreg6.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survreg7.c -o survreg7.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survregc1.c -o survregc1.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survregc2.c -o survregc2.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c survsplit.c -o survsplit.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c tmerge.c -o tmerge.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c twoclust.c -o twoclust.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c zph1.c -o zph1.o
clang-19  -I"/home/hornik/tmp/R-d-clang-19/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c zph2.c -o zph2.o
clang-19 -shared -L/home/hornik/tmp/R-d-clang-19/lib -Wl,-O1 -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart3.o agscore2.o agscore3.o agsurv4.o agsurv5.o cdecomp.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o collapse.o concordance1.o concordance3.o concordance5.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore2.o coxsurv1.o coxsurv2.o coxsurv3.o coxsurv4.o dmatrix.o doloop.o fastkm.o finegray.o gchol.o init.o multicheck.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o residcsum.o survConcordance.o survdiff2.o survfit4.o survfitaj.o survfitkm.o survfitresid.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o twoclust.o zph1.o zph2.o -L/home/hornik/tmp/R-d-clang-19/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/survival.Rcheck/00LOCK-survival/00new/survival/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (survival)