options(na.action=na.exclude) # preserve missings options(contrasts=c('contr.treatment', 'contr.poly')) #ensure constrast type library(survival) # # A test of NULL models # fit1 <- coxph(Surv(stop, event) ~ rx + strata(number), bladder, iter=0) fit2 <- coxph(Surv(stop, event) ~ strata(number), bladder) all.equal(fit1$loglik[2], fit2$loglik) all.equal(fit1$resid, fit2$resid) fit1 <- coxph(Surv(start, stop, event) ~ rx + strata(number), bladder2, iter=0) fit2 <- coxph(Surv(start, stop, event) ~ strata(number), bladder2) all.equal(fit1$loglik[2], fit2$loglik) all.equal(fit1$resid, fit2$resid)