R Under development (unstable) (2025-12-06 r89118 ucrt) -- "Unsuffered Consequences" Copyright (C) 2025 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(surveymixr) > > test_check("surveymixr") Convergence Diagnostics ======================= Number of random starts: 5 Best log-likelihood: -359.0618 Local maxima detected: 1 Top 5 solutions: rank loglik n_times diff_from_best 1 1 -359.0618 5 0 Warnings: - No convergence issues detected Recommendations: - Model appears well-identified Convergence Diagnostics ======================= Number of random starts: 5 Best log-likelihood: -359.0618 Local maxima detected: 1 Top 5 solutions: rank loglik n_times diff_from_best 1 1 -359.0618 5 0 Warnings: - No convergence issues detected Recommendations: - Model appears well-identified Growth Mixture Model Selection ============================== Models compared: 1, 2 Criteria used: BIC Recommended classes: 1 Comparison Table: n_classes loglik aic bic abic entropy smallest_class 1 -363.5008 733.0015 738.7376 729.3211 NaN 1 2 -363.4939 740.9877 754.3719 732.4000 0.007483237 1 n_params converged 3 TRUE 7 TRUE --- Access fitted models: object@fitted_models BLRT results: object@blrt_results Growth Mixture Model Selection ============================== Models compared: 1, 2 Criteria used: BIC Recommended classes: 1 Comparison Table: n_classes loglik aic bic abic entropy smallest_class 1 -363.5008 733.0015 738.7376 729.3211 NaN 1 2 -363.4939 740.9877 754.3719 732.4000 0.007483237 1 n_params converged 3 TRUE 7 TRUE --- Access fitted models: object@fitted_models BLRT results: object@blrt_results [ FAIL 0 | WARN 50 | SKIP 123 | PASS 571 ] ══ Skipped tests (123) ═════════════════════════════════════════════════════════ • Binary distal outcomes require special handling - implement in v0.3.0 (1): 'test-r3step.R:367:3' • Cross-sectional validation not yet implemented in gmm_survey() (1): 'test-edge-cases.R:379:3' • ML method not yet implemented (1): 'test-r3step.R:405:3' • ML method not yet implemented in r3step (1): 'test-r3step.R:50:3' • Mplus comparison requires Mplus installation - test manually (1): 'test-comprehensive.R:432:3' • Mplus conversion requires Mplus syntax parser - implement in future (1): 'test-utilities.R:118:3' • Mplus export requires template - implement in future (1): 'test-utilities.R:138:3' • On CRAN (102): 'test-basic-estimation.R:6:3', 'test-basic-estimation.R:63:3', 'test-basic-estimation.R:92:3', 'test-basic-estimation.R:127:3', 'test-categorical-outcomes.R:112:3', 'test-categorical-outcomes.R:143:3', 'test-categorical-outcomes.R:202:3', 'test-categorical-outcomes.R:277:3', 'test-comprehensive.R:22:3', 'test-comprehensive.R:53:3', 'test-comprehensive.R:126:3', 'test-comprehensive.R:193:3', 'test-comprehensive.R:261:3', 'test-comprehensive.R:329:3', 'test-comprehensive.R:471:3', 'test-comprehensive.R:553:3', 'test-comprehensive.R:664:3', 'test-comprehensive.R:730:3', 'test-comprehensive.R:815:3', 'test-comprehensive.R:888:3', 'test-convergence.R:9:3', 'test-convergence.R:35:3', 'test-convergence.R:158:3', 'test-convergence.R:188:3', 'test-convergence.R:222:3', 'test-convergence.R:262:3', 'test-convergence.R:306:3', 'test-convergence.R:339:3', 'test-convergence.R:378:3', 'test-convergence.R:409:3', 'test-convergence.R:442:3', 'test-convergence.R:483:3', 'test-convergence.R:517:3', 'test-convergence.R:544:3', 'test-convergence.R:573:3', 'test-convergence.R:601:3', 'test-diagnostics-advanced.R:33:3', 'test-diagnostics-advanced.R:60:3', 'test-diagnostics.R:13:3', 'test-diagnostics.R:43:3', 'test-edge-cases.R:5:3', 'test-edge-cases.R:34:3', 'test-edge-cases.R:61:3', 'test-edge-cases.R:94:3', 'test-edge-cases.R:129:3', 'test-edge-cases.R:160:3', 'test-edge-cases.R:191:3', 'test-edge-cases.R:221:3', 'test-edge-cases.R:262:3', 'test-edge-cases.R:290:3', 'test-edge-cases.R:347:3', 'test-edge-cases.R:428:3', 'test-edge-cases.R:459:3', 'test-edge-cases.R:492:3', 'test-edge-cases.R:528:3', 'test-growth-models.R:5:3', 'test-growth-models.R:51:3', 'test-growth-models.R:90:3', 'test-growth-models.R:149:3', 'test-missing-data.R:5:3', 'test-missing-data.R:37:3', 'test-missing-data.R:127:3', 'test-missing-data.R:163:3', 'test-missing-data.R:245:3', 'test-model-selection.R:180:3', 'test-model-selection.R:224:3', 'test-model-selection.R:251:3', 'test-model-selection.R:283:3', 'test-model-selection.R:316:3', 'test-model-selection.R:347:3', 'test-model-selection.R:405:3', 'test-model-selection.R:435:3', 'test-model-selection.R:467:3', 'test-model-selection.R:496:3', 'test-model-selection.R:526:3', 'test-model-selection.R:565:3', 'test-plotting-edge-cases.R:5:3', 'test-plotting-edge-cases.R:55:3', 'test-plotting-edge-cases.R:88:3', 'test-plotting-edge-cases.R:117:3', 'test-plotting-edge-cases.R:143:3', 'test-plotting-edge-cases.R:169:3', 'test-plotting-edge-cases.R:204:3', 'test-plotting-edge-cases.R:239:3', 'test-plotting-edge-cases.R:269:3', 'test-plotting-edge-cases.R:303:3', 'test-plotting-interactive.R:23:3', 'test-plotting-interactive.R:52:3', 'test-plotting-interactive.R:79:3', 'test-r3step.R:5:3', 'test-r3step.R:121:3', 'test-r3step.R:164:3', 'test-r3step.R:205:3', 'test-r3step.R:247:3', 'test-r3step.R:323:3', 'test-survey-designs.R:5:3', 'test-survey-designs.R:36:3', 'test-survey-designs.R:66:3', 'test-survey-designs.R:128:3', 'test-survey-designs.R:161:3', 'test-survey-designs.R:245:3', 'test-survey-designs.R:290:3' • Requires fitted models (2): 'test-lmr-cv.R:43:3', 'test-lmr-cv.R:56:3' • Requires fitted models - placeholder test (1): 'test-lmr-cv.R:22:3' • SurveyMixrRE class not yet fully implemented - pending v0.3.0 (1): 'test-random-effects.R:91:3' • SurveyMixrTVC class not yet fully implemented - pending v0.3.0 (1): 'test-time-varying-covariates.R:63:3' • check_missing_patterns() not yet implemented (1): 'test-missing-data.R:327:5' • compare_classes requires covariates in @data - functionality needs review (2): 'test-comprehensive.R:366:3', 'test-comprehensive.R:401:3' • empty test (3): 'test-diagnostics-advanced.R:85:1', 'test-lmr-cv.R:273:1', 'test-missing-data.R:275:1' • gmm_survey_tvc not yet implemented - pending v0.3.0 (1): 'test-time-varying-covariates.R:15:3' • nonlinear growth model not yet implemented (1): 'test-growth-models.R:120:3' • plot_class_comparison requires covariates in @data - functionality needs review (1): 'test-comprehensive.R:523:3' [ FAIL 0 | WARN 50 | SKIP 123 | PASS 571 ] > > proc.time() user system elapsed 289.04 1.20 290.26