* using log directory ‘/srv/hornik/tmp/CRAN/survey.Rcheck’ * using R Under development (unstable) (2024-03-07 r86063) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (5) Debian flang-new version 17.0.6 (5) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘survey/DESCRIPTION’ ... OK * this is package ‘survey’ version ‘4.4’ * checking CRAN incoming feasibility ... [5s/9s] NOTE Maintainer: ‘"Thomas Lumley" ’ Found the following (possibly) invalid URLs: URL: https://www.maths.qmul.ac.uk/~lsoicher/designtheory.org/library/encyc/ From: man/paley.Rd Status: Error Message: Failed to connect to www.maths.qmul.ac.uk port 443 after 175 ms: Couldn't connect to server * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘survey’ can be installed ... [23s/23s] OK * used C++ compiler: ‘Debian clang version 17.0.6 (5)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking whether startup messages can be suppressed ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [29s/29s] OK * checking Rd files ... [0s/0s] NOTE checkRd: (-1) svyquantile.Rd:58: Lost braces; missing escapes or markup? 58 | quantile interval; \code{"hf1"} to {"hf9"} are weighted analogues of | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [21s/21s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [59s/59s] OK Running ‘3stage2phase.R’ [1s/1s] Running ‘DBIcheck.R’ [1s/1s] Running ‘anova-svycoxph.R’ [1s/1s] Running ‘api.R’ [1s/1s] Running ‘badcal.R’ [1s/1s] Comparing ‘badcal.Rout’ to ‘badcal.Rout.save’ ... OK Running ‘brewer_cpp.R’ [1s/1s] Running ‘bycovmat.R’ [1s/1s] Running ‘caleg.R’ [2s/2s] Running ‘check.R’ [1s/1s] Comparing ‘check.Rout’ to ‘check.Rout.save’ ... OK Running ‘confintrep.R’ [1s/1s] Running ‘contrast-replicates.R’ [1s/1s] Running ‘coxph-termtest.R’ [1s/1s] Running ‘deff.R’ [1s/1s] Comparing ‘deff.Rout’ to ‘deff.Rout.save’ ... OK Running ‘defftest.R’ [1s/1s] Running ‘degf-svrepdesign.R’ [1s/1s] Running ‘domain.R’ [1s/1s] Comparing ‘domain.Rout’ to ‘domain.Rout.save’ ... OK Running ‘fpc.R’ [1s/1s] Running ‘glm-scoping.R’ [1s/1s] Running ‘kalton.R’ [1s/1s] Comparing ‘kalton.Rout’ to ‘kalton.Rout.save’ ... OK Running ‘logranktest.R’ [1s/1s] Running ‘lonely.psu.R’ [1s/1s] Comparing ‘lonely.psu.Rout’ to ‘lonely.psu.Rout.save’ ... OK Running ‘mtcars-var.R’ [1s/1s] Running ‘multistage-rcpp.R’ [1s/1s] Running ‘multistage.R’ [1s/1s] Running ‘na_action.R’ [1s/1s] Running ‘newquantile.R’ [1s/1s] Running ‘nwts-cch.R’ [2s/2s] Running ‘nwts.R’ [2s/2s] Comparing ‘nwts.Rout’ to ‘nwts.Rout.save’ ... OK Running ‘poisson.R’ [1s/1s] Running ‘pps.R’ [1s/1s] Running ‘qrule-swiss.R’ [1s/1s] Running ‘quantile.R’ [2s/2s] Comparing ‘quantile.Rout’ to ‘quantile.Rout.save’ ... OK Running ‘quantiles-chile.R’ [1s/1s] Running ‘rakecheck.R’ [1s/1s] Comparing ‘rakecheck.Rout’ to ‘rakecheck.Rout.save’ ... OK Running ‘raowuboot.R’ [1s/1s] Comparing ‘raowuboot.Rout’ to ‘raowuboot.Rout.save’ ... OK Running ‘regTermTest-missing.R’ [1s/1s] Running ‘regpredict.R’ [1s/1s] Comparing ‘regpredict.Rout’ to ‘regpredict.Rout.save’ ... OK Running ‘rss_scores.R’ [1s/1s] Running ‘scoping.R’ [1s/1s] Running ‘survcurve.R’ [3s/3s] Comparing ‘survcurve.Rout’ to ‘survcurve.Rout.save’ ... OK Running ‘svyby-strings.R’ [1s/1s] Running ‘svyby_bug.R’ [1s/1s] Running ‘svyby_se.R’ [1s/1s] Running ‘svycontrast.R’ [1s/1s] Running ‘svyivreg-var.R’ [1s/1s] Running ‘svyivreg.R’ [1s/1s] Running ‘svyolr-rake-subset.R’ [1s/1s] Running ‘svyolr.R’ [1s/1s] Running ‘toy_example_for_postStratify.R’ [1s/1s] Running ‘twophase.R’ [2s/2s] Comparing ‘twophase.Rout’ to ‘twophase.Rout.save’ ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [18s/17s] OK * checking PDF version of manual ... [6s/6s] OK * checking HTML version of manual ... [2s/3s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs