## moved from example(simulate.twinstim) data("imdepi", "imdepifit") load(system.file("shapes", "districtsD.RData", package="surveillance")) ## simulate 2 realizations over a short period (for speed), ## with modified coefficients, ## considering original events before t0=31 as prehistory expect_stdout( mysims <- simulate(imdepifit, nsim=2, seed=1, data=imdepi, tiles=districtsD, newcoef=c("e.typeC"=-1), t0=31, T=45, trace=TRUE, simplify=TRUE) , "Simulation has ended @t = 45" ) ## check construction and selection from "simEpidataCSlist" mysim_from_list <- mysims[[1]] invisible(capture.output( mysim_single <- eval(replace(attr(mysims, "call"), "nsim", 1)) )) mysim_from_list$runtime <- mysim_single$runtime <- NULL expect_equivalent(mysim_single, mysim_from_list) ## check equivalence of Lambdag from simulation and residuals via twinstim expect_equal( suppressMessages(surveillance:::residuals.twinstim(surveillance:::as.twinstim.simEpidataCS(mysims[[1]]))), residuals(mysims[[1]]) )