downloading reverse dependencies ... downloading AutoScore_1.0.0.tar.gz ... ok downloading biospear_1.0.2.tar.gz ... ok downloading plsRcox_1.7.7.tar.gz ... ok downloading mlr_2.19.2.tar.gz ... ok installing dependencies ‘adabag’, ‘brnn’, ‘bst’, ‘care’, ‘cmaes’, ‘coxed’, ‘crs’, ‘deepnet’, ‘evtree’, ‘FDboost’, ‘frbs’, ‘FSelector’, ‘FSelectorRcpp’, ‘grplasso’, ‘irace’, ‘laGP’, ‘mldr’, ‘mlrMBO’, ‘mRMRe’, ‘pamr’, ‘plsdof’, ‘plsRcox’, ‘plsRglm’, ‘praznik’, ‘rFerns’, ‘risksetROC’, ‘rotationForest’, ‘RRF’, ‘rucrdtw’, ‘sda’, ‘sparseLDA’, ‘stepPlr’, ‘survAUC’, ‘survcomp’ also installing the dependencies ‘PermAlgo’, ‘ConsRank’, ‘gamboostLSS’ begin installing package ‘PermAlgo’ begin installing package ‘ConsRank’ begin installing package ‘survAUC’ begin installing package ‘gamboostLSS’ begin installing package ‘plsRglm’ begin installing package ‘grplasso’ begin installing package ‘survcomp’ begin installing package ‘risksetROC’ begin installing package ‘plsdof’ begin installing package ‘brnn’ begin installing package ‘bst’ begin installing package ‘care’ begin installing package ‘cmaes’ begin installing package ‘crs’ begin installing package ‘deepnet’ begin installing package ‘evtree’ begin installing package ‘frbs’ begin installing package ‘FSelector’ begin installing package ‘FSelectorRcpp’ begin installing package ‘irace’ begin installing package ‘laGP’ begin installing package ‘mldr’ begin installing package ‘mlrMBO’ begin installing package ‘mRMRe’ begin installing package ‘pamr’ begin installing package ‘praznik’ begin installing package ‘rFerns’ begin installing package ‘rotationForest’ * installing *source* package ‘PermAlgo’ ... ** package ‘PermAlgo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PermAlgo) begin installing package ‘RRF’ * installing *source* package ‘rotationForest’ ... ** package ‘rotationForest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rotationForest) begin installing package ‘rucrdtw’ * installing *source* package ‘care’ ... ** package ‘care’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (care) begin installing package ‘sda’ * installing *source* package ‘cmaes’ ... ** package ‘cmaes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmaes) begin installing package ‘sparseLDA’ * installing *source* package ‘deepnet’ ... ** package ‘deepnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deepnet) begin installing package ‘stepPlr’ * installing *source* package ‘grplasso’ ... ** package ‘grplasso’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grplasso) begin installing package ‘coxed’ * installing *source* package ‘rFerns’ ... ** package ‘rFerns’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpnNA2Oh/R.INSTALL2678d565f7ee53/rFerns/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ferns.c -o ferns.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o rFerns.so ferns.o -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpnNA2Oh/R.INSTALL2678d565f7ee53/rFerns/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rFerns/00new/rFerns/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rFerns) * installing *source* package ‘plsdof’ ... ** package ‘plsdof’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (plsdof) * installing *source* package ‘brnn’ ... ** package ‘brnn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZyauqI/R.INSTALL2678ae2eaa0bb0/brnn/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Lanczos.c -o Lanczos.o Lanczos.c: In function ‘extreme_eigenvalues’: Lanczos.c:191:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 191 | for (xx=0.0,zp=z,p0=zp+*n;zp= 0){// new tree with "treeNumber2" is accepted | ^~ container.cpp:1130:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1130 | if(accept1 == 0) | ^~ container.cpp:1132:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1132 | if( accept1 >= 0){// new tree with "treeNumber1" is accepted | ^~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c node.cpp -o node.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree.cpp -o tree.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c variable.cpp -o variable.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o evtree.so container.o node.o tree.o variable.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDDAX0v/R.INSTALL2678be17cfede7/evtree/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-evtree/00new/evtree/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evtree) * installing *source* package ‘frbs’ ... ** package ‘frbs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frbs) * installing *source* package ‘mRMRe’ ... ** package ‘mRMRe’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpf4Lrtf/R.INSTALL2678ccbf4ff57/mRMRe/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Data.cpp -o Data.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Filter.cpp -o Filter.o Filter.cpp: In member function ‘const void Filter::placeElements(unsigned int, unsigned int, unsigned int)’: Filter.cpp:198:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 198 | for (int j = 0; j < mFixedFeatureCount; ++j) | ~~^~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Math.cpp -o Math.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Matrix.cpp -o Matrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c MutualInformationMatrix.cpp -o MutualInformationMatrix.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exports.cpp -o exports.o exports.cpp: In function ‘SEXPREC* export_concordance_index(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:55:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 55 | for (unsigned int i = 0; i < INTEGER(sampleStratumCount)[0]; ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:80:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 80 | for (unsigned int i = 0; i < LENGTH(childrenCountPerLevel); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:92:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 92 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:105:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 105 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:153:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 153 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:159:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 159 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:168:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 168 | for (unsigned int j = 0; j < LENGTH(targetFeatureIndices); ++j) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o mRMRe.so Data.o Filter.o Math.o Matrix.o MutualInformationMatrix.o exports.o -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpf4Lrtf/R.INSTALL2678ccbf4ff57/mRMRe/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mRMRe/00new/mRMRe/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mRMRe) * installing *source* package ‘laGP’ ... ** package ‘laGP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgqqoKd/R.INSTALL2678c8216ca69d/laGP/src' /home/hornik/tmp/R-d-gcc-14/bin/R CMD SHLIB -o laGP.so *.c using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmpgqqoKd/R.INSTALL2678c8216ca69d/laGP/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar.c -o covar.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar_sep.c -o covar_sep.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c davies.c -o davies.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gamma.c -o gamma.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gp.c -o gp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gp_sep.c -o gp_sep.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ieci.c -o ieci.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c laGP.c -o laGP.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c laGP_sep.c -o laGP_sep.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linalg.c -o linalg.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c order.c -o order.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rbetter.c -o rbetter.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rhelp.c -o rhelp.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o laGP.so covar.o covar_sep.o davies.o gamma.o gp.o gp_sep.o ieci.o init.o laGP.o laGP_sep.o linalg.o matrix.o order.o rbetter.o rhelp.o util.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmpgqqoKd/R.INSTALL2678c8216ca69d/laGP/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgqqoKd/R.INSTALL2678c8216ca69d/laGP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-laGP/00new/laGP/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (laGP) * installing *source* package ‘survAUC’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOs7BXY/R.INSTALL26787e1e06c27e/survAUC/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_survAUC.c -o R_init_survAUC.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_Cham_Diao.c -o survAUC_Cham_Diao.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_HZ.c -o survAUC_HZ.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_Hung_Chiang.c -o survAUC_Hung_Chiang.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_SongZhou.c -o survAUC_SongZhou.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_UNO.c -o survAUC_UNO.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surv_measures.c -o surv_measures.o gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o survAUC.so R_init_survAUC.o survAUC_Cham_Diao.o survAUC_HZ.o survAUC_Hung_Chiang.o survAUC_SongZhou.o survAUC_UNO.o surv_measures.o utils.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOs7BXY/R.INSTALL26787e1e06c27e/survAUC/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-survAUC/00new/survAUC/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survAUC) * installing *source* package ‘survcomp’ ... ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-3) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEueIma/R.INSTALL26788b407de177/survcomp/src' gcc-14 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c concordance.index.c -o concordance.index.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c foo_mrmr_ensemble_surv.cpp -o foo_mrmr_ensemble_surv.o foo_mrmr_ensemble_surv.cpp: In function ‘double get_correlation_ensemble(double*, int*, int, int, int)’: foo_mrmr_ensemble_surv.cpp:12:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 12 | for( unsigned int i=0; i< size; ++i ) { | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:22:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 22 | for( unsigned int i=0; i< size; ++i ) { | ~^~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘double returnConcordanceIndexC(int*, int*, double*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:40:16: warning: ISO C++ forbids variable length array ‘res_ch’ [-Wvla] 40 | double res_ch[lenStrat]; | ^~~~~~ foo_mrmr_ensemble_surv.cpp:41:16: warning: ISO C++ forbids variable length array ‘res_dh’ [-Wvla] 41 | double res_dh[lenStrat]; | ^~~~~~ foo_mrmr_ensemble_surv.cpp:48:21: warning: ISO C++ forbids variable length array ‘ixs’ [-Wvla] 48 | int ixs[lenStrat]; | ^~~ foo_mrmr_ensemble_surv.cpp:64:24: warning: ISO C++ forbids variable length array ‘xs’ [-Wvla] 64 | double xs[Ns]; | ^~ foo_mrmr_ensemble_surv.cpp:72:21: warning: ISO C++ forbids variable length array ‘cls’ [-Wvla] 72 | int cls[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:80:24: warning: ISO C++ forbids variable length array ‘sts’ [-Wvla] 80 | double sts[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:88:21: warning: ISO C++ forbids variable length array ‘ses’ [-Wvla] 88 | int ses[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:96:24: warning: ISO C++ forbids variable length array ‘weightss’ [-Wvla] 96 | double weightss[Ns]; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:104:24: warning: ISO C++ forbids variable length array ‘chs’ [-Wvla] 104 | double chs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:105:24: warning: ISO C++ forbids variable length array ‘dhs’ [-Wvla] 105 | double dhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:106:24: warning: ISO C++ forbids variable length array ‘uhs’ [-Wvla] 106 | double uhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:107:24: warning: ISO C++ forbids variable length array ‘rphs’ [-Wvla] 107 | double rphs[Ns]; | ^~~~ foo_mrmr_ensemble_surv.cpp:106:24: warning: variable ‘uhs’ set but not used [-Wunused-but-set-variable] 106 | double uhs[Ns]; | ^~~ foo_mrmr_ensemble_surv.cpp:107:24: warning: variable ‘rphs’ set but not used [-Wunused-but-set-variable] 107 | double rphs[Ns]; | ^~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void build_mim_cIndex_subset(double*, double*, int*, int, int, int*, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int*)’: foo_mrmr_ensemble_surv.cpp:202:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 202 | for(unsigned int i=0; i< size_subset; ++i){ | ~^~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:203:40: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 203 | for(unsigned int j=0; j< (nvar-1); ++j){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:214:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 214 | for(unsigned int i=0; i< nvar-1; ++i){ | ~^~~~~~~~ foo_mrmr_ensemble_surv.cpp:216:42: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 216 | for(unsigned int j=i+1; j< nvar-1; ++j){ | ~^~~~~~~~ foo_mrmr_ensemble_surv.cpp:191:24: warning: unused variable ‘msurv_x’ [-Wunused-variable] 191 | int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:191:34: warning: unused variable ‘ustrat_x’ [-Wunused-variable] 191 | int *namat_x, *msurv_x, *ustrat_x, *cl2_x, *se_x, *strat_x; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_tree(tree&, tree&, double*, int*, int, int, int, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:351:21: warning: unused variable ‘cnt_back’ [-Wunused-variable] 351 | int cnt_back=cnt2; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:286:14: warning: unused variable ‘nsub’ [-Wunused-variable] 286 | int nsub, *prev_sel,nsamples_boot=nsamples,*to_remove; | ^~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:393:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 393 | for(unsigned int k=0; k< rep_boot; ++k){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:396:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 396 | for(unsigned int i=1;i<= size_boot;++i){ | ~^~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:400:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | for( unsigned int i=0; i< size ; ++i ){ | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:401:49: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 401 | for( unsigned int j=0; j< size ; ++j ){ | ~^~~~~~ foo_mrmr_ensemble_surv.cpp:412:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 412 | for(unsigned int i=0;i< rep_boot;++i){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:419:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 419 | for(unsigned int i=0;i< rep_boot;++i){ | ~^~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:387:17: warning: unused variable ‘mim’ [-Wunused-variable] 387 | double *mim, *boot_val, *mat_info; | ^~~ foo_mrmr_ensemble_surv.cpp: In function ‘double mrnet_onegene(double*, int, int, int*, int, int)’: foo_mrmr_ensemble_surv.cpp:448:39: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 448 | for(unsigned int j=0;j< nbvar; j++){ | ~^~~~~~~ foo_mrmr_ensemble_surv.cpp:437:22: warning: variable ‘jmax’ set but not used [-Wunused-but-set-variable] 437 | unsigned int jmax; | ^~~~ foo_mrmr_ensemble_surv.cpp:439:16: warning: unused variable ‘max_val’ [-Wunused-variable] 439 | double max_val=-1000; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘int verify_equivalentset_nparents(tree&, tree::pre_order_iterator, tree::pre_order_iterator, tree&, int)’: foo_mrmr_ensemble_surv.cpp:473:13: warning: ISO C++ forbids variable length array ‘vec_old’ [-Wvla] 473 | int vec_old[depth+1]; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:474:13: warning: ISO C++ forbids variable length array ‘mat_res’ [-Wvla] 474 | int mat_res [power((maxnsol+1),(depth))][depth+2]; | ^~~~~~~ foo_mrmr_ensemble_surv.cpp:474:13: warning: ISO C++ forbids variable length array ‘mat_res’ [-Wvla] foo_mrmr_ensemble_surv.cpp:476:13: warning: ISO C++ forbids variable length array ‘to_remove’ [-Wvla] 476 | int to_remove[number_leafs]; | ^~~~~~~~~ foo_mrmr_ensemble_surv.cpp:467:14: warning: unused variable ‘found’ [-Wunused-variable] 467 | bool found=false; | ^~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘void mrmr_ensemble_one_gene_remove(tree&, tree::pre_order_iterator, double*, int*, int, int, int, int, int, int, double, int*, int*, int*, double*, int*, double*, int*, int*, int*, int, int*)’: foo_mrmr_ensemble_surv.cpp:593:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 593 | for(unsigned int i=1;i<= nsamples;++i){ | ~^~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:596:33: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 596 | for( unsigned int i=0; i< n; ++i ){ | ~^~~ foo_mrmr_ensemble_surv.cpp:597:41: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 597 | for( unsigned int j=0; j< n; ++j ){ | ~^~~ foo_mrmr_ensemble_surv.cpp:604:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 604 | for(unsigned int k=0;k< max_elements ;++k){ | ~^~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:646:48: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 646 | for (unsigned int i=0;i<=max_depth;++i){ | ~^~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:654:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 654 | for(unsigned int k=0;k< n;++k){ | ~^~~ foo_mrmr_ensemble_surv.cpp:657:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 657 | for(unsigned int k=0;k<=max(res_tmp_new.depth(it_local),max_depth) ;++k){ | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:661:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 661 | for(unsigned int k=0;k< n;++k){ | ~^~~ foo_mrmr_ensemble_surv.cpp:578:31: warning: unused variable ‘nsamples_boot’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:578:55: warning: unused variable ‘tmp_val_max_ind’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:578:73: warning: unused variable ‘prev_sel_tmp’ [-Wunused-variable] 578 | int *nsub, *prev_sel,nsamples_boot=nsamples, tmp_val_max_ind, *prev_sel_tmp,*vec_sol_local,ndelete; | ^~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp:579:28: warning: unused variable ‘vec_sort’ [-Wunused-variable] 579 | double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr; | ^~~~~~~~ foo_mrmr_ensemble_surv.cpp:579:70: warning: variable ‘vec_local_max_sd’ set but not used [-Wunused-but-set-variable] 579 | double *vec_mean, *vec_sort, *vec_sd, *vec_local_max_mean, *vec_local_max_sd,tmp_val_max, *mrmr_vec_sort,*vec_sol_local_mrmr; | ^~~~~~~~~~~~~~~~ foo_mrmr_ensemble_surv.cpp: In function ‘SEXPREC* mrmr_cIndex_ensemble_remove(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: foo_mrmr_ensemble_surv.cpp:786:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘const int’ [-Wsign-compare] 786 | for(unsigned int i=0;i< *npredn;++i){ | ~^~~~~~~~~ foo_mrmr_ensemble_surv.cpp:820:47: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 820 | for(unsigned int k=0;k