R Under development (unstable) (2025-12-19 r89206 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(supportR)
> 
> test_check("supportR")
Following element(s) found in old object but not new: 
[1] "b" "x"
Following element(s) found in new object but not old: 
[1] "y" "z"
Following element(s) found in old object but not new: 
[1] "b" "x"
Following element(s) found in new object but not old: 
[1] "y" "z"
[1] "x" "b"
Following element(s) found in new object but not old: 
[1] "y" "z"
Following element(s) found in old object but not new: 
[1] "x" "b"
Following element(s) found in new object but not old: 
[1] "y" "z"
'data.frame':	24 obs. of  45 variables:
 $ treatment: chr  "Trt1" "Trt1" "Trt1" "Trt1" ...
 $ Callvulg : num  0.55 0.67 0.1 0 0 ...
 $ Empenigr : num  11.13 0.17 1.55 15.13 12.68 ...
 $ Rhodtome : num  0 0 0 2.42 0 0 1.55 0 0.35 0.07 ...
 $ Vaccmyrt : num  0 0.35 0 5.92 0 ...
 $ Vaccviti : num  17.8 12.1 13.5 16 23.7 ...
 $ Pinusylv : num  0.07 0.12 0.25 0 0.03 0.12 0.1 0.1 0.05 0.12 ...
 $ Descflex : num  0 0 0 3.7 0 0.02 0.78 0 0.4 0 ...
 $ Betupube : num  0 0 0 0 0 0 0.02 0 0 0 ...
 $ Vacculig : num  1.6 0 0 1.12 0 0 2 0 0.2 0 ...
 $ Diphcomp : num  2.07 0 0 0 0 0 0 0 0 0.07 ...
 $ Dicrsp   : num  0 0.33 23.43 0 0 ...
 $ Dicrfusc : num  1.62 10.92 0 3.63 3.42 ...
 $ Dicrpoly : num  0 0.02 1.68 0 0.02 0.02 0 0.23 0.2 0 ...
 $ Hylosple : num  0 0 0 6.7 0 0 0 0 9.97 0 ...
 $ Pleuschr : num  4.67 37.75 32.92 58.07 19.42 ...
 $ Polypili : num  0.02 0.02 0 0 0.02 0.02 0 0 0 0 ...
 $ Polyjuni : num  0.13 0.23 0.23 0 2.12 1.58 0 0.02 0.08 0.02 ...
 $ Polycomm : num  0 0 0 0.13 0 0.18 0 0 0 0 ...
 $ Pohlnuta : num  0.13 0.03 0.32 0.02 0.17 0.07 0.1 0.13 0.07 0.03 ...
 $ Ptilcili : num  0.12 0.02 0.03 0.08 1.8 0.27 0.03 0.1 0.03 0.25 ...
 $ Barbhatc : num  0 0 0 0.08 0.02 0.02 0 0 0 0.07 ...
 $ Cladarbu : num  21.73 12.05 3.58 1.42 9.08 ...
 $ Cladrang : num  21.47 8.13 5.52 7.63 9.22 ...
 $ Cladstel : num  3.5 0.18 0.07 2.55 0.05 ...
 $ Cladunci : num  0.3 2.65 8.93 0.15 0.73 0.25 2.38 0.82 0.05 0.95 ...
 $ Cladcocc : num  0.18 0.13 0 0 0.08 0.1 0.17 0.15 0.02 0.17 ...
 $ Cladcorn : num  0.23 0.18 0.2 0.38 1.42 0.25 0.13 0.05 0.03 0.05 ...
 $ Cladgrac : num  0.25 0.23 0.48 0.12 0.5 0.18 0.18 0.22 0.07 0.23 ...
 $ Cladfimb : num  0.25 0.25 0 0.1 0.17 0.1 0.2 0.22 0.1 0.18 ...
 $ Cladcris : num  0.23 1.23 0.07 0.03 1.78 0.12 0.2 0.17 0.02 0.57 ...
 $ Cladchlo : num  0 0 0.1 0 0.05 0.05 0.02 0 0 0.02 ...
 $ Cladbotr : num  0 0 0.02 0.02 0.05 0.02 0 0 0.02 0.07 ...
 $ Cladamau : num  0.08 0 0 0 0 0 0 0 0 0 ...
 $ Cladsp   : num  0.02 0 0 0.02 0 0 0.02 0.02 0 0.07 ...
 $ Cetreric : num  0.02 0.15 0.78 0 0 0 0.02 0.18 0 0.18 ...
 $ Cetrisla : num  0 0.03 0.12 0 0 0 0 0.08 0.02 0.02 ...
 $ Flavniva : num  0.12 0 0 0 0.02 0.02 0 0 0 0 ...
 $ Nepharct : num  0.02 0 0 0 0 0 0 0 0 0 ...
 $ Stersp   : num  0.62 0.85 0.03 0 1.58 0.28 0 0.03 0.02 0.03 ...
 $ Peltapht : num  0.02 0 0 0.07 0.33 0 0 0 0 0.02 ...
 $ Icmaeric : num  0 0 0 0 0 0 0 0.07 0 0 ...
 $ Cladcerv : num  0 0 0 0 0 0 0 0 0 0 ...
 $ Claddefo : num  0.25 1 0.33 0.15 1.97 0.37 0.15 0.67 0.08 0.47 ...
 $ Cladphyl : num  0 0 0 0 0 0 0 0 0 0 ...
Run 0 stress 0.1000211 
Run 1 stress 0.1000211 
... New best solution
... Procrustes: rmse 2.92461e-07  max resid 1.148807e-06 
... Similar to previous best
Run 2 stress 0.1000211 
... New best solution
... Procrustes: rmse 8.461249e-07  max resid 3.651833e-06 
... Similar to previous best
Run 3 stress 0.1532704 
Run 4 stress 0.1715395 
Run 5 stress 0.1532704 
Run 6 stress 0.1000211 
... Procrustes: rmse 5.650174e-07  max resid 1.656156e-06 
... Similar to previous best
Run 7 stress 0.1613443 
Run 8 stress 0.1926906 
Run 9 stress 0.1000211 
... Procrustes: rmse 1.492294e-05  max resid 6.462671e-05 
... Similar to previous best
Run 10 stress 0.1532704 
Run 11 stress 0.1000211 
... New best solution
... Procrustes: rmse 1.17616e-05  max resid 5.10465e-05 
... Similar to previous best
Run 12 stress 0.1613105 
Run 13 stress 0.1000211 
... New best solution
... Procrustes: rmse 3.005621e-06  max resid 1.295001e-05 
... Similar to previous best
Run 14 stress 0.1000211 
... New best solution
... Procrustes: rmse 2.412936e-06  max resid 1.01942e-05 
... Similar to previous best
Run 15 stress 0.1000211 
... Procrustes: rmse 2.424816e-06  max resid 1.030874e-05 
... Similar to previous best
Run 16 stress 0.1926906 
Run 17 stress 0.1000211 
... Procrustes: rmse 6.653879e-06  max resid 2.888708e-05 
... Similar to previous best
Run 18 stress 0.1715395 
Run 19 stress 0.2106241 
Run 20 stress 0.3840974 
*** Best solution repeated 3 times
'data.frame':	24 obs. of  45 variables:
 $ treatment: chr  "Trt1" "Trt1" "Trt1" "Trt1" ...
 $ Callvulg : num  0.55 0.67 0.1 0 0 ...
 $ Empenigr : num  11.13 0.17 1.55 15.13 12.68 ...
 $ Rhodtome : num  0 0 0 2.42 0 0 1.55 0 0.35 0.07 ...
 $ Vaccmyrt : num  0 0.35 0 5.92 0 ...
 $ Vaccviti : num  17.8 12.1 13.5 16 23.7 ...
 $ Pinusylv : num  0.07 0.12 0.25 0 0.03 0.12 0.1 0.1 0.05 0.12 ...
 $ Descflex : num  0 0 0 3.7 0 0.02 0.78 0 0.4 0 ...
 $ Betupube : num  0 0 0 0 0 0 0.02 0 0 0 ...
 $ Vacculig : num  1.6 0 0 1.12 0 0 2 0 0.2 0 ...
 $ Diphcomp : num  2.07 0 0 0 0 0 0 0 0 0.07 ...
 $ Dicrsp   : num  0 0.33 23.43 0 0 ...
 $ Dicrfusc : num  1.62 10.92 0 3.63 3.42 ...
 $ Dicrpoly : num  0 0.02 1.68 0 0.02 0.02 0 0.23 0.2 0 ...
 $ Hylosple : num  0 0 0 6.7 0 0 0 0 9.97 0 ...
 $ Pleuschr : num  4.67 37.75 32.92 58.07 19.42 ...
 $ Polypili : num  0.02 0.02 0 0 0.02 0.02 0 0 0 0 ...
 $ Polyjuni : num  0.13 0.23 0.23 0 2.12 1.58 0 0.02 0.08 0.02 ...
 $ Polycomm : num  0 0 0 0.13 0 0.18 0 0 0 0 ...
 $ Pohlnuta : num  0.13 0.03 0.32 0.02 0.17 0.07 0.1 0.13 0.07 0.03 ...
 $ Ptilcili : num  0.12 0.02 0.03 0.08 1.8 0.27 0.03 0.1 0.03 0.25 ...
 $ Barbhatc : num  0 0 0 0.08 0.02 0.02 0 0 0 0.07 ...
 $ Cladarbu : num  21.73 12.05 3.58 1.42 9.08 ...
 $ Cladrang : num  21.47 8.13 5.52 7.63 9.22 ...
 $ Cladstel : num  3.5 0.18 0.07 2.55 0.05 ...
 $ Cladunci : num  0.3 2.65 8.93 0.15 0.73 0.25 2.38 0.82 0.05 0.95 ...
 $ Cladcocc : num  0.18 0.13 0 0 0.08 0.1 0.17 0.15 0.02 0.17 ...
 $ Cladcorn : num  0.23 0.18 0.2 0.38 1.42 0.25 0.13 0.05 0.03 0.05 ...
 $ Cladgrac : num  0.25 0.23 0.48 0.12 0.5 0.18 0.18 0.22 0.07 0.23 ...
 $ Cladfimb : num  0.25 0.25 0 0.1 0.17 0.1 0.2 0.22 0.1 0.18 ...
 $ Cladcris : num  0.23 1.23 0.07 0.03 1.78 0.12 0.2 0.17 0.02 0.57 ...
 $ Cladchlo : num  0 0 0.1 0 0.05 0.05 0.02 0 0 0.02 ...
 $ Cladbotr : num  0 0 0.02 0.02 0.05 0.02 0 0 0.02 0.07 ...
 $ Cladamau : num  0.08 0 0 0 0 0 0 0 0 0 ...
 $ Cladsp   : num  0.02 0 0 0.02 0 0 0.02 0.02 0 0.07 ...
 $ Cetreric : num  0.02 0.15 0.78 0 0 0 0.02 0.18 0 0.18 ...
 $ Cetrisla : num  0 0.03 0.12 0 0 0 0 0.08 0.02 0.02 ...
 $ Flavniva : num  0.12 0 0 0 0.02 0.02 0 0 0 0 ...
 $ Nepharct : num  0.02 0 0 0 0 0 0 0 0 0 ...
 $ Stersp   : num  0.62 0.85 0.03 0 1.58 0.28 0 0.03 0.02 0.03 ...
 $ Peltapht : num  0.02 0 0 0.07 0.33 0 0 0 0 0.02 ...
 $ Icmaeric : num  0 0 0 0 0 0 0 0.07 0 0 ...
 $ Cladcerv : num  0 0 0 0 0 0 0 0 0 0 ...
 $ Claddefo : num  0.25 1 0.33 0.15 1.97 0.37 0.15 0.67 0.08 0.47 ...
 $ Cladphyl : num  0 0 0 0 0 0 0 0 0 0 ...
Run 0 stress 0.1000211 
Run 1 stress 0.1000211 
... Procrustes: rmse 3.906598e-06  max resid 1.522297e-05 
... Similar to previous best
Run 2 stress 0.1000211 
... Procrustes: rmse 6.038972e-06  max resid 2.131673e-05 
... Similar to previous best
Run 3 stress 0.2193691 
Run 4 stress 0.1000211 
... New best solution
... Procrustes: rmse 8.985957e-06  max resid 3.889657e-05 
... Similar to previous best
Run 5 stress 0.2207736 
Run 6 stress 0.1000211 
... Procrustes: rmse 2.790784e-06  max resid 1.191026e-05 
... Similar to previous best
Run 7 stress 0.1607503 
Run 8 stress 0.1000211 
... Procrustes: rmse 9.208875e-06  max resid 3.927627e-05 
... Similar to previous best
Run 9 stress 0.1000211 
... Procrustes: rmse 9.922831e-06  max resid 4.308021e-05 
... Similar to previous best
Run 10 stress 0.1616352 
Run 11 stress 0.1000211 
... Procrustes: rmse 6.440244e-06  max resid 2.78905e-05 
... Similar to previous best
Run 12 stress 0.1000211 
... Procrustes: rmse 5.205872e-06  max resid 2.253973e-05 
... Similar to previous best
Run 13 stress 0.1000211 
... Procrustes: rmse 1.023106e-05  max resid 4.437755e-05 
... Similar to previous best
Run 14 stress 0.1000211 
... Procrustes: rmse 7.203911e-06  max resid 2.198388e-05 
... Similar to previous best
Run 15 stress 0.1000211 
... Procrustes: rmse 1.112833e-05  max resid 4.73455e-05 
... Similar to previous best
Run 16 stress 0.1000211 
... Procrustes: rmse 7.918888e-06  max resid 3.421544e-05 
... Similar to previous best
Run 17 stress 0.1532705 
Run 18 stress 0.1000211 
... New best solution
... Procrustes: rmse 2.752078e-06  max resid 1.00247e-05 
... Similar to previous best
Run 19 stress 0.1000211 
... Procrustes: rmse 1.558199e-06  max resid 5.087487e-06 
... Similar to previous best
Run 20 stress 0.1000211 
... Procrustes: rmse 5.606327e-06  max resid 2.266353e-05 
... Similar to previous best
*** Best solution repeated 3 times
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 46 ]
> 
> proc.time()
   user  system elapsed 
   2.14    0.29    2.42