R Under development (unstable) (2025-06-02 r88257 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(supportR)
> 
> test_check("supportR")
Following element(s) found in old object but not new: 
[1] "b" "x"
Following element(s) found in new object but not old: 
[1] "y" "z"
Following element(s) found in old object but not new: 
[1] "b" "x"
Following element(s) found in new object but not old: 
[1] "y" "z"
[1] "x" "b"
Following element(s) found in new object but not old: 
[1] "y" "z"
Following element(s) found in old object but not new: 
[1] "x" "b"
Following element(s) found in new object but not old: 
[1] "y" "z"
'data.frame':	24 obs. of  45 variables:
 $ treatment: chr  "Trt1" "Trt1" "Trt1" "Trt1" ...
 $ Callvulg : num  0.55 0.67 0.1 0 0 ...
 $ Empenigr : num  11.13 0.17 1.55 15.13 12.68 ...
 $ Rhodtome : num  0 0 0 2.42 0 0 1.55 0 0.35 0.07 ...
 $ Vaccmyrt : num  0 0.35 0 5.92 0 ...
 $ Vaccviti : num  17.8 12.1 13.5 16 23.7 ...
 $ Pinusylv : num  0.07 0.12 0.25 0 0.03 0.12 0.1 0.1 0.05 0.12 ...
 $ Descflex : num  0 0 0 3.7 0 0.02 0.78 0 0.4 0 ...
 $ Betupube : num  0 0 0 0 0 0 0.02 0 0 0 ...
 $ Vacculig : num  1.6 0 0 1.12 0 0 2 0 0.2 0 ...
 $ Diphcomp : num  2.07 0 0 0 0 0 0 0 0 0.07 ...
 $ Dicrsp   : num  0 0.33 23.43 0 0 ...
 $ Dicrfusc : num  1.62 10.92 0 3.63 3.42 ...
 $ Dicrpoly : num  0 0.02 1.68 0 0.02 0.02 0 0.23 0.2 0 ...
 $ Hylosple : num  0 0 0 6.7 0 0 0 0 9.97 0 ...
 $ Pleuschr : num  4.67 37.75 32.92 58.07 19.42 ...
 $ Polypili : num  0.02 0.02 0 0 0.02 0.02 0 0 0 0 ...
 $ Polyjuni : num  0.13 0.23 0.23 0 2.12 1.58 0 0.02 0.08 0.02 ...
 $ Polycomm : num  0 0 0 0.13 0 0.18 0 0 0 0 ...
 $ Pohlnuta : num  0.13 0.03 0.32 0.02 0.17 0.07 0.1 0.13 0.07 0.03 ...
 $ Ptilcili : num  0.12 0.02 0.03 0.08 1.8 0.27 0.03 0.1 0.03 0.25 ...
 $ Barbhatc : num  0 0 0 0.08 0.02 0.02 0 0 0 0.07 ...
 $ Cladarbu : num  21.73 12.05 3.58 1.42 9.08 ...
 $ Cladrang : num  21.47 8.13 5.52 7.63 9.22 ...
 $ Cladstel : num  3.5 0.18 0.07 2.55 0.05 ...
 $ Cladunci : num  0.3 2.65 8.93 0.15 0.73 0.25 2.38 0.82 0.05 0.95 ...
 $ Cladcocc : num  0.18 0.13 0 0 0.08 0.1 0.17 0.15 0.02 0.17 ...
 $ Cladcorn : num  0.23 0.18 0.2 0.38 1.42 0.25 0.13 0.05 0.03 0.05 ...
 $ Cladgrac : num  0.25 0.23 0.48 0.12 0.5 0.18 0.18 0.22 0.07 0.23 ...
 $ Cladfimb : num  0.25 0.25 0 0.1 0.17 0.1 0.2 0.22 0.1 0.18 ...
 $ Cladcris : num  0.23 1.23 0.07 0.03 1.78 0.12 0.2 0.17 0.02 0.57 ...
 $ Cladchlo : num  0 0 0.1 0 0.05 0.05 0.02 0 0 0.02 ...
 $ Cladbotr : num  0 0 0.02 0.02 0.05 0.02 0 0 0.02 0.07 ...
 $ Cladamau : num  0.08 0 0 0 0 0 0 0 0 0 ...
 $ Cladsp   : num  0.02 0 0 0.02 0 0 0.02 0.02 0 0.07 ...
 $ Cetreric : num  0.02 0.15 0.78 0 0 0 0.02 0.18 0 0.18 ...
 $ Cetrisla : num  0 0.03 0.12 0 0 0 0 0.08 0.02 0.02 ...
 $ Flavniva : num  0.12 0 0 0 0.02 0.02 0 0 0 0 ...
 $ Nepharct : num  0.02 0 0 0 0 0 0 0 0 0 ...
 $ Stersp   : num  0.62 0.85 0.03 0 1.58 0.28 0 0.03 0.02 0.03 ...
 $ Peltapht : num  0.02 0 0 0.07 0.33 0 0 0 0 0.02 ...
 $ Icmaeric : num  0 0 0 0 0 0 0 0.07 0 0 ...
 $ Cladcerv : num  0 0 0 0 0 0 0 0 0 0 ...
 $ Claddefo : num  0.25 1 0.33 0.15 1.97 0.37 0.15 0.67 0.08 0.47 ...
 $ Cladphyl : num  0 0 0 0 0 0 0 0 0 0 ...
Run 0 stress 0.1000211 
Run 1 stress 0.1000211 
... New best solution
... Procrustes: rmse 9.197687e-06  max resid 3.979097e-05 
... Similar to previous best
Run 2 stress 0.1000211 
... Procrustes: rmse 5.127887e-06  max resid 2.220649e-05 
... Similar to previous best
Run 3 stress 0.1532704 
Run 4 stress 0.1616352 
Run 5 stress 0.1715395 
Run 6 stress 0.1000211 
... Procrustes: rmse 8.464421e-06  max resid 3.677328e-05 
... Similar to previous best
Run 7 stress 0.1000211 
... Procrustes: rmse 7.61443e-07  max resid 2.013308e-06 
... Similar to previous best
Run 8 stress 0.1715395 
Run 9 stress 0.1000211 
... Procrustes: rmse 4.247079e-06  max resid 1.782754e-05 
... Similar to previous best
Run 10 stress 0.1000211 
... Procrustes: rmse 2.492803e-06  max resid 8.768106e-06 
... Similar to previous best
Run 11 stress 0.1000211 
... Procrustes: rmse 4.20853e-06  max resid 1.79074e-05 
... Similar to previous best
Run 12 stress 0.1000211 
... Procrustes: rmse 3.940032e-05  max resid 0.0001713289 
... Similar to previous best
Run 13 stress 0.1715395 
Run 14 stress 0.1616352 
Run 15 stress 0.1000211 
... Procrustes: rmse 1.087198e-06  max resid 3.276859e-06 
... Similar to previous best
Run 16 stress 0.1000211 
... Procrustes: rmse 6.276653e-06  max resid 2.552707e-05 
... Similar to previous best
Run 17 stress 0.1000211 
... Procrustes: rmse 7.623004e-06  max resid 3.278341e-05 
... Similar to previous best
Run 18 stress 0.1000211 
... Procrustes: rmse 3.192466e-06  max resid 1.38897e-05 
... Similar to previous best
Run 19 stress 0.160494 
Run 20 stress 0.1000211 
... Procrustes: rmse 2.910476e-06  max resid 8.08888e-06 
... Similar to previous best
*** Best solution repeated 13 times
'data.frame':	24 obs. of  45 variables:
 $ treatment: chr  "Trt1" "Trt1" "Trt1" "Trt1" ...
 $ Callvulg : num  0.55 0.67 0.1 0 0 ...
 $ Empenigr : num  11.13 0.17 1.55 15.13 12.68 ...
 $ Rhodtome : num  0 0 0 2.42 0 0 1.55 0 0.35 0.07 ...
 $ Vaccmyrt : num  0 0.35 0 5.92 0 ...
 $ Vaccviti : num  17.8 12.1 13.5 16 23.7 ...
 $ Pinusylv : num  0.07 0.12 0.25 0 0.03 0.12 0.1 0.1 0.05 0.12 ...
 $ Descflex : num  0 0 0 3.7 0 0.02 0.78 0 0.4 0 ...
 $ Betupube : num  0 0 0 0 0 0 0.02 0 0 0 ...
 $ Vacculig : num  1.6 0 0 1.12 0 0 2 0 0.2 0 ...
 $ Diphcomp : num  2.07 0 0 0 0 0 0 0 0 0.07 ...
 $ Dicrsp   : num  0 0.33 23.43 0 0 ...
 $ Dicrfusc : num  1.62 10.92 0 3.63 3.42 ...
 $ Dicrpoly : num  0 0.02 1.68 0 0.02 0.02 0 0.23 0.2 0 ...
 $ Hylosple : num  0 0 0 6.7 0 0 0 0 9.97 0 ...
 $ Pleuschr : num  4.67 37.75 32.92 58.07 19.42 ...
 $ Polypili : num  0.02 0.02 0 0 0.02 0.02 0 0 0 0 ...
 $ Polyjuni : num  0.13 0.23 0.23 0 2.12 1.58 0 0.02 0.08 0.02 ...
 $ Polycomm : num  0 0 0 0.13 0 0.18 0 0 0 0 ...
 $ Pohlnuta : num  0.13 0.03 0.32 0.02 0.17 0.07 0.1 0.13 0.07 0.03 ...
 $ Ptilcili : num  0.12 0.02 0.03 0.08 1.8 0.27 0.03 0.1 0.03 0.25 ...
 $ Barbhatc : num  0 0 0 0.08 0.02 0.02 0 0 0 0.07 ...
 $ Cladarbu : num  21.73 12.05 3.58 1.42 9.08 ...
 $ Cladrang : num  21.47 8.13 5.52 7.63 9.22 ...
 $ Cladstel : num  3.5 0.18 0.07 2.55 0.05 ...
 $ Cladunci : num  0.3 2.65 8.93 0.15 0.73 0.25 2.38 0.82 0.05 0.95 ...
 $ Cladcocc : num  0.18 0.13 0 0 0.08 0.1 0.17 0.15 0.02 0.17 ...
 $ Cladcorn : num  0.23 0.18 0.2 0.38 1.42 0.25 0.13 0.05 0.03 0.05 ...
 $ Cladgrac : num  0.25 0.23 0.48 0.12 0.5 0.18 0.18 0.22 0.07 0.23 ...
 $ Cladfimb : num  0.25 0.25 0 0.1 0.17 0.1 0.2 0.22 0.1 0.18 ...
 $ Cladcris : num  0.23 1.23 0.07 0.03 1.78 0.12 0.2 0.17 0.02 0.57 ...
 $ Cladchlo : num  0 0 0.1 0 0.05 0.05 0.02 0 0 0.02 ...
 $ Cladbotr : num  0 0 0.02 0.02 0.05 0.02 0 0 0.02 0.07 ...
 $ Cladamau : num  0.08 0 0 0 0 0 0 0 0 0 ...
 $ Cladsp   : num  0.02 0 0 0.02 0 0 0.02 0.02 0 0.07 ...
 $ Cetreric : num  0.02 0.15 0.78 0 0 0 0.02 0.18 0 0.18 ...
 $ Cetrisla : num  0 0.03 0.12 0 0 0 0 0.08 0.02 0.02 ...
 $ Flavniva : num  0.12 0 0 0 0.02 0.02 0 0 0 0 ...
 $ Nepharct : num  0.02 0 0 0 0 0 0 0 0 0 ...
 $ Stersp   : num  0.62 0.85 0.03 0 1.58 0.28 0 0.03 0.02 0.03 ...
 $ Peltapht : num  0.02 0 0 0.07 0.33 0 0 0 0 0.02 ...
 $ Icmaeric : num  0 0 0 0 0 0 0 0.07 0 0 ...
 $ Cladcerv : num  0 0 0 0 0 0 0 0 0 0 ...
 $ Claddefo : num  0.25 1 0.33 0.15 1.97 0.37 0.15 0.67 0.08 0.47 ...
 $ Cladphyl : num  0 0 0 0 0 0 0 0 0 0 ...
Run 0 stress 0.1000211 
Run 1 stress 0.1000211 
... New best solution
... Procrustes: rmse 6.89275e-06  max resid 2.995277e-05 
... Similar to previous best
Run 2 stress 0.1000211 
... Procrustes: rmse 1.02952e-05  max resid 4.473155e-05 
... Similar to previous best
Run 3 stress 0.1000211 
... Procrustes: rmse 5.88929e-06  max resid 2.530668e-05 
... Similar to previous best
Run 4 stress 0.1715395 
Run 5 stress 0.1000211 
... Procrustes: rmse 4.405969e-06  max resid 1.288429e-05 
... Similar to previous best
Run 6 stress 0.2113577 
Run 7 stress 0.1000211 
... Procrustes: rmse 7.21989e-06  max resid 3.085686e-05 
... Similar to previous best
Run 8 stress 0.1616352 
Run 9 stress 0.1000211 
... Procrustes: rmse 4.242484e-06  max resid 1.432356e-05 
... Similar to previous best
Run 10 stress 0.1613667 
Run 11 stress 0.1607504 
Run 12 stress 0.1616506 
Run 13 stress 0.2176736 
Run 14 stress 0.1000211 
... Procrustes: rmse 5.15725e-06  max resid 2.241307e-05 
... Similar to previous best
Run 15 stress 0.1000211 
... Procrustes: rmse 1.501269e-06  max resid 5.438198e-06 
... Similar to previous best
Run 16 stress 0.1926906 
Run 17 stress 0.1000211 
... Procrustes: rmse 8.477913e-06  max resid 3.656721e-05 
... Similar to previous best
Run 18 stress 0.1000211 
... Procrustes: rmse 3.743779e-06  max resid 1.601326e-05 
... Similar to previous best
Run 19 stress 0.1000211 
... Procrustes: rmse 9.0018e-07  max resid 2.888002e-06 
... Similar to previous best
Run 20 stress 0.1000211 
... Procrustes: rmse 6.341839e-06  max resid 2.71474e-05 
... Similar to previous best
*** Best solution repeated 12 times
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 46 ]
> 
> proc.time()
   user  system elapsed 
   3.31    0.53    3.85