R Under development (unstable) (2024-06-13 r86731 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(supportR)
> 
> test_check("supportR")
Following element(s) found in old object but not new: 
[1] "b" "x"
Following element(s) found in new object but not old: 
[1] "y" "z"
Following element(s) found in old object but not new: 
[1] "b" "x"
Following element(s) found in new object but not old: 
[1] "y" "z"
[1] "x" "b"
Following element(s) found in new object but not old: 
[1] "y" "z"
Following element(s) found in old object but not new: 
[1] "x" "b"
Following element(s) found in new object but not old: 
[1] "y" "z"
'data.frame':	24 obs. of  45 variables:
 $ treatment: chr  "Trt1" "Trt1" "Trt1" "Trt1" ...
 $ Callvulg : num  0.55 0.67 0.1 0 0 ...
 $ Empenigr : num  11.13 0.17 1.55 15.13 12.68 ...
 $ Rhodtome : num  0 0 0 2.42 0 0 1.55 0 0.35 0.07 ...
 $ Vaccmyrt : num  0 0.35 0 5.92 0 ...
 $ Vaccviti : num  17.8 12.1 13.5 16 23.7 ...
 $ Pinusylv : num  0.07 0.12 0.25 0 0.03 0.12 0.1 0.1 0.05 0.12 ...
 $ Descflex : num  0 0 0 3.7 0 0.02 0.78 0 0.4 0 ...
 $ Betupube : num  0 0 0 0 0 0 0.02 0 0 0 ...
 $ Vacculig : num  1.6 0 0 1.12 0 0 2 0 0.2 0 ...
 $ Diphcomp : num  2.07 0 0 0 0 0 0 0 0 0.07 ...
 $ Dicrsp   : num  0 0.33 23.43 0 0 ...
 $ Dicrfusc : num  1.62 10.92 0 3.63 3.42 ...
 $ Dicrpoly : num  0 0.02 1.68 0 0.02 0.02 0 0.23 0.2 0 ...
 $ Hylosple : num  0 0 0 6.7 0 0 0 0 9.97 0 ...
 $ Pleuschr : num  4.67 37.75 32.92 58.07 19.42 ...
 $ Polypili : num  0.02 0.02 0 0 0.02 0.02 0 0 0 0 ...
 $ Polyjuni : num  0.13 0.23 0.23 0 2.12 1.58 0 0.02 0.08 0.02 ...
 $ Polycomm : num  0 0 0 0.13 0 0.18 0 0 0 0 ...
 $ Pohlnuta : num  0.13 0.03 0.32 0.02 0.17 0.07 0.1 0.13 0.07 0.03 ...
 $ Ptilcili : num  0.12 0.02 0.03 0.08 1.8 0.27 0.03 0.1 0.03 0.25 ...
 $ Barbhatc : num  0 0 0 0.08 0.02 0.02 0 0 0 0.07 ...
 $ Cladarbu : num  21.73 12.05 3.58 1.42 9.08 ...
 $ Cladrang : num  21.47 8.13 5.52 7.63 9.22 ...
 $ Cladstel : num  3.5 0.18 0.07 2.55 0.05 ...
 $ Cladunci : num  0.3 2.65 8.93 0.15 0.73 0.25 2.38 0.82 0.05 0.95 ...
 $ Cladcocc : num  0.18 0.13 0 0 0.08 0.1 0.17 0.15 0.02 0.17 ...
 $ Cladcorn : num  0.23 0.18 0.2 0.38 1.42 0.25 0.13 0.05 0.03 0.05 ...
 $ Cladgrac : num  0.25 0.23 0.48 0.12 0.5 0.18 0.18 0.22 0.07 0.23 ...
 $ Cladfimb : num  0.25 0.25 0 0.1 0.17 0.1 0.2 0.22 0.1 0.18 ...
 $ Cladcris : num  0.23 1.23 0.07 0.03 1.78 0.12 0.2 0.17 0.02 0.57 ...
 $ Cladchlo : num  0 0 0.1 0 0.05 0.05 0.02 0 0 0.02 ...
 $ Cladbotr : num  0 0 0.02 0.02 0.05 0.02 0 0 0.02 0.07 ...
 $ Cladamau : num  0.08 0 0 0 0 0 0 0 0 0 ...
 $ Cladsp   : num  0.02 0 0 0.02 0 0 0.02 0.02 0 0.07 ...
 $ Cetreric : num  0.02 0.15 0.78 0 0 0 0.02 0.18 0 0.18 ...
 $ Cetrisla : num  0 0.03 0.12 0 0 0 0 0.08 0.02 0.02 ...
 $ Flavniva : num  0.12 0 0 0 0.02 0.02 0 0 0 0 ...
 $ Nepharct : num  0.02 0 0 0 0 0 0 0 0 0 ...
 $ Stersp   : num  0.62 0.85 0.03 0 1.58 0.28 0 0.03 0.02 0.03 ...
 $ Peltapht : num  0.02 0 0 0.07 0.33 0 0 0 0 0.02 ...
 $ Icmaeric : num  0 0 0 0 0 0 0 0.07 0 0 ...
 $ Cladcerv : num  0 0 0 0 0 0 0 0 0 0 ...
 $ Claddefo : num  0.25 1 0.33 0.15 1.97 0.37 0.15 0.67 0.08 0.47 ...
 $ Cladphyl : num  0 0 0 0 0 0 0 0 0 0 ...
Run 0 stress 0.1000211 
Run 1 stress 0.1733339 
Run 2 stress 0.1000211 
... Procrustes: rmse 3.908851e-05  max resid 0.0001683467 
... Similar to previous best
Run 3 stress 0.1616352 
Run 4 stress 0.1000211 
... New best solution
... Procrustes: rmse 2.480465e-06  max resid 1.059157e-05 
... Similar to previous best
Run 5 stress 0.1000211 
... New best solution
... Procrustes: rmse 6.677472e-06  max resid 2.870782e-05 
... Similar to previous best
Run 6 stress 0.2008414 
Run 7 stress 0.2175658 
Run 8 stress 0.1000211 
... New best solution
... Procrustes: rmse 1.58709e-06  max resid 4.58482e-06 
... Similar to previous best
Run 9 stress 0.219732 
Run 10 stress 0.1000211 
... Procrustes: rmse 6.217956e-06  max resid 1.776037e-05 
... Similar to previous best
Run 11 stress 0.1532704 
Run 12 stress 0.1532704 
Run 13 stress 0.3840943 
Run 14 stress 0.1607504 
Run 15 stress 0.1715395 
Run 16 stress 0.2157685 
Run 17 stress 0.1000211 
... Procrustes: rmse 7.487117e-06  max resid 3.195772e-05 
... Similar to previous best
Run 18 stress 0.1000211 
... Procrustes: rmse 6.946887e-06  max resid 2.916253e-05 
... Similar to previous best
Run 19 stress 0.1607505 
Run 20 stress 0.1532704 
*** Best solution repeated 4 times
'data.frame':	24 obs. of  45 variables:
 $ treatment: chr  "Trt1" "Trt1" "Trt1" "Trt1" ...
 $ Callvulg : num  0.55 0.67 0.1 0 0 ...
 $ Empenigr : num  11.13 0.17 1.55 15.13 12.68 ...
 $ Rhodtome : num  0 0 0 2.42 0 0 1.55 0 0.35 0.07 ...
 $ Vaccmyrt : num  0 0.35 0 5.92 0 ...
 $ Vaccviti : num  17.8 12.1 13.5 16 23.7 ...
 $ Pinusylv : num  0.07 0.12 0.25 0 0.03 0.12 0.1 0.1 0.05 0.12 ...
 $ Descflex : num  0 0 0 3.7 0 0.02 0.78 0 0.4 0 ...
 $ Betupube : num  0 0 0 0 0 0 0.02 0 0 0 ...
 $ Vacculig : num  1.6 0 0 1.12 0 0 2 0 0.2 0 ...
 $ Diphcomp : num  2.07 0 0 0 0 0 0 0 0 0.07 ...
 $ Dicrsp   : num  0 0.33 23.43 0 0 ...
 $ Dicrfusc : num  1.62 10.92 0 3.63 3.42 ...
 $ Dicrpoly : num  0 0.02 1.68 0 0.02 0.02 0 0.23 0.2 0 ...
 $ Hylosple : num  0 0 0 6.7 0 0 0 0 9.97 0 ...
 $ Pleuschr : num  4.67 37.75 32.92 58.07 19.42 ...
 $ Polypili : num  0.02 0.02 0 0 0.02 0.02 0 0 0 0 ...
 $ Polyjuni : num  0.13 0.23 0.23 0 2.12 1.58 0 0.02 0.08 0.02 ...
 $ Polycomm : num  0 0 0 0.13 0 0.18 0 0 0 0 ...
 $ Pohlnuta : num  0.13 0.03 0.32 0.02 0.17 0.07 0.1 0.13 0.07 0.03 ...
 $ Ptilcili : num  0.12 0.02 0.03 0.08 1.8 0.27 0.03 0.1 0.03 0.25 ...
 $ Barbhatc : num  0 0 0 0.08 0.02 0.02 0 0 0 0.07 ...
 $ Cladarbu : num  21.73 12.05 3.58 1.42 9.08 ...
 $ Cladrang : num  21.47 8.13 5.52 7.63 9.22 ...
 $ Cladstel : num  3.5 0.18 0.07 2.55 0.05 ...
 $ Cladunci : num  0.3 2.65 8.93 0.15 0.73 0.25 2.38 0.82 0.05 0.95 ...
 $ Cladcocc : num  0.18 0.13 0 0 0.08 0.1 0.17 0.15 0.02 0.17 ...
 $ Cladcorn : num  0.23 0.18 0.2 0.38 1.42 0.25 0.13 0.05 0.03 0.05 ...
 $ Cladgrac : num  0.25 0.23 0.48 0.12 0.5 0.18 0.18 0.22 0.07 0.23 ...
 $ Cladfimb : num  0.25 0.25 0 0.1 0.17 0.1 0.2 0.22 0.1 0.18 ...
 $ Cladcris : num  0.23 1.23 0.07 0.03 1.78 0.12 0.2 0.17 0.02 0.57 ...
 $ Cladchlo : num  0 0 0.1 0 0.05 0.05 0.02 0 0 0.02 ...
 $ Cladbotr : num  0 0 0.02 0.02 0.05 0.02 0 0 0.02 0.07 ...
 $ Cladamau : num  0.08 0 0 0 0 0 0 0 0 0 ...
 $ Cladsp   : num  0.02 0 0 0.02 0 0 0.02 0.02 0 0.07 ...
 $ Cetreric : num  0.02 0.15 0.78 0 0 0 0.02 0.18 0 0.18 ...
 $ Cetrisla : num  0 0.03 0.12 0 0 0 0 0.08 0.02 0.02 ...
 $ Flavniva : num  0.12 0 0 0 0.02 0.02 0 0 0 0 ...
 $ Nepharct : num  0.02 0 0 0 0 0 0 0 0 0 ...
 $ Stersp   : num  0.62 0.85 0.03 0 1.58 0.28 0 0.03 0.02 0.03 ...
 $ Peltapht : num  0.02 0 0 0.07 0.33 0 0 0 0 0.02 ...
 $ Icmaeric : num  0 0 0 0 0 0 0 0.07 0 0 ...
 $ Cladcerv : num  0 0 0 0 0 0 0 0 0 0 ...
 $ Claddefo : num  0.25 1 0.33 0.15 1.97 0.37 0.15 0.67 0.08 0.47 ...
 $ Cladphyl : num  0 0 0 0 0 0 0 0 0 0 ...
Run 0 stress 0.1000211 
Run 1 stress 0.2110358 
Run 2 stress 0.1000211 
... New best solution
... Procrustes: rmse 8.344121e-06  max resid 3.587388e-05 
... Similar to previous best
Run 3 stress 0.1000211 
... Procrustes: rmse 9.234594e-06  max resid 3.983413e-05 
... Similar to previous best
Run 4 stress 0.1616352 
Run 5 stress 0.2181863 
Run 6 stress 0.1604942 
Run 7 stress 0.1000211 
... Procrustes: rmse 4.560799e-06  max resid 1.934468e-05 
... Similar to previous best
Run 8 stress 0.1000211 
... New best solution
... Procrustes: rmse 3.124877e-06  max resid 1.266853e-05 
... Similar to previous best
Run 9 stress 0.1000211 
... Procrustes: rmse 6.357995e-06  max resid 2.762963e-05 
... Similar to previous best
Run 10 stress 0.1532704 
Run 11 stress 0.2155558 
Run 12 stress 0.1000211 
... Procrustes: rmse 4.255608e-05  max resid 0.0001818796 
... Similar to previous best
Run 13 stress 0.1715395 
Run 14 stress 0.1000211 
... Procrustes: rmse 1.292502e-05  max resid 5.423892e-05 
... Similar to previous best
Run 15 stress 0.1000211 
... Procrustes: rmse 9.605786e-06  max resid 4.075847e-05 
... Similar to previous best
Run 16 stress 0.1000211 
... Procrustes: rmse 1.368468e-06  max resid 4.723287e-06 
... Similar to previous best
Run 17 stress 0.1000211 
... Procrustes: rmse 8.615142e-06  max resid 3.748018e-05 
... Similar to previous best
Run 18 stress 0.1000211 
... Procrustes: rmse 5.717116e-06  max resid 2.475643e-05 
... Similar to previous best
Run 19 stress 0.1000211 
... New best solution
... Procrustes: rmse 1.946615e-06  max resid 8.342769e-06 
... Similar to previous best
Run 20 stress 0.1000211 
... Procrustes: rmse 1.214534e-05  max resid 5.265287e-05 
... Similar to previous best
*** Best solution repeated 2 times
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 43 ]
> 
> proc.time()
   user  system elapsed 
   1.95    0.25    2.21