context("Checking cvodes Solution Size") test_that("Size of solution is as expected", { ODE_R <- function(t, y, p){ # vector containing the right hand side gradients ydot = vector(mode = "numeric", length = length(y)) # R indices start from 1 ydot[1] = -p[1]*y[1] + p[2]*y[2]*y[3] ydot[2] = p[1]*y[1] - p[2]*y[2]*y[3] - p[3]*y[2]*y[2] ydot[3] = p[3]*y[2]*y[2] # ydot[1] = -0.04 * y[1] + 10000 * y[2] * y[3] # ydot[3] = 30000000 * y[2] * y[2] # ydot[2] = -ydot[1] - ydot[3] ydot } # R code to genrate time vector, IC and solve the equations time_vec <- c(0.0, 0.4, 4.0, 40.0, 4E2, 4E3, 4E4, 4E5, 4E6, 4E7, 4E8, 4E9, 4E10) IC <- c(1,0,0) params <- c(0.04, 10000, 30000000) reltol <- 1e-04 abstol <- c(1e-8,1e-14,1e-6) ## Solving the ODEs and Sensitivities using cvodes function df1 <- cvodes(time_vec, IC, ODE_R , params, reltol, abstol,"STG",FALSE) ## Expect solution to have same rows as time vector expect_equal(length(time_vec), nrow(df1)) ## Expect solution to have same columns as length(IC) * length(params) + 1 (first column is time) expect_equal(length(IC) * length(params) + 1, ncol(df1)) })