downloading reverse dependencies ... downloading qs_0.27.3.tar.gz ... ok downloading qs2_0.1.5.tar.gz ... ok installing dependencies ‘qs2’, ‘stringfish’ begin installing package ‘stringfish’ * installing *source* package ‘stringfish’ ... ** this is package ‘stringfish’ version ‘0.17.0’ ** using staged installation checking for pkg-config... /usr/bin/pkg-config stringfish configure script PCRE2 10.45 library detected -- skipping PCRE2 compilation -lpcre2-8 configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmplPqEY5/R.INSTALL1a5b101e21c33a/stringfish/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sf_functions.cpp -o sf_functions.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb.h:32, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel/TBB.h:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel.h:24, from sf_functions.cpp:2: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here 251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id); | ~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(long unsigned int)’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here 291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL ) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::hash_map_base::bucket*’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::split_ordered_list >, tbb::tbb_allocator > > >::node*]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:249:63: required from ‘tbb::interface5::internal::split_ordered_list::node* tbb::interface5::internal::split_ordered_list::node::atomic_set_next(tbb::interface5::internal::split_ordered_list::nodeptr_t, tbb::interface5::internal::split_ordered_list::nodeptr_t) [with T = std::pair >; Allocator = tbb::tbb_allocator > >; tbb::interface5::internal::split_ordered_list::nodeptr_t = tbb::interface5::internal::split_ordered_list >, tbb::tbb_allocator > > >::node*]’ 249 | nodeptr_t exchange_node = tbb::internal::as_atomic(my_next).compare_and_swap(new_node, current_node); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:510:41: required from ‘static tbb::interface5::internal::split_ordered_list::node* tbb::interface5::internal::split_ordered_list::try_insert_atomic(nodeptr_t, nodeptr_t, nodeptr_t) [with T = std::pair >; Allocator = tbb::tbb_allocator > >; nodeptr_t = tbb::interface5::internal::split_ordered_list >, tbb::tbb_allocator > > >::node*]’ 510 | return previous->atomic_set_next(new_node, current_node); | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:516:52: required from ‘std::pair, typename std::allocator_traits::type>::value_type>, bool> tbb::interface5::internal::split_ordered_list::try_insert(raw_iterator, raw_iterator, nodeptr_t, size_type*) [with T = std::pair >; Allocator = tbb::tbb_allocator > >; typename std::allocator_traits::type>::value_type = std::pair >; typename tbb::internal::allocator_rebind::type = std::allocator_traits > > >::rebind_alloc > >; raw_iterator = tbb::interface5::internal::flist_iterator >, tbb::tbb_allocator > > >, std::pair > >; nodeptr_t = tbb::interface5::internal::split_ordered_list >, tbb::tbb_allocator > > >::node*; size_type = long unsigned int]’ 516 | nodeptr_t inserted_node = try_insert_atomic(it.get_node_ptr(), pnode, next.get_node_ptr()); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:1420:72: required from ‘std::pair::iterator, bool> tbb::interface5::internal::concurrent_unordered_base::internal_insert(ValueType&&, nodeptr_t) [with AllowCreate = tbb::internal::bool_constant; AllowDestroy = tbb::internal::bool_constant; ValueType = std::pair >&; Traits = tbb::interface5::concurrent_unordered_map_traits, tbb::interface5::internal::hash_compare >, tbb::tbb_allocator > >, false>; typename tbb::interface5::internal::split_ordered_list::iterator = tbb::interface5::internal::solist_iterator >, tbb::tbb_allocator > > >, std::pair > >; typename Traits::value_type = std::pair >; typename Traits::allocator_type = std::allocator_traits > > >::rebind_alloc > >; nodeptr_t = tbb::interface5::internal::split_ordered_list >, tbb::tbb_allocator > > >::node*]’ 1420 | std::pair result = my_solist.try_insert(previous, where, pnode, &new_count); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/internal/_concurrent_unordered_impl.h:1101:74: required from ‘std::pair::iterator, bool> tbb::interface5::internal::concurrent_unordered_base::emplace(Args&& ...) [with Args = {RStringIndexer::rstring_info&, int&}; Traits = tbb::interface5::concurrent_unordered_map_traits, tbb::interface5::internal::hash_compare >, tbb::tbb_allocator > >, false>; typename tbb::interface5::internal::split_ordered_list::iterator = tbb::interface5::internal::solist_iterator >, tbb::tbb_allocator > > >, std::pair > >; typename Traits::value_type = std::pair >; typename Traits::allocator_type = std::allocator_traits > > >::rebind_alloc > >]’ 1100 | return internal_insert(pnode->my_element, pnode); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ sf_functions.cpp:1362:35: required from here 1362 | auto p = table_hash->emplace(q, newval); // | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::split_ordered_list >, tbb::tbb_allocator > > >::node*’ to ‘tbb::atomic >, tbb::tbb_allocator > > >::node*>&’ does not use ‘constexpr tbb::atomic::atomic(T*) [with T = tbb::interface5::internal::split_ordered_list >, tbb::tbb_allocator > > >::node]’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DPCRE2_CODE_UNIT_WIDTH=8 -DHAVE_CONFIG_H -I. -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c PCRE2_wrapper/pcre2_wrapper.cpp -o PCRE2_wrapper/pcre2_wrapper.o ar rcs libSFPCRE2.a PCRE2_wrapper/pcre2_wrapper.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o stringfish.so RcppExports.o sf_functions.o -lpthread -L. -lSFPCRE2 -lpcre2-8 -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmplPqEY5/R.INSTALL1a5b101e21c33a/stringfish/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stringfish/00new/stringfish/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stringfish) begin installing package ‘qs2’ * installing *source* package ‘qs2’ ... ** this is package ‘qs2’ version ‘0.1.5’ ** package ‘qs2’ successfully unpacked and MD5 sums checked ** using staged installation checking for pkg-config... /usr/bin/pkg-config checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-14 -std=gnu++17 accepts -g... yes C++ compiler: g++-14 -std=gnu++17 zstd 1.5.7 library detected -- skipping zstd compilation Fixed blocksize Not using TBB configure: creating ./config.status config.status: creating src/Makevars ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpc6pMIn/R.INSTALL1a5d64214956e7/qs2/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -DIS_UTF8_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/stringfish/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=0 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -DRCPP_NO_RTTI -DRCPP_NO_SUGAR -I../inst/include -I. -DIS_UTF8_LOCALE=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/tmp/CRAN_recheck/Library/stringfish/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRCPP_PARALLEL_USE_TBB=0 -fpic -g -O2 -Wall -pedantic -mtune=native -c qx_functions.cpp -o qx_functions.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o qs2.so RcppExports.o qx_functions.o -L. -lzstd -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpc6pMIn/R.INSTALL1a5d64214956e7/qs2/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-qs2/00new/qs2/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qs2) checking stringfish_0.17.0.tar.gz ... checking qs_0.27.3.tar.gz ... checking qs2_0.1.5.tar.gz ... Depends: Package: stringfish Depends: R (>= 3.6.0) Imports: Rcpp, RcppParallel LinkingTo: Rcpp (>= 0.12.18.3), RcppParallel (>= 5.1.4) Timings: user system elapsed stringfish 68.218 7.216 80.64 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 1 Check results summary: stringfish ... OK rdepends_qs ... NOTE * checking compiled code ... NOTE rdepends_qs2 ... OK