* using log directory ‘/srv/hornik/tmp/CRAN/statGraph.Rcheck’
* using R Under development (unstable) (2024-01-20 r85814)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 17.0.6 (3)
    Debian flang-new version 17.0.6 (3)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘statGraph/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘statGraph’ version ‘0.5.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Grover E. Castro Guzman <grover@usp.br>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  ANOGVA (16:15)
  Cerqueira (25:7)
  Fraiman (26:7, 26:19)
  Fujita (20:7, 27:7)
  Futija (19:7)
  GIC (14:58)
  Ghoshdastidar (23:7, 24:7)
  Takahashi (18:19)
  al (18:32, 19:17, 20:17, 21:15, 22:15, 23:24, 24:24, 25:20, 27:17)
  et (18:29, 19:14, 20:14, 21:12, 22:12, 23:21, 24:21, 25:17, 27:14)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2024-01-11 as issues were not corrected
    in time.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘statGraph’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... NOTE
Maintainer field differs from that derived from Authors@R
  Maintainer: ‘Grover E. Castro Guzman <grover@usp.br>’
  Authors@R:  ‘Andre Fujita <andrefujita@usp.br>’

Dependence on R version ‘4.3.2’ not with patchlevel 0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... NOTE
Mismatches for apparent methods not registered:
t.test:
  function(x, ...)
t.test.stat:
  function(X, Y, sigma)

t:
  function(x)
t.rect.dist:
  function(X, Y)

t:
  function(x)
t.sampling.distribution:
  function(G1, dim, bootstrap_sample_size)

t:
  function(x)
t.embed.graph:
  function(g, dim)

t:
  function(x)
t.p_value:
  function(ts, test_distribution)

t:
  function(x)
t.get.sigma:
  function(X1, X2)

t:
  function(x)
t.validateInput:
  function(G1, G2, dim, maxBoot)

c:
  function(...)
c.test:
  function(g, gp)

c:
  function(...)
c.transform:
  function(g, n)

c:
  function(...)
c.sampling.distribution:
  function(g, gp, maxBoot)
See section ‘Registering S3 methods’ in the ‘Writing R Extensions’
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] NOTE
Found if() conditions comparing class() to string:
File ‘statGraph/R/statGraph.R’: if (class(model) == "list") ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "matrix") ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "character") ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "function" && is.null(parameters)) ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "function" && classic == FALSE) ...
File ‘statGraph/R/statGraph.R’: if (class(models) == "list" && is.null(parameters)) ...
File ‘statGraph/R/statGraph.R’: if (class(models) == "character") ...
File ‘statGraph/R/statGraph.R’: if (class(models) == "list") ...
File ‘statGraph/R/statGraph.R’: if (class(x) == "list" && class(x[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(y) == "list" && class(y[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G) == "list" && class(G[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(graph) == "list" && class(graph[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(spectra) == "list") ...
File ‘statGraph/R/statGraph.R’: if (class(spectra) == "list") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) == "list" && class(G1[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G2) == "list" && class(G2[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G) == "list" && class(G[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(x) == "list" && class(x[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(x) == "list" && class(x[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) == "list" && class(G1[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G2) == "list" && class(G2[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) == "igraph" && class(G2) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) != "list" || class(G1[[1]]) != "matrix") ...
File ‘statGraph/R/statGraph.R’: if (class(G2) != "list" || class(G2[[1]]) != "matrix") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) == "list" && class(G1[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G2) == "list" && class(G2[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G) == "list" && class(G[[1]]) == "list" && class(G[[1]][[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G) != "list" || class(G[[1]]) != "list" || class(G[[1]][[1]]) != "matrix") ...
File ‘statGraph/R/statGraph.R’: if (class(g) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(g) == "list" && class(g[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(g) == "list" && class(g[[1]]) == "list") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) == "dgCMatrix") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) == "matrix") ...
File ‘statGraph/R/statGraph.R’: if (class(G1) != "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(G2) == "dgCMatrix") ...
File ‘statGraph/R/statGraph.R’: if (class(G2) == "matrix") ...
File ‘statGraph/R/statGraph.R’: if (class(G2) != "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(dim) != "numeric" && !is.integer(dim)) ...
File ‘statGraph/R/statGraph.R’: if (class(maxBoot) != "numeric") ...
File ‘statGraph/R/statGraph.R’: if (class(g) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(g) == "list" && class(g[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(x) == "list" && class(x[[1]]) == "igraph") ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "function" && (is.null(lo) || is.null(hi))) ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "character") ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "function") ...
File ‘statGraph/R/statGraph.R’: if (class(model) == "function") ...
Use inherits() (or maybe is()) instead.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [8s/15s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 4 NOTEs