downloading reverse dependencies ‘boostrq’, ‘CRE’, ‘DIFboost’, ‘FDboost’, ‘gamboostLSS’, ‘mboost’, ‘mermboost’, ‘flevr’, ‘knockoff’ trying URL 'file:///data/Repositories/CRAN/src/contrib/boostrq_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CRE_0.2.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DIFboost_0.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/FDboost_1.1-3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/gamboostLSS_2.2-0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mboost_2.9-11.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mermboost_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/flevr_0.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/knockoff_0.3.6.tar.gz' installing dependencies ‘bartCause’, ‘BayesX’, ‘DirichletReg’, ‘gamboostLSS’, ‘hdi’, ‘kangar00’, ‘R2BayesX’, ‘Rdsdp’, ‘RPtests’, ‘RRF’, ‘stabs’, ‘vimp’ also installing the dependency ‘scalreg’ begin installing package ‘scalreg’ begin installing package ‘RRF’ begin installing package ‘bartCause’ begin installing package ‘BayesX’ begin installing package ‘R2BayesX’ begin installing package ‘DirichletReg’ begin installing package ‘kangar00’ begin installing package ‘vimp’ begin installing package ‘Rdsdp’ begin installing package ‘RPtests’ begin installing package ‘stabs’ * installing *source* package ‘scalreg’ ... ** this is package ‘scalreg’ version ‘1.0.1’ ** package ‘scalreg’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scalreg) begin installing package ‘hdi’ * installing *source* package ‘stabs’ ... ** this is package ‘stabs’ version ‘0.7-1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stabs) begin installing package ‘gamboostLSS’ * installing *source* package ‘BayesX’ ... ** this is package ‘BayesX’ version ‘0.3-3’ ** package ‘BayesX’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BayesX) * installing *source* package ‘DirichletReg’ ... ** this is package ‘DirichletReg’ version ‘0.7-2’ ** package ‘DirichletReg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRTJmGv/R.INSTALL26e7537bac8170/DirichletReg/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ddirichlet.c -o ddirichlet.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rdirichlet.c -o rdirichlet.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wght_LL.c -o wght_LL.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wght_LL_grad_alternative.c -o wght_LL_grad_alternative.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wght_LL_grad_common.c -o wght_LL_grad_common.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o DirichletReg.so ddirichlet.o init.o rdirichlet.o wght_LL.o wght_LL_grad_alternative.o wght_LL_grad_common.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRTJmGv/R.INSTALL26e7537bac8170/DirichletReg/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-DirichletReg/00new/DirichletReg/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DirichletReg) * installing *source* package ‘bartCause’ ... ** this is package ‘bartCause’ version ‘1.0-10’ ** package ‘bartCause’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bartCause) * installing *source* package ‘RRF’ ... ** this is package ‘RRF’ version ‘1.9.4.1’ ** package ‘RRF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzDABHf/R.INSTALL26e74e461666c1/RRF/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o classTree.c: In function ‘predictClassTree’: classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ classTree.c:425:22: note: ‘cbestsplit’ was declared here 425 | int m, i, j, k, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o regTree.c: In function ‘predictRegTree’: regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ regTree.c:308:22: note: ‘cbestsplit’ was declared here 308 | int i, j, k, m, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable] 64 | int flagReg;//new | ^~~~~~~ regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand, | ^~~~~~ regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:57:36: note: ‘ytree’ was declared here 57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini; | ^~~~~ regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:63:30: note: ‘nodexts’ was declared here 63 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o rf.c: In function ‘classRF’: rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable] 110 | *tp, *wr; | ^~ rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized] 437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:102:43: note: ‘oobpair’ was declared here 102 | *at, *a, *b, *mind, *nind, *jts, *oobpair; | ^~~~~~~ rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized] 385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | errts + jb*(nclass+1), *labelts, nclts, cut); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:96:29: note: ‘nclts’ was declared here 96 | *nrightimp, *nout, *nclts, Ntree; | ^~~~~ gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfsub.f -o rfsub.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzDABHf/R.INSTALL26e74e461666c1/RRF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RRF/00new/RRF/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRF) * installing *source* package ‘vimp’ ... ** this is package ‘vimp’ version ‘2.3.6’ ** package ‘vimp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vimp) * installing *source* package ‘kangar00’ ... ** this is package ‘kangar00’ version ‘1.4.2’ ** package ‘kangar00’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (kangar00) * installing *source* package ‘hdi’ ... ** this is package ‘hdi’ version ‘0.1-10’ ** package ‘hdi’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hdi) * installing *source* package ‘gamboostLSS’ ... ** this is package ‘gamboostLSS’ version ‘2.2-0’ ** package ‘gamboostLSS’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamboostLSS) * installing *source* package ‘RPtests’ ... ** this is package ‘RPtests’ version ‘0.1.5’ ** package ‘RPtests’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSzmAYB/R.INSTALL26e759499f0000/RPtests/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Aux_functions.cpp -o Aux_functions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RPtests.so Aux_functions.o RcppExports.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSzmAYB/R.INSTALL26e759499f0000/RPtests/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RPtests/00new/RPtests/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RPtests) * installing *source* package ‘R2BayesX’ ... ** this is package ‘R2BayesX’ version ‘1.1-6’ ** package ‘R2BayesX’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5KyH6W/R.INSTALL26e7516ac4d049/R2BayesX/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R2BayesX_functions.c -o R2BayesX_functions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R2BayesX_init.c -o R2BayesX_init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o R2BayesX.so R2BayesX_functions.o R2BayesX_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5KyH6W/R.INSTALL26e7516ac4d049/R2BayesX/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-R2BayesX/00new/R2BayesX/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (R2BayesX) * installing *source* package ‘Rdsdp’ ... ** this is package ‘Rdsdp’ version ‘1.0.6’ ** package ‘Rdsdp’ successfully unpacked and MD5 sums checked ** using staged installation ./configure: line 2303: -z: command not found Using bundled DSDP checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking how to run the C preprocessor... gcc-15 -E R_INCLUDE_DIR=/home/hornik/tmp/R/include configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Idsdp/include -DUSING_R -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rdsdp.c -o Rdsdp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -Idsdp/include -DUSING_R -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rreadsdpa.c -o Rreadsdpa.o Rreadsdpa.c: In function ‘ReadSDPA2’: Rreadsdpa.c:489:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable] 489 | char* fgets_return_pt; | ^~~~~~~~~~~~~~~ Rreadsdpa.c:488:7: warning: variable ‘fscanf_return_int’ set but not used [-Wunused-but-set-variable] 488 | int fscanf_return_int; | ^~~~~~~~~~~~~~~~~ Rreadsdpa.c: In function ‘DSDPReadOptions2’: Rreadsdpa.c:1021:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable] 1021 | char* fgets_return_pt; | ^~~~~~~~~~~~~~~ (cd dsdp && \ (make dsdplibrary CC="gcc-15" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include " AR="ar" RANLIB="ranlib") && \ touch dsdp.ts) make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp' ========================================== Compiling DSDP5 For help with installation problems, please send EVERYTHING printed out below to the developers ========================================== On Sat Jan 31 16:39:07 CET 2026 on anduin2 Machine characteristics: Linux anduin2 6.16.7+deb14-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.16.7-1 (2025-09-11) x86_64 GNU/Linux ----------------------------------------- Using C compiler: gcc-15 Using compiler options: -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include ----------------------------------------- Current Directory: /home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp Using DSDP directory: ../../ ========================================== cd src; make all make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src' cd solver; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/solver' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dualalg.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dualimpl.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcops.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpschurmat.c dsdpschurmat.c: In function ‘DSDPSetFixedVariables’: dsdpschurmat.c:696:10: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 696 | int i,info; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcg.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpconverge.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetup.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpcone.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetoptions.c dsdpsetoptions.c: In function ‘DSDPReadOptions’: dsdpsetoptions.c:152:9: warning: variable ‘fgets_return_pt’ set but not used [-Wunused-but-set-variable] 152 | char* fgets_return_pt; | ^~~~~~~~~~~~~~~ dsdpsetoptions.c:147:9: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 147 | int i,info,line=0; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpsetdata.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdprescone.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpobjcone.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpprintout.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpschurmatadd.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -c dsdpx.c dsdpx.c: In function ‘DSDPComputeX’: dsdpx.c:57:76: warning: variable ‘rpobjerr’ set but not used [-Wunused-but-set-variable] 57 | double pobj=0,ppobj2=0,ddobj,tracexs=0,tracexs2=0,rpinfeas=0,rpinfeas2=0,rpobjerr=0; | ^~~~~~~~ ar cr ../..//lib/libdsdp.a dualalg.o dualimpl.o dsdpcops.o dsdpschurmat.o dsdpcg.o dsdpconverge.o dsdpsetup.o dsdpcone.o dsdpsetoptions.o dsdpsetdata.o dsdprescone.o dsdpobjcone.o dsdpprintout.o dsdpschurmatadd.o dsdpx.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/solver' rm -f dualalg.o dualimpl.o dsdpcops.o dsdpschurmat.o dsdpcg.o dsdpconverge.o dsdpsetup.o dsdpcone.o dsdpsetoptions.o dsdpsetdata.o dsdprescone.o dsdpobjcone.o dsdpprintout.o dsdpschurmatadd.o dsdpx.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/solver' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/solver' cd sdp; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/sdp' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dsdpstep.c dsdpstep.c: In function ‘ComputeStepROBUST’: dsdpstep.c:283:10: warning: variable ‘LDA’ set but not used [-Wunused-but-set-variable] 283 | int N, LDA, LWORK; | ^~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c printsdpa.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpconevec.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c sdpsss.c sdpsss.c: In function ‘CountNonzeros’: sdpsss.c:59:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 59 | for (j=0;jn; | ^~~ dlpack.c: In function ‘DenseSymPSDNormF2’: dlpack.c:423:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 423 | int info; | ^~~~ dlpack.c: In function ‘DSDPXMatPCreateWithData’: dlpack.c:587:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 587 | double dtmp; | ^~~~ dlpack.c: In function ‘DvechmatGetRowAdd’: dlpack.c:717:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 717 | int info; | ^~~~ dlpack.c: In function ‘DSDPGetDMat’: dlpack.c:939:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 939 | double dtmp; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c dufull.c dufull.c: In function ‘DSDPGetEigs2’: dufull.c:163:23: warning: variable ‘LDZ’ set but not used [-Wunused-but-set-variable] 163 | ffinteger N=n,LDA=n,LDZ=n,LWORK=nd,INFO=0; | ^~~ dufull.c: In function ‘DTRUMatSolve’: dufull.c:255:13: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] 255 | ffinteger ierr,INFO=0,NRHS=1,LDA=A->LDA,LDB=A->LDA,N=A->n; | ^~~~ dufull.c: In function ‘DSDPLAPACKSUDualMatCreate2P’: dufull.c:822:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 822 | int info; | ^~~~ dufull.c: In function ‘DenseSymPSDNormF2’: dufull.c:855:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 855 | int info; | ^~~~ dufull.c: In function ‘DSDPXMatUCreateWithData’: dufull.c:958:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 958 | double dtmp; | ^~~~ dufull.c: In function ‘DvecumatGetRowAdd’: dufull.c:1075:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 1075 | int info; | ^~~~ dufull.c: In function ‘DSDPGetDUMat’: dufull.c:1302:10: warning: variable ‘dtmp’ set but not used [-Wunused-but-set-variable] 1302 | double dtmp; | ^~~~ dufull.c: At top level: dufull.c:340:12: warning: ‘DTRUMatView2’ defined but not used [-Wunused-function] 340 | static int DTRUMatView2(void* AA){ | ^~~~~~~~~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpvec.c sdpvec.c: In function ‘DSDPVecSetBasis’: sdpvec.c:138:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 138 | int info; | ^~~~ sdpvec.c: In function ‘DSDPVecWAXPY’: sdpvec.c:341:7: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 341 | int info; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c identity.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c spds.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c zeromat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c onemat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c diag.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c rmmat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c cholmat.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c cholmat2.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c dtrsm2.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpmatx.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpnfac.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdporder.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpalloc.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpsymb.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpxlist.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpdvct.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -I../sdp -c sdpexit.c ar cr ../..//lib/libdsdp.a vech.o vechu.o drowcol.o dlpack.o dufull.o sdpvec.o identity.o spds.o zeromat.o onemat.o diag.o rmmat.o cholmat.o cholmat2.o dtrsm2.o sdpmatx.o sdpnfac.o sdporder.o sdpalloc.o sdpsymb.o sdpxlist.o sdpdvct.o sdpexit.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/vecmat' rm -f vech.o vechu.o drowcol.o dlpack.o dufull.o sdpvec.o identity.o spds.o zeromat.o onemat.o diag.o rmmat.o cholmat.o cholmat2.o dtrsm2.o sdpmatx.o sdpnfac.o sdporder.o sdpalloc.o sdpsymb.o sdpxlist.o sdpdvct.o sdpexit.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/vecmat' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/vecmat' cd sys; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/sys' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdperror.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdploginfo.c dsdploginfo.c: In function ‘DSDPLogInfoAllow’: dsdploginfo.c:70:10: warning: variable ‘ierr’ set but not used [-Wunused-but-set-variable] 70 | char* ierr; | ^~~~ dsdploginfo.c: In function ‘DSDPLogFInfo’: dsdploginfo.c:118:15: warning: variable ‘urank’ set but not used [-Wunused-but-set-variable] 118 | int urank; | ^~~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdplog.c gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -DDSDP_TIME -c dsdptime.c ar cr ../..//lib/libdsdp.a dsdperror.o dsdploginfo.o dsdplog.o dsdptime.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/sys' rm -f dsdperror.o dsdploginfo.o dsdplog.o dsdptime.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/sys' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/sys' cd bounds; make dsdplib; make[4]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/bounds' gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c dbounds.c dbounds.c: In function ‘BConeComputeS’: dbounds.c:90:12: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 90 | int i,ii,info; | ^~~~ dbounds.c: In function ‘LPANorm2’: dbounds.c:366:12: warning: variable ‘info’ set but not used [-Wunused-but-set-variable] 366 | int i,ii,info; | ^~~~ gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DNOSHORTS -I/home/hornik/tmp/R/include -DUSING_R -fpic -DNOSHORTS -I../../include -I../solver -c allbounds.c allbounds.c: In function ‘LUBoundsHessian’: allbounds.c:100:18: warning: variable ‘asrs’ set but not used [-Wunused-but-set-variable] 100 | double assa,as,asrs=0,sl,su; | ^~~~ ar cr ../..//lib/libdsdp.a dbounds.o allbounds.o ranlib ../..//lib/libdsdp.a make clean make[5]: Entering directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/bounds' rm -f dbounds.o allbounds.o make[5]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/bounds' make[4]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src/bounds' make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp/src' make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src/dsdp' gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Rdsdp.so Rdsdp.o Rreadsdpa.o -Ldsdp/lib -ldsdp -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -lm -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpg95Boy/R.INSTALL26e75b48c93b29/Rdsdp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-Rdsdp/00new/Rdsdp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Rdsdp) checking stabs_0.7-1.tar.gz ... checking boostrq_1.0.0.tar.gz ... checking CRE_0.2.7.tar.gz ... checking DIFboost_0.4.tar.gz ... checking FDboost_1.1-3.tar.gz ... checking gamboostLSS_2.2-0.tar.gz ... checking mboost_2.9-11.tar.gz ... checking mermboost_0.1.1.tar.gz ... checking flevr_0.0.5.tar.gz ... checking knockoff_0.3.6.tar.gz ... Depends: Package: stabs Depends: R (>= 2.14.0), methods, stats, parallel Imports: graphics, grDevices, utils Timings: user system elapsed stabs 30.958 10.738 39.996 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 8 Check results summary: stabs ... OK rdepends_boostrq ... OK rdepends_CRE ... OK rdepends_DIFboost ... OK rdepends_FDboost ... OK rdepends_flevr ... OK rdepends_gamboostLSS ... OK rdepends_knockoff ... NOTE * checking Rd files ... [0s/0s] NOTE rdepends_mboost ... OK rdepends_mermboost ... OK