# Test replacers for the sake of code coverage test_that("Replacers work as expected", { # Boundaries expect_equal({ spm_boundaries(boundary) <- sfa_boundaries spm_boundaries(boundary) }, sfa_boundaries) expect_equal({ spm_boundary(boundary) <- "new_col" spm_boundary(boundary) }, "new_col") expect_equal({ spm_boundary_area(boundary) <- "new_col_2" spm_boundary_area(boundary) }, "new_col_2") expect_equal({ discret_method_2 <- discret_method spm_name(discret_method_2) <- "triangulate_delaunay" spm_discret_method(boundary_discrete) <- discret_method_2 spm_discret_method(boundary_discrete) }, discret_method_2) expect_equal({ spm_points(boundary_discrete) <- sfa_boundaries spm_points(boundary_discrete) }, sfa_boundaries) expect_equal({ spm_patches(boundary_discrete) <- sfa_boundaries spm_patches(boundary_discrete) }, sfa_boundaries) expect_equal({ spm_patches_area(boundary_discrete) <- "new_col_3" spm_patches_area(boundary_discrete) }, "new_col_3") # SSPM expect_class({ spm_boundaries(sspm_model) <- boundary_discrete spm_boundaries(sspm_model) }, "sspm_discrete_boundary") expect_class({ spm_datasets(sspm_model) <- list() spm_datasets(sspm_model) }, "list") expect_equal({ spm_time(sspm_model) <- "time_col" spm_time(sspm_model) }, "time_col") expect_equal({ spm_unique_ID(sspm_model) <- "ID" spm_unique_ID(sspm_model) }, "ID") expect_equal({ spm_smoothed_data(sspm_model) <- mtcars spm_smoothed_data(sspm_model) }, mtcars) expect_true({ is_split(sspm_model) <- TRUE is_split(sspm_model) }) # Method expect_match({ spm_name(discret_method) <- "New_Name" spm_name(discret_method) }, "New_Name") expect_function({ method_func(discret_method) <- rnorm method_func(discret_method) }) # Formula expect_match({ sspm:::format_formula(raw_formula(sspm_formula) <- as.formula(a ~ b)) }, "a ~ b") expect_match({ sspm:::format_formula(translated_formula(sspm_formula) <- as.formula(c ~ d)) }, "c ~ d") expect_names({ formula_vars(sspm_formula) <- list(a = 1, b = 2) names(formula_vars(sspm_formula)) }, identical.to = c("a", "b")) expect_match({ formula_type(sspm_formula) <- "my_type" formula_type(sspm_formula) }, "my_type") expect_match({ spm_lagged_vars(sspm_formula) <- "lag_vars" spm_lagged_vars(sspm_formula) }, "lag_vars") expect_match({ spm_response(sspm_formula) <- "response" spm_response(sspm_formula) }, "response") # Dataset expect_data_frame({ spm_data(biomass_dataset) <- mtcars spm_data(biomass_dataset) }) expect_equal({ spm_smoothed_data(biomass_dataset) <- mtcars spm_smoothed_data(biomass_dataset) }, mtcars) expect_match({ spm_name(biomass_dataset) <- "NewDatasetName_2" spm_name(biomass_dataset) }, "NewDatasetName_2") expect_match({ spm_coords_col(biomass_dataset) <- c("one_2", "two_2") spm_coords_col(biomass_dataset)[1] }, c("one_2")) expect_match({ spm_coords_col(biomass_dataset) <- c("one_2", "two_2") spm_coords_col(biomass_dataset)[2] }, c("two_2")) expect_match({ spm_unique_ID(biomass_dataset) <- "New_ID_2" spm_unique_ID(biomass_dataset) }, "New_ID_2") expect_match({ spm_time(biomass_dataset) <- "new_time_2" spm_time(biomass_dataset) }, "new_time_2") expect_equal({ gam_fit <- list(mgcv::gam(mtcars$mpg~mtcars$disp, family = gaussian)) spm_smoothed_fit(biomass_dataset_smoothed) <- gam_fit spm_smoothed_fit(biomass_dataset_smoothed) }, gam_fit) expect_equal({ spm_formulas(biomass_dataset_smoothed) <- list(sspm_formula) spm_formulas(biomass_dataset_smoothed) }, list(sspm_formula)) expect_equal({ spm_biomass_vars(catch_dataset) <- c("catch", "catch_replaced") spm_biomass_vars(catch_dataset) }, c("catch", "catch_replaced")) expect_equal({ spm_density_vars(biomass_dataset) <- c("weight_per_km2", "weight_per_km2_replaced") spm_density_vars(biomass_dataset) }, c("weight_per_km2", "weight_per_km2_replaced")) ## Fit expect_equal({ spm_unique_ID(sspm_fit) <- "uniqueID" spm_unique_ID(sspm_fit) }, "uniqueID") expect_equal({ spm_time(sspm_fit) <- "timevar" spm_time(sspm_fit) }, "timevar") expect_equal({ spm_formulas(sspm_fit) <- sspm_formula spm_formulas(sspm_fit) }, sspm_formula) expect_equal({ spm_get_fit(sspm_fit) <- fit_bam spm_get_fit(sspm_fit) }, fit_bam) expect_equal({ spm_boundaries(sspm_fit) <- spm_boundaries(biomass_dataset_smoothed) spm_boundaries(sspm_fit) }, spm_boundaries(biomass_dataset_smoothed)) expect_equal({ spm_boundary(sspm_fit) <- "sfa" spm_boundary(sspm_fit) }, "sfa") })