test_that("The function prcomp() works for QTS samples", { res_pca <- prcomp(vespa64$igp[1:16]) expect_snapshot(res_pca) }) test_that("Visualization code for PCA work", { res_pca <- prcomp(vespa64$igp[1:16]) p <- ggplot2::autoplot(res_pca, what = "PC1") expect_equal(dim(p$data), c(1212, 4)) p <- ggplot2::autoplot(res_pca, what = "scores") expect_equal(dim(p$data), c(16, 2)) p <- ggplot2::autoplot(res_pca, what = "variance") expect_equal(dim(p$data), c(5, 2)) }) test_that("Visualization functions for PCA work", { skip_if_not_installed("vdiffr") skip_on_covr() skip_on_ci() res_pca <- prcomp(vespa64$igp[1:16]) vdiffr::expect_doppelganger( title = "PC plot", fig = plot(res_pca, what = "PC1") ) vdiffr::expect_doppelganger( title = "Score plot", fig = plot(res_pca, what = "scores") ) p <- ggplot2::autoplot(res_pca, what = "scores") vdiffr::expect_doppelganger( title = "Colored score plot", fig = p + ggplot2::geom_point(ggplot2::aes(color = vespa64$V[1:16])) ) vdiffr::expect_doppelganger( title = "Screeplot", fig = plot(res_pca, what = "variance") ) })