context("plot") # find system info on_solaris <- Sys.info()[["sysname"]] == "SunOS" if (on_solaris) { test_that("on solaris", { expect_true(on_solaris) }) } else { NE_Lakes <- sp_frame(NE_Lakes) # set reproducible seed (as there are random components here) set.seed(5) #-------------------------------------- #-------- one sided formula #-------------------------------------- # one sided formulas test_that("one sided formulas work", { expect_error(sp_plot(NE_Lakes, formula = ~1), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, fix_bbox = FALSE), NA) expect_error(sp_plot(NE_Lakes, formula = ~ ELEV_CAT:AREA_CAT), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV), NA) }) # changing graphical parameters test_that("one sided formulas work", { expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, pch = 19), NA) var_args <- list(ELEV_CAT = list(main = "maintest")) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, var_args = var_args), NA) varlevel_args <- list(ELEV_CAT = list(levels = c("low", "high"), cex = c(1, NA))) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, varlevel_args = varlevel_args), NA) varlevel_args <- list(ELEV_CAT = list(levels = c("low", "high"), cex = c(1, 2))) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, varlevel_args = varlevel_args), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, varlevel_args = varlevel_args, var_args = var_args, pch = 19 ), NA) }) #-------------------------------------- #-------- two sided formula #-------------------------------------- # two sided formulas test_that("two sided formulas work", { expect_error(sp_plot(NE_Lakes, formula = ELEV ~ 1), NA) expect_error(sp_plot(NE_Lakes, formula = ELEV ~ AREA_CAT, onlyshow = "small"), NA) }) # changing graphical parameters test_that("two sided formulas work", { var_args <- list(AREA_CAT = list(ELEV_CAT = list(levels = c("low", "high"), pch = c(1, 19)))) expect_error(sp_plot(NE_Lakes, formula = ELEV_CAT ~ AREA_CAT, var_args = var_args, onlyshow = "large"), NA) }) ################################################# ########### sp_design ################################################# n_base <- 50 eqprob <- grts(NE_Lakes, n_base = n_base) eqprob_legacy <- grts(NE_Lakes, n_base = n_base, legacy_sites = NE_Lakes_Legacy) n_over <- 5 eqprob_rho <- grts(NE_Lakes, n_base = n_base, n_over = n_over) n_near <- 1 eqprob_nn <- grts(NE_Lakes, n_base = n_base, n_near = n_near) eqprob_both <- grts(NE_Lakes, n_base = n_base, n_over = n_over, n_near = n_near) n_base_strat <- c(low = 25, high = 25) eqprob_strat <- grts(NE_Lakes, n_base = n_base_strat, stratum_var = "ELEV_CAT") #-------------------------------------- #-------- without sframe #-------------------------------------- # test sp_plot works test_that("sp_plot works", { expect_error(sp_plot(eqprob, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_legacy, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_rho, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_nn, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_nn, formula = ~siteuse, siteuse = c("Base")), NA) expect_error(sp_plot(eqprob_strat, formula = siteuse ~ stratum, onlyshow = "low"), NA) }) # graphical paraemters test_that("sp_plot works", { var_args <- list(siteuse = list(main = "maintest")) varlevel_args <- list(siteuse = list(levels = c("Base", "Over"), pch = c(1, 19))) expect_error(sp_plot(eqprob_rho, formula = ~siteuse, varlevel_args = varlevel_args, var_args = var_args, cex = 0.5 ), NA) var_args <- list(ELEV_CAT = list(siteuse = list(levels = c("Base", "Over"), pch = c(1, 19)))) expect_error(sp_plot(eqprob_rho, formula = siteuse ~ ELEV_CAT, var_args = var_args, onlyshow = "low", cex = 0.5 ), NA) }) #-------------------------------------- #-------- with sframe #-------------------------------------- # test sp_plot works test_that("sp_plot works", { expect_error(sp_plot(eqprob, NE_Lakes, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_legacy, NE_Lakes, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_rho, NE_Lakes, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_nn, NE_Lakes, formula = ~siteuse), NA) expect_error(sp_plot(eqprob_nn, NE_Lakes, formula = ~siteuse, siteuse = c("Base")), NA) expect_error(sp_plot(eqprob_strat, NE_Lakes, formula = siteuse ~ ELEV_CAT, onlyshow = "low"), NA) }) # graphical parameters test_that("sp_plot works", { var_args <- list(siteuse = list(main = "maintest")) varlevel_args <- list(siteuse = list(levels = c("Base", "Over"), pch = c(1, 19))) expect_error(sp_plot(eqprob_rho, NE_Lakes, formula = ~siteuse, varlevel_args = varlevel_args, var_args = var_args, cex = 0.5 ), NA) var_args <- list(ELEV_CAT = list(siteuse = list(levels = c("Base"), pch = c(19)))) expect_error(sp_plot(eqprob_rho, NE_Lakes, formula = siteuse ~ ELEV_CAT, var_args = var_args, onlyshow = "low", siteuse = c("Base"), cex = 1 ), NA) }) #-------------------------------------- #-------- one sided formula #-------------------------------------- # one sided formulas test_that("one sided formulas work", { expect_error(sp_plot(NE_Lakes, formula = ~1), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, fix_bbox = FALSE), NA) expect_error(sp_plot(NE_Lakes, formula = ~ ELEV_CAT:AREA_CAT), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV), NA) }) # changing graphical parameters test_that("one sided formulas work", { expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, pch = 19), NA) var_args <- list(ELEV_CAT = list(main = "maintest")) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, var_args = var_args), NA) varlevel_args <- list(ELEV_CAT = list(levels = c("low", "high"), cex = c(1, NA))) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, varlevel_args = varlevel_args), NA) varlevel_args <- list(ELEV_CAT = list(levels = c("low", "high"), cex = c(1, 2))) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, varlevel_args = varlevel_args), NA) expect_error(sp_plot(NE_Lakes, formula = ~ELEV_CAT, varlevel_args = varlevel_args, var_args = var_args, pch = 19 ), NA) }) #-------------------------------------- #-------- two sided formula #-------------------------------------- # two sided formulas test_that("two sided formulas work", { expect_error(sp_plot(NE_Lakes, formula = ELEV ~ 1), NA) expect_error(sp_plot(NE_Lakes, formula = ELEV ~ AREA_CAT, onlyshow = "small"), NA) }) # changing graphical parameters test_that("two sided formulas work", { var_args <- list(AREA_CAT = list(ELEV_CAT = list(levels = c("low", "high"), pch = c(1, 19)))) expect_error(sp_plot(NE_Lakes, formula = ELEV_CAT ~ AREA_CAT, var_args = var_args, onlyshow = "large"), NA) }) ################################################# ########### sp_CDF ################################################# test_that("plot.sp_CDF works", { bmmi <- cont_analysis( NLA_PNW, vars = "BMMI", weight = "WEIGHT", siteID = "SITE_ID" ) expect_error(plot(bmmi$CDF), NA) }) test_that("plot.sp_CDF works subpop", { bmmi <- cont_analysis( NLA_PNW, vars = "BMMI", subpop = "PHOS_COND", weight = "WEIGHT", siteID = "SITE_ID" ) expect_error(plot(bmmi$CDF, subpop = "PHOS_COND", subpop_level = "Good"), NA) }) test_that("plot.sp_CDF works variables", { bmmi <- cont_analysis( NLA_PNW, vars = c("BMMI", "WEIGHT"), weight = "WEIGHT", siteID = "SITE_ID" ) expect_error(plot(bmmi$CDF, var = "BMMI"), NA) }) test_that("plot.sp_CDF works variables subpop", { bmmi <- cont_analysis( NLA_PNW, vars = c("BMMI", "WEIGHT"), subpop = "PHOS_COND", weight = "WEIGHT", siteID = "SITE_ID" ) expect_error(plot(bmmi$CDF, var = "BMMI", subpop = "PHOS_COND", subpop_level = "Good"), NA) }) }