* installing *source* package ‘speedytax’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 17.0.6 (3)’
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c copySM.cpp -o copySM.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fix_domain_C.cpp -o fix_domain_C.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fix_qiime2_domain_C.cpp -o fix_qiime2_domain_C.o
fix_qiime2_domain_C.cpp:8:9: warning: use of bitwise '|' with boolean operands [-Wbitwise-instead-of-logical]
    8 |     if ((sorted_data(i, 0) == "") | (sorted_data(i, 0) == "Unassigned")) {
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                   ||
fix_qiime2_domain_C.cpp:8:9: note: cast one or both operands to int to silence this warning
1 warning generated.
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fix_qiime2_rest_C.cpp -o fix_qiime2_rest_C.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c fix_rdp_rest_C.cpp -o fix_rdp_rest_C.o
clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o speedytax.so RcppExports.o copySM.o fix_domain_C.o fix_qiime2_domain_C.o fix_qiime2_rest_C.o fix_rdp_rest_C.o -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/speedytax.Rcheck/00LOCK-speedytax/00new/speedytax/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (speedytax)