data("jdsdata") data("efidata") test_that(desc = 'Succefully match and bound the datasets', code = { matchdf <- match_datasets(datasets = list(jds = jdsdata, efi=efidata), lats = 'lat', lons = 'lon', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site_ID')) expect_equal(nrow(matchdf), sum(nrow(jdsdata), nrow(efidata))) expect_gt(ncol(matchdf), 5) }) test_that(desc = 'Standard column for country is left NULL', code = { #country left out yet important expect_error(match_datasets(datasets = list(jds = jdsdata, efi = efidata), lats = 'lat', lons = 'lon', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date')))#country left }) test_that(desc = 'Datasets not provided in a list with names', code = {expect_error(match_datasets(datasets = c(jds = jdsdata, efi = efidata),#in vector not list lats = 'lat', lons = 'lon', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site_ID'))) }) test_that(desc = 'The names provided are not in the merged data', code = {expect_error( match_datasets(datasets = list(jdsdata, efidata), lats = 'lat1',#not found in any df lons = 'lon1', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site_ID')))}) test_that(desc = 'Dataset lists not provided or empty list', code = { expect_error(match_datasets(lats = 'lat',lons = 'lon', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site_ID'))) expect_error(match_datasets(datasets = list(jds= NULL, efi = NULL), lats = 'lat',lons = 'lon', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site_ID')))}) test_that(desc = "Latitudes, Longitudes, country, dates, species are wrong for JDSdata", code={ expect_error(match_datasets(datasets = list(jds = jdsdata, efi=efidata), lats = 'latitude',#instead of lat lons = 'lon', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site_ID'))) #Longitude expect_error(match_datasets(datasets = list(jds = jdsdata, efi=efidata), lats = 'lat', lons = 'longitude',#instead of lon species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site_ID'))) #country expect_error(match_datasets(datasets = list(jds = jdsdata, efi=efidata), lats = 'lat', lons = 'lon', species = c('speciesname','scientificName'), date = c('Date', 'sampling_date'), country = c('JDS4_site')))#'JDS4_site_ID' #species expect_error(match_datasets(datasets = list(jds = jdsdata, efi=efidata), lats = 'lat', lons = 'lon', species = c('spec','scientificName'),#speciesname date = c('Date', 'sampling_date'), country = c('JDS4_site_ID'))) #sampling date wrong expect_error(match_datasets(datasets = list(jds = jdsdata, efi=efidata), lats = 'lat', lons = 'lon', species = c('spec','scientificName'), date = c('Da', 'samplingate'),#sampling_date country = c('JDS4_site_ID'))) })