downloading reverse dependencies ... downloading alphahull_2.5.tar.gz ... ok downloading binspp_0.2.2.tar.gz ... ok downloading CRTspat_1.3.2.tar.gz ... ok downloading dbmss_2.10-0.tar.gz ... ok downloading divent_0.5-2.tar.gz ... ok downloading ecespa_1.1-18.tar.gz ... ok downloading ENMTools_1.1.2.tar.gz ... ok downloading ETAS_0.6.1.1.tar.gz ... ok downloading forestSAS_2.0.4.tar.gz ... ok downloading globalKinhom_0.1.10.tar.gz ... ok downloading groupedHyperframe.random_0.1.0.tar.gz ... ok downloading highriskzone_1.4.9.tar.gz ... ok downloading idar_1.6.tar.gz ... ok downloading irtpwr_1.0.3.tar.gz ... ok downloading kanova_0.3-17.tar.gz ... ok downloading kernstadapt_0.4.0.tar.gz ... ok downloading lacunaritycovariance_1.1-7.tar.gz ... ok downloading lsirm12pl_1.3.4.tar.gz ... ok downloading MetaLandSim_2.0.0.tar.gz ... ok downloading NTSS_0.1.3.tar.gz ... ok downloading onpoint_1.1.tar.gz ... ok downloading qlcVisualize_0.4.tar.gz ... ok downloading scSpatialSIM_0.1.3.4.tar.gz ... ok downloading selectspm_0.7.tar.gz ... ok downloading shar_2.3.1.tar.gz ... ok downloading smacpod_2.6.4.tar.gz ... ok downloading spacejamr_0.2.1.tar.gz ... ok downloading spagmix_0.4-2.tar.gz ... ok downloading sparr_2.3-16.tar.gz ... ok downloading sparrpowR_0.2.8.tar.gz ... ok downloading SpatEntropy_2.2-4.tar.gz ... ok downloading spatstat_3.3-2.tar.gz ... ok downloading spatstat.explore_3.4-2.tar.gz ... ok downloading spatstat.gui_3.1-0.tar.gz ... ok downloading spatstat.Knet_3.1-2.tar.gz ... ok downloading spatstat.linnet_3.2-5.tar.gz ... ok downloading spatstat.local_5.1-0.tar.gz ... ok downloading spatstat.model_3.3-5.tar.gz ... ok downloading spatsurv_2.0-1.tar.gz ... ok downloading SRTsim_0.99.7.tar.gz ... ok downloading stlnpp_0.4.0.tar.gz ... ok downloading stopp_0.2.4.tar.gz ... ok downloading stpp_2.0-8.tar.gz ... ok downloading swdpwr_1.11.tar.gz ... ok downloading ttbary_0.3-1.tar.gz ... ok downloading envi_1.0.0.tar.gz ... ok downloading GET_1.0-7.tar.gz ... ok downloading MetaNet_0.2.5.tar.gz ... ok downloading mobsim_0.3.2.tar.gz ... ok downloading pcds_0.1.8.tar.gz ... ok downloading secr_5.2.1.tar.gz ... ok downloading sf_1.0-21.tar.gz ... ok downloading spatstat.data_3.1-6.tar.gz ... ok downloading spatstat.geom_3.4-1.tar.gz ... ok installing dependencies ‘CalibratR’, ‘cartogramR’, ‘crsuggest’, ‘dashboardthemes’, ‘dbmss’, ‘Devore7’, ‘dixon’, ‘ecespa’, ‘ecospat’, ‘ENMeval’, ‘EntropyEstimation’, ‘fastshap’, ‘GET’, ‘gMOIP’, ‘groupedHyperframe’, ‘hypervolume’, ‘INLA’, ‘lingtypology’, ‘mapplots’, ‘OOR’, ‘pcutils’, ‘qlcMatrix’, ‘ResourceSelection’, ‘RStoolbox’, ‘sads’, ‘smerc’, ‘sparr’, ‘spatialTIME’, ‘spatstat.geom’, ‘spatstat.Knet’, ‘spatstat.random’, ‘spcosa’, ‘SPECIES’, ‘spsurvey’, ‘stlnpp’, ‘stpp’ Warning: package ‘INLA’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘rebird’, ‘rvertnet’, ‘ridigbio’, ‘spocc’, ‘BIEN’, ‘predicts’, ‘rangeModelMetadata’, ‘adehabitatHR’, ‘biomod2’, ‘poibin’, ‘cleancall’, ‘sparsesvd’, ‘leaflet.minicharts’, ‘moocore’ begin installing package ‘rebird’ begin installing package ‘rvertnet’ begin installing package ‘ridigbio’ begin installing package ‘BIEN’ begin installing package ‘predicts’ begin installing package ‘adehabitatHR’ begin installing package ‘biomod2’ begin installing package ‘poibin’ begin installing package ‘cleancall’ begin installing package ‘sparsesvd’ begin installing package ‘leaflet.minicharts’ begin installing package ‘moocore’ begin installing package ‘OOR’ begin installing package ‘EntropyEstimation’ begin installing package ‘SPECIES’ begin installing package ‘hypervolume’ begin installing package ‘CalibratR’ begin installing package ‘ResourceSelection’ begin installing package ‘fastshap’ begin installing package ‘Devore7’ begin installing package ‘GET’ begin installing package ‘mapplots’ begin installing package ‘smerc’ begin installing package ‘crsuggest’ begin installing package ‘dashboardthemes’ begin installing package ‘RStoolbox’ begin installing package ‘pcutils’ begin installing package ‘sads’ * installing *source* package ‘cleancall’ ... ** this is package ‘cleancall’ version ‘0.1.3’ ** package ‘cleancall’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuIGsFt/R.INSTALL3b28fa6ead2b0e/cleancall/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cleancall.c -o cleancall.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c test.c -o test.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cleancall.so cleancall.o init.o test.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuIGsFt/R.INSTALL3b28fa6ead2b0e/cleancall/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cleancall/00new/cleancall/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cleancall) begin installing package ‘spcosa’ * installing *source* package ‘dashboardthemes’ ... ** this is package ‘dashboardthemes’ version ‘1.1.6’ ** package ‘dashboardthemes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dashboardthemes) begin installing package ‘spsurvey’ * installing *source* package ‘poibin’ ... ** this is package ‘poibin’ version ‘1.6’ ** package ‘poibin’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYjKKJ9/R.INSTALL3b28e955f8b942/poibin/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dftcf.c -o dftcf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c poibin_init.c -o poibin_init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o poibin.so dftcf.o poibin_init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYjKKJ9/R.INSTALL3b28e955f8b942/poibin/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-poibin/00new/poibin/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (poibin) begin installing package ‘spatstat.geom’ * installing *source* package ‘OOR’ ... ** this is package ‘OOR’ version ‘0.1.4’ ** package ‘OOR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OOR) begin installing package ‘cartogramR’ * installing *source* package ‘ridigbio’ ... ** this is package ‘ridigbio’ version ‘0.4.1’ ** package ‘ridigbio’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ridigbio) * installing *source* package ‘mapplots’ ... ** this is package ‘mapplots’ version ‘1.5.2’ ** package ‘mapplots’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mapplots) * installing *source* package ‘EntropyEstimation’ ... ** this is package ‘EntropyEstimation’ version ‘1.2.1’ ** package ‘EntropyEstimation’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr0uMNX/R.INSTALL3b2915412b30db/EntropyEstimation/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c EntropEst.c -o EntropEst.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o EntropyEstimation.so EntropEst.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr0uMNX/R.INSTALL3b2915412b30db/EntropyEstimation/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-EntropyEstimation/00new/EntropyEstimation/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EntropyEstimation) * installing *source* package ‘leaflet.minicharts’ ... ** this is package ‘leaflet.minicharts’ version ‘0.6.2’ ** package ‘leaflet.minicharts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (leaflet.minicharts) begin installing package ‘lingtypology’ * installing *source* package ‘SPECIES’ ... ** this is package ‘SPECIES’ version ‘1.2.0’ ** package ‘SPECIES’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIXiyI5/R.INSTALL3b291d67d589a4/SPECIES/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c PPCG.f90 -o PPCG.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c WLunpmle.f90 -o WLunpmle.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c norrispollock.f90 -o norrispollock.o norrispollock.f90:108:80: 108 | like=like+lgam(SUM(n1(2:(t+1)))+n00+1)-lgam(n00+1)-lgam(SUM(n1(2:(t+1)))+1) | ^ Warning: ‘n00’ may be used uninitialized [-Wmaybe-uninitialized] norrispollock.f90:67:42: 67 | DOUBLE PRECISION like,tempprob,lgam,n00, untrunPmix | ^ note: ‘n00’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c pnpmle.f90 -o pnpmle.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c shared.f90 -o shared.o shared.f90:209:62: 209 | IF (lambda1==0 .OR. lambda1<0 .OR. lambda1>100 .OR. sum_b .EQ. 0.D0) THEN | ^ Warning: ‘sum_b’ may be used uninitialized [-Wmaybe-uninitialized] shared.f90:148:36: 148 | DOUBLE PRECISION n(50),sum_a,sum_b,Etol,z(t,noZeroP),d1,d2 | ^ note: ‘sum_b’ was declared here gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o SPECIES.so PPCG.o WLunpmle.o norrispollock.o pnpmle.o shared.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIXiyI5/R.INSTALL3b291d67d589a4/SPECIES/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-SPECIES/00new/SPECIES/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SPECIES) * installing *source* package ‘Devore7’ ... ** this is package ‘Devore7’ version ‘0.7.6’ ** package ‘Devore7’ successfully unpacked and MD5 sums checked ** using staged installation ** data *** moving datasets to lazyload DB ** inst ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Devore7) * installing *source* package ‘rebird’ ... ** this is package ‘rebird’ version ‘1.3.0’ ** package ‘rebird’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rebird) * installing *source* package ‘rvertnet’ ... ** this is package ‘rvertnet’ version ‘0.8.4’ ** package ‘rvertnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rvertnet) begin installing package ‘spocc’ * installing *source* package ‘ResourceSelection’ ... ** this is package ‘ResourceSelection’ version ‘0.3-6’ ** package ‘ResourceSelection’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ResourceSelection) * installing *source* package ‘sparsesvd’ ... ** this is package ‘sparsesvd’ version ‘0.2-2’ ** package ‘sparsesvd’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpUr3iBE/R.INSTALL3b290c5fa25b76/sparsesvd/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c las2.c -o las2.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c main.c -o main.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c svdlib.c -o svdlib.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c svdutil.c -o svdutil.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sparsesvd.so las2.o main.o svdlib.o svdutil.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpUr3iBE/R.INSTALL3b290c5fa25b76/sparsesvd/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sparsesvd/00new/sparsesvd/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparsesvd) begin installing package ‘qlcMatrix’ * installing *source* package ‘pcutils’ ... ** this is package ‘pcutils’ version ‘0.2.8’ ** package ‘pcutils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pcutils) * installing *source* package ‘GET’ ... ** this is package ‘GET’ version ‘1.0-7’ ** package ‘GET’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GET) * installing *source* package ‘lingtypology’ ... ** this is package ‘lingtypology’ version ‘1.1.20’ ** package ‘lingtypology’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lingtypology) * installing *source* package ‘CalibratR’ ... ** this is package ‘CalibratR’ version ‘0.1.2’ ** package ‘CalibratR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CalibratR) * installing *source* package ‘adehabitatHR’ ... ** this is package ‘adehabitatHR’ version ‘0.4.22’ ** package ‘adehabitatHR’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5NMILt/R.INSTALL3b28dd7c977baf/adehabitatHR/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tests.c -o tests.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o adehabitatHR.so init.o tests.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5NMILt/R.INSTALL3b28dd7c977baf/adehabitatHR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-adehabitatHR/00new/adehabitatHR/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (adehabitatHR) * installing *source* package ‘spcosa’ ... ** this is package ‘spcosa’ version ‘0.4-2’ ** package ‘spcosa’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spcosa) * installing *source* package ‘cartogramR’ ... ** this is package ‘cartogramR’ version ‘1.5-1’ ** package ‘cartogramR’ successfully unpacked and MD5 sums checked ** using staged installation *** checking if FFTW 3.3.10 is installed... yes *** checking if R installation supports sigaction... yes *** checking if R installation supports openMP: **** checking if R installation supports OpenMP with R flags... yes ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIcfs5o/R.INSTALL3b2bfdd53596e/cartogramR/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c caracmap.c -o caracmap.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cartogram.c -o cartogram.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cartogramR.c -o cartogramR.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c checkring.c -o checkring.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dcn.c -o dcn.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diff_integrate.c -o diff_integrate.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ffb_integrate.c -o ffb_integrate.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fill_with_density.c -o fill_with_density.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geomcarto.c -o geomcarto.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gridanalysis.c -o gridanalysis.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c inside_functions.c -o inside_functions.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c interpol2.c -o interpol2.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c invcarto.c -o invcarto.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iocartogramR.c -o iocartogramR.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c makegraticule.c -o makegraticule.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_SIGACTION=1 -I'/home/hornik/tmp/CRAN_recheck/Library/cleancall/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_gen.c -o read_gen.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o cartogramR.so caracmap.o cartogram.o cartogramR.o checkring.o dcn.o diff_integrate.o ffb_integrate.o fill_with_density.o geomcarto.o gridanalysis.o init.o inside_functions.o interpol2.o invcarto.o iocartogramR.o makegraticule.o read_gen.o -fopenmp -lfftw3 -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIcfs5o/R.INSTALL3b2bfdd53596e/cartogramR/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-cartogramR/00new/cartogramR/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cartogramR) * installing *source* package ‘qlcMatrix’ ... ** this is package ‘qlcMatrix’ version ‘0.9.8’ ** package ‘qlcMatrix’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** exec ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (qlcMatrix) * installing *source* package ‘spocc’ ... ** this is package ‘spocc’ version ‘1.2.3’ ** package ‘spocc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spocc) * installing *source* package ‘sads’ ... ** this is package ‘sads’ version ‘0.6.3’ ** package ‘sads’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpbqa12p/R.INSTALL3b29493231ebef/sads/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gauss_legendre.c -o gauss_legendre.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c volkov.c -o volkov.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o sads.so gauss_legendre.o init.o volkov.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpbqa12p/R.INSTALL3b29493231ebef/sads/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sads/00new/sads/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sads) * installing *source* package ‘moocore’ ... ** this is package ‘moocore’ version ‘0.1.6’ ** package ‘moocore’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hv_contrib.c -o libmoocore/hv_contrib.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/hv.c -o libmoocore/hv.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/pareto.c -o libmoocore/pareto.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/whv.c -o libmoocore/whv.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/whv_hype.c -o libmoocore/whv_hype.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/avl.c -o libmoocore/avl.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/eaf3d.c -o libmoocore/eaf3d.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/eaf.c -o libmoocore/eaf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/io.c -o libmoocore/io.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/rng.c -o libmoocore/rng.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c libmoocore/mt19937/mt19937.c -o libmoocore/mt19937/mt19937.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_PACKAGE -DDEBUG=0 -I./libmoocore/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rmoocore.c -o Rmoocore.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o moocore.so libmoocore/hv_contrib.o libmoocore/hv.o libmoocore/pareto.o libmoocore/whv.o libmoocore/whv_hype.o libmoocore/avl.o libmoocore/eaf3d.o libmoocore/eaf.o libmoocore/io.o libmoocore/rng.o libmoocore/mt19937/mt19937.o init.o Rmoocore.o -L/home/hornik/tmp/R/lib -lR make -C libmoocore all march=none CC="gcc-14 -std=gnu23" CFLAGS="-g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native " OPT_CFLAGS="" WARN_CFLAGS="" DEBUG=0 EXE= BINDIR=/home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/libmoocore' ---> Removing /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/dominatedsets <--- ---> Removing /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/eaf <--- ---> Removing /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/epsilon <--- ---> Removing /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/hv <--- ---> Removing /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/igd <--- ---> Removing /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/ndsort <--- ---> Removing /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/nondominated <--- ---> Removing object files: igd.o epsilon.o dominatedsets.o nondominated.o io.o ndsort.o hv_contrib.o hv.o pareto.o whv.o whv_hype.o eaf.o eafdiff.o eaf_main.o eaf3d.o avl.o cmdline.o libutil.o main-hv.o timer.o rng.o mt19937/mt19937.o <--- make default make[3]: Entering directory '/home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/libmoocore' gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o igd.o igd.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o epsilon.o epsilon.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o dominatedsets.o dominatedsets.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o nondominated.o nondominated.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o io.o io.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o ndsort.o ndsort.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hv_contrib.o hv_contrib.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o hv.o hv.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o pareto.o pareto.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o whv.o whv.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o whv_hype.o whv_hype.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o eaf.o eaf.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o eafdiff.o eafdiff.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o eaf_main.o eaf_main.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o eaf3d.o eaf3d.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o avl.o avl.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o cmdline.o cmdline.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o libutil.o libutil.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o main-hv.o main-hv.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o timer.o timer.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o rng.o rng.c gcc-14 -std=gnu23 -D_GNU_SOURCE -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c -o mt19937/mt19937.o mt19937/mt19937.c --> Building /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/dominatedsets version 0.15.1 <--- gcc-14 -std=gnu23 -o /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/dominatedsets dominatedsets.o cmdline.o io.o -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm --> Building /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/eaf version 0.15.1 <--- gcc-14 -std=gnu23 -o /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/eaf eaf.o eaf_main.o eaf3d.o avl.o cmdline.o io.o -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm --> Building /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/epsilon version 0.15.1 <--- gcc-14 -std=gnu23 -o /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/epsilon epsilon.o cmdline.o io.o -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm --> Building /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/hv version 0.15.1 <--- gcc-14 -std=gnu23 -o /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/hv main-hv.o timer.o hv.o cmdline.o io.o -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm --> Building /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/igd version 0.15.1 <--- gcc-14 -std=gnu23 -o /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/igd igd.o cmdline.o io.o -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm --> Building /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/ndsort version 0.15.1 <--- gcc-14 -std=gnu23 -o /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/ndsort ndsort.o pareto.o hv_contrib.c hv.o cmdline.o io.o -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm --> Building /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/nondominated version 0.15.1 <--- gcc-14 -std=gnu23 -o /home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/nondominated nondominated.o cmdline.o io.o -DDEBUG=0 -DVERSION='"0.15.1"' -DMARCH='"none"' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -lm make[3]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/libmoocore' make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src/libmoocore' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7T4gyZ/R.INSTALL3b290b301fc5c0/moocore/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-moocore/00new/moocore ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (moocore) begin installing package ‘gMOIP’ * installing *source* package ‘fastshap’ ... ** this is package ‘fastshap’ version ‘0.1.1’ ** package ‘fastshap’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpGQg0PP/R.INSTALL3b293537c9503a/fastshap/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_DONT_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DARMA_DONT_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -c fastshap.cpp -o fastshap.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fastshap.so RcppExports.o fastshap.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpGQg0PP/R.INSTALL3b293537c9503a/fastshap/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-fastshap/00new/fastshap/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastshap) * installing *source* package ‘BIEN’ ... ** this is package ‘BIEN’ version ‘1.2.7’ ** package ‘BIEN’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BIEN) begin installing package ‘rangeModelMetadata’ * installing *source* package ‘gMOIP’ ... ** this is package ‘gMOIP’ version ‘1.5.4’ ** package ‘gMOIP’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gMOIP) * installing *source* package ‘predicts’ ... ** this is package ‘predicts’ version ‘0.1-19’ ** package ‘predicts’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (predicts) * installing *source* package ‘spsurvey’ ... ** this is package ‘spsurvey’ version ‘5.5.1’ ** package ‘spsurvey’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spsurvey) * installing *source* package ‘smerc’ ... ** this is package ‘smerc’ version ‘1.8.4’ ** package ‘smerc’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpIeRWLS/R.INSTALL3b293cedca802/smerc/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_functions.cpp -o distance_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c noc_cpp.cpp -o noc_cpp.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c optimized_statistics.cpp -o optimized_statistics.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppProgress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c scsg2_cpp.cpp -o scsg2_cpp.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o smerc.so RcppExports.o distance_functions.o noc_cpp.o optimized_statistics.o scsg2_cpp.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpIeRWLS/R.INSTALL3b293cedca802/smerc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-smerc/00new/smerc/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (smerc) * installing *source* package ‘crsuggest’ ... ** this is package ‘crsuggest’ version ‘0.4’ ** package ‘crsuggest’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crsuggest) * installing *source* package ‘biomod2’ ... ** this is package ‘biomod2’ version ‘4.2-6-2’ ** package ‘biomod2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Checking Models arguments... ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package can be loaded from final location Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘mda’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘gam’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘earth’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘maxnet’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘randomForest’ Warning in library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called ‘xgboost’ ** testing if installed package keeps a record of temporary installation path * DONE (biomod2) begin installing package ‘ecospat’ * installing *source* package ‘rangeModelMetadata’ ... ** this is package ‘rangeModelMetadata’ version ‘0.1.5’ ** package ‘rangeModelMetadata’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rangeModelMetadata) begin installing package ‘ENMeval’ * installing *source* package ‘ecospat’ ... ** this is package ‘ecospat’ version ‘4.1.2’ ** package ‘ecospat’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecospat) * installing *source* package ‘spatstat.geom’ ... ** this is package ‘spatstat.geom’ version ‘3.4-1’ ** package ‘spatstat.geom’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYNFI1V/R.INSTALL3b2be4d7c9975/spatstat.geom/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c areadiff.c -o areadiff.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c auctionbf.c -o auctionbf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bdrymask.c -o bdrymask.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c close3pair.c -o close3pair.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c closepair.c -o closepair.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connectgraph.c -o connectgraph.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c connectpix.c -o connectpix.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dinfty.c -o dinfty.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c discarea.c -o discarea.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c discs.c -o discs.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dist2dpath.c -o dist2dpath.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distan3.c -o distan3.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distances.c -o distances.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c distmapbin.c -o distmapbin.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dwpure.c -o dwpure.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exactPdist.c -o exactPdist.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c exactdist.c -o exactdist.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fardist.c -o fardist.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hasclose.c -o hasclose.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c knndistance.c -o knndistance.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c knngrid.c -o knngrid.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c loccum.c -o loccum.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c metricPdist.c -o metricPdist.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c minnnd.c -o minnnd.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nearestpix.c -o nearestpix.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nn3Ddist.c -o nn3Ddist.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nnMDdist.c -o nnMDdist.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nndistance.c -o nndistance.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nngrid.c -o nngrid.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c periodic.c -o periodic.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c poly2im.c -o poly2im.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c quasirandom.c -o quasirandom.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c raster.c -o raster.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rasterfilter.c -o rasterfilter.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c scan.c -o scan.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c seg2pix.c -o seg2pix.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c trigraf.c -o trigraf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c uniquemap.c -o uniquemap.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c veegraf.c -o veegraf.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xyseg.c -o xyseg.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o spatstat.geom.so areadiff.o auctionbf.o bdrymask.o close3pair.o closepair.o connectgraph.o connectpix.o dinfty.o discarea.o discs.o dist2dpath.o distan3.o distances.o distmapbin.o dwpure.o exactPdist.o exactdist.o fardist.o hasclose.o init.o knndistance.o knngrid.o loccum.o metricPdist.o minnnd.o nearestpix.o nn3Ddist.o nnMDdist.o nndistance.o nngrid.o periodic.o poly2im.o quasirandom.o raster.o rasterfilter.o scan.o seg2pix.o trigraf.o uniquemap.o veegraf.o xyseg.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYNFI1V/R.INSTALL3b2be4d7c9975/spatstat.geom/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spatstat.geom/00new/spatstat.geom/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.geom) begin installing package ‘spatstat.random’ * installing *source* package ‘hypervolume’ ... ** this is package ‘hypervolume’ version ‘3.1.5’ ** package ‘hypervolume’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp80I81w/R.INSTALL3b292fe37c2f3/hypervolume/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c convert.cpp -o convert.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/progress/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fastPdist2.cpp -o fastPdist2.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o hypervolume.so RcppExports.o convert.o fastPdist2.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp80I81w/R.INSTALL3b292fe37c2f3/hypervolume/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-hypervolume/00new/hypervolume/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hypervolume) * installing *source* package ‘ENMeval’ ... ** this is package ‘ENMeval’ version ‘2.0.5.2’ ** package ‘ENMeval’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ENMeval) * installing *source* package ‘spatstat.random’ ... ** this is package ‘spatstat.random’ version ‘3.4-1’ ** package ‘spatstat.random’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6wMfyO/R.INSTALL3b35d576681802/spatstat.random/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Perfect.cc -o Perfect.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c areaint.c -o areaint.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c badgey.c -o badgey.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dgs.c -o dgs.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diggra.c -o diggra.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dist2.c -o dist2.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fiksel.c -o fiksel.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getcif.c -o getcif.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c geyer.c -o geyer.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c hardcore.c -o hardcore.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lennard.c -o lennard.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lookup.c -o lookup.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c methas.c -o methas.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mhsnoop.c -o mhsnoop.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c multihard.c -o multihard.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c penttinen.c -o penttinen.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rcauchy.c -o rcauchy.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmatclus.c -o rmatclus.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rthin.c -o rthin.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rthomas.c -o rthomas.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rtruncpois.c -o rtruncpois.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sftcr.c -o sftcr.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c straush.c -o straush.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c straushm.c -o straushm.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strauss.c -o strauss.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c straussm.c -o straussm.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c triplets.c -o triplets.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o spatstat.random.so Perfect.o areaint.o badgey.o dgs.o diggra.o dist2.o fiksel.o getcif.o geyer.o hardcore.o init.o lennard.o lookup.o methas.o mhsnoop.o multihard.o penttinen.o rcauchy.o rmatclus.o rthin.o rthomas.o rtruncpois.o sftcr.o straush.o straushm.o strauss.o straussm.o triplets.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6wMfyO/R.INSTALL3b35d576681802/spatstat.random/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spatstat.random/00new/spatstat.random/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.random) begin installing package ‘dixon’ begin installing package ‘groupedHyperframe’ begin installing package ‘dbmss’ begin installing package ‘ecespa’ begin installing package ‘sparr’ begin installing package ‘stlnpp’ begin installing package ‘stpp’ begin installing package ‘spatstat.Knet’ * installing *source* package ‘stlnpp’ ... ** this is package ‘stlnpp’ version ‘0.4.0’ ** package ‘stlnpp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stlnpp) * installing *source* package ‘spatstat.Knet’ ... ** this is package ‘spatstat.Knet’ version ‘3.1-2’ ** package ‘spatstat.Knet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp6F3rOE/R.INSTALL3b36ec61f34fa9/spatstat.Knet/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Knet.c -o Knet.o In file included from Knet.c:27: netKcode.h: In function ‘extended_sh_path_tree_restricted’: netKcode.h:1932:20: warning: ‘brk_pt2’ may be used uninitialized [-Wmaybe-uninitialized] 1932 | FN(break_crash_list_into_one_list)(&(brk_pt2->crashList), | ^ netKcode.h:24:18: note: in definition of macro ‘FN’ 24 | #define FN(BASE) BASE | ^~~~ netKcode.h:1763:24: note: ‘brk_pt2’ was declared here 1763 | *brk_pt1,*brk_pt2,*brk_pt, | ^~~~~~~ netKcode.h: In function ‘restricted_shortest_v2’: netKcode.h:2142:33: warning: ‘adjlist’ may be used uninitialized [-Wmaybe-uninitialized] 2142 | if(((PathVertex *)(adjlist->vertex))->d > Rmax){break;} | ~~~~~~~~^~~~~~~~~ netKcode.h:2052:32: note: ‘adjlist’ was declared here 2052 | AdjList *adjlist; | ^~~~~~~ netKcode.h: In function ‘spTree_restricted_v1’: netKcode.h:2432:19: warning: ‘adjlist’ may be used uninitialized [-Wmaybe-uninitialized] 2432 | for (member = list_head(&adjlist->adjacent); member != NULL; netKcode.h:2342:27: note: ‘adjlist’ was declared here 2342 | AdjList *adjlist; | ^~~~~~~ netKcode.h:2453:19: warning: ‘pth_vertex2’ may be used uninitialized [-Wmaybe-uninitialized] 2453 | retval = OK(graph_ins_edge)(graphTree, pth_vertex2, adj_node); | ^ netKcode.h:35:18: note: in definition of macro ‘OK’ 35 | #define OK(BASE) BASE | ^~~~ netKcode.h:2352:27: note: ‘pth_vertex2’ was declared here 2352 | *pth_vertex2, | ^~~~~~~~~~~ netKcode.h:2443:36: warning: ‘adj_vertex’ may be used uninitialized [-Wmaybe-uninitialized] 2443 | adj_node->edgeID = adj_vertex->edgeID; | ~~~~~~~~~~^~~~~~~~ netKcode.h:2354:27: note: ‘adj_vertex’ was declared here 2354 | *adj_vertex; | ^~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c KnetInhom.c -o KnetInhom.o In file included from KnetInhom.c:31: netKcode.h: In function ‘I_extended_sh_path_tree_restricted’: netKcode.h:32:18: warning: ‘brk_pt2’ may be used uninitialized [-Wmaybe-uninitialized] 32 | #define FN(BASE) I_ ## BASE | ^ netKcode.h:1932:17: note: in expansion of macro ‘FN’ 1932 | FN(break_crash_list_into_one_list)(&(brk_pt2->crashList), | ^~ netKcode.h:1763:24: note: ‘brk_pt2’ was declared here 1763 | *brk_pt1,*brk_pt2,*brk_pt, | ^~~~~~~ netKcode.h: In function ‘I_restricted_shortest_v2’: netKcode.h:2142:33: warning: ‘adjlist’ may be used uninitialized [-Wmaybe-uninitialized] 2142 | if(((PathVertex *)(adjlist->vertex))->d > Rmax){break;} | ~~~~~~~~^~~~~~~~~ netKcode.h:2052:32: note: ‘adjlist’ was declared here 2052 | AdjList *adjlist; | ^~~~~~~ netKcode.h: In function ‘I_spTree_restricted_v1’: netKcode.h:2432:19: warning: ‘adjlist’ may be used uninitialized [-Wmaybe-uninitialized] 2432 | for (member = list_head(&adjlist->adjacent); member != NULL; netKcode.h:2342:27: note: ‘adjlist’ was declared here 2342 | AdjList *adjlist; | ^~~~~~~ netKcode.h:2453:19: warning: ‘pth_vertex2’ may be used uninitialized [-Wmaybe-uninitialized] 2453 | retval = OK(graph_ins_edge)(graphTree, pth_vertex2, adj_node); | ^ netKcode.h:35:18: note: in definition of macro ‘OK’ 35 | #define OK(BASE) BASE | ^~~~ netKcode.h:2352:27: note: ‘pth_vertex2’ was declared here 2352 | *pth_vertex2, | ^~~~~~~~~~~ netKcode.h:2443:36: warning: ‘adj_vertex’ may be used uninitialized [-Wmaybe-uninitialized] 2443 | adj_node->edgeID = adj_vertex->edgeID; | ~~~~~~~~~~^~~~~~~~ netKcode.h:2354:27: note: ‘adj_vertex’ was declared here 2354 | *adj_vertex; | ^~~~~~~~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c netbase.c -o netbase.o netbase.c: In function ‘delete_vertex_from_graph’: netbase.c:1158:9: warning: ‘adjlist’ may be used uninitialized [-Wmaybe-uninitialized] 1158 | member=list_head(&adjlist->adjacent); netbase.c:1143:20: note: ‘adjlist’ was declared here 1143 | AdjList *adjlist; | ^~~~~~~ netbase.c:1156:22: warning: ‘pth_vertex’ may be used uninitialized [-Wmaybe-uninitialized] 1156 | void *data1; data1 = pth_vertex; | ~~~~~~^~~~~~~~~~~~ netbase.c:1144:20: note: ‘pth_vertex’ was declared here 1144 | PathVertex *pth_vertex,*adj_vertex; | ^~~~~~~~~~ gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o spatstat.Knet.so Knet.o KnetInhom.o init.o netbase.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp6F3rOE/R.INSTALL3b36ec61f34fa9/spatstat.Knet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spatstat.Knet/00new/spatstat.Knet/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatstat.Knet) * installing *source* package ‘dixon’ ... ** this is package ‘dixon’ version ‘0.0-10’ ** package ‘dixon’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpHHoMzd/R.INSTALL3b36de2450367f/dixon/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c dixonloop.f -o dixonloop.o f951: Warning: Nonconforming tab character in column 1 of line 117 [-Wtabs] gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dixon.so dixonloop.o init.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpHHoMzd/R.INSTALL3b36de2450367f/dixon/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dixon/00new/dixon/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dixon) begin installing package ‘spatialTIME’ * installing *source* package ‘ecespa’ ... ** this is package ‘ecespa’ version ‘1.1-18’ ** package ‘ecespa’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEENsLu/R.INSTALL3b36e819cb5388/ecespa/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c syrjalala.f -o syrjalala.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c wrp.c -o wrp.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ecespa.so init.o syrjalala.o wrp.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEENsLu/R.INSTALL3b36e819cb5388/ecespa/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ecespa/00new/ecespa/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecespa) * installing *source* package ‘groupedHyperframe’ ... ** this is package ‘groupedHyperframe’ version ‘0.2.1’ ** package ‘groupedHyperframe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (groupedHyperframe) * installing *source* package ‘sparr’ ... ** this is package ‘sparr’ version ‘2.3-16’ ** package ‘sparr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparr) * installing *source* package ‘spatialTIME’ ... ** this is package ‘spatialTIME’ version ‘1.3.4-5’ ** package ‘spatialTIME’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spatialTIME) * installing *source* package ‘RStoolbox’ ... ** this is package ‘RStoolbox’ version ‘1.0.2.1’ ** package ‘RStoolbox’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjXlg5k/R.INSTALL3b29451a7df598/RStoolbox/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c classQA.cpp -o classQA.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c entropy.cpp -o entropy.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gainOffsetRescale.cpp -o gainOffsetRescale.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c memory.cpp -o memory.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c nnls_solver.cpp -o nnls_solver.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c normImage.cpp -o normImage.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c oneHot.cpp -o oneHot.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictKmeans.cpp -o predictKmeans.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c predictMlc.cpp -o predictMlc.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pwSimilarity.cpp -o pwSimilarity.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rescaleImage.cpp -o rescaleImage.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c sam.cpp -o sam.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c spectralIndices.cpp -o spectralIndices.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RStoolbox.so RcppExports.o classQA.o entropy.o gainOffsetRescale.o init.o memory.o nnls_solver.o normImage.o oneHot.o predictKmeans.o predictMlc.o pwSimilarity.o rescaleImage.o sam.o spectralIndices.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjXlg5k/R.INSTALL3b29451a7df598/RStoolbox/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RStoolbox/00new/RStoolbox/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RStoolbox) * installing *source* package ‘dbmss’ ... ** this is package ‘dbmss’ version ‘2.10-0’ ** package ‘dbmss’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpY3rpYq/R.INSTALL3b36e47f2f83e0/dbmss/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CountNbd.cpp -o CountNbd.o In file included from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb.h:32, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel/TBB.h:10, from /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/RcppParallel.h:24, from CountNbd.cpp:137: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = long unsigned int]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/tbb_thread.h:251:29: required from here 251 | return as_atomic(location.my_id).compare_and_swap(value.my_id, comparand.my_id); | ~~~~~~~~~^~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘long unsigned int’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(long unsigned int)’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h: In instantiation of ‘tbb::atomic& tbb::internal::as_atomic(T&) [with T = tbb::interface5::internal::hash_map_base::bucket*]’: /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/concurrent_hash_map.h:291:31: required from here 291 | && as_atomic(my_table[new_seg]).compare_and_swap(is_allocating, NULL) == NULL ) | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include/tbb/atomic.h:544:12: warning: casting ‘tbb::interface5::internal::hash_map_base::bucket*’ to ‘tbb::atomic&’ does not use ‘constexpr tbb::atomic::atomic(T*) [with T = tbb::interface5::internal::hash_map_base::bucket]’ [-Wcast-user-defined] 544 | return (atomic&)t; | ^~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o dbmss.so CountNbd.o RcppExports.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpY3rpYq/R.INSTALL3b36e47f2f83e0/dbmss/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-dbmss/00new/dbmss/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (dbmss) * installing *source* package ‘stpp’ ... ** this is package ‘stpp’ version ‘2.0-8’ ** package ‘stpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDUXXBg/R.INSTALL3b36ea3b3c1acb/stpp/src' gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c astk.f -o astk.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c circ.f -o circ.o circ.f:828:72: 828 | CONV(I) = DBLE(I) | 1 Warning: Obsolescent feature: Statement function at (1) circ.f:332:72: 332 | if(p2.eq.2) res = psit**(-p6) * cauchy(x/psit,p1) | ^ Warning: ‘psit’ may be used uninitialized [-Wmaybe-uninitialized] circ.f:310:27: 310 | double precision psit,res | ^ note: ‘psit’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c covst.f -o covst.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c gspcore.f -o gspcore.o gspcore.f:37:17: 37 | if (kerns.ne.0d0) then | ^ Warning: ‘kerns’ may be used uninitialized [-Wmaybe-uninitialized] gspcore.f:12:40: 12 | double precision wij,vij,hs,kerns,gspm,gspn,gsps,x,y,txy | ^ note: ‘kerns’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c gspcoreinh.f -o gspcoreinh.o gspcoreinh.f:41:10: 41 | if (kerns.ne.0d0) then | ^ Warning: ‘kerns’ may be used uninitialized [-Wmaybe-uninitialized] gspcoreinh.f:13:45: 13 | double precision inhwij,inhvij,hs,kerns,gspminh,gspninh,gsps | ^ note: ‘kerns’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c gtecore.f -o gtecore.o gtecore.f:37:17: 37 | if (kernt.ne.0d0) then | ^ Warning: ‘kernt’ may be used uninitialized [-Wmaybe-uninitialized] gtecore.f:12:40: 12 | double precision wij,vij,ht,kernt,gtem,gten,gtet,x,y,txy | ^ note: ‘kernt’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c gtecoreinh.f -o gtecoreinh.o gtecoreinh.f:41:10: 41 | if (kernt.ne.0d0) then | ^ Warning: ‘kernt’ may be used uninitialized [-Wmaybe-uninitialized] gtecoreinh.f:13:45: 13 | double precision inhwij,inhvij,ht,kernt,gteminh,gteninh,gtet | ^ note: ‘kernt’ was declared here gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c klistafunction.f -o klistafunction.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmmrcore.f -o kmmrcore.o kmmrcore.f:37:17: 37 | if (kerns.ne.0d0) then | ^ Warning: ‘kerns’ may be used uninitialized [-Wmaybe-uninitialized] kmmrcore.f:12:40: 12 | double precision wij,vij,hs,kerns,krm,krn,kmmr,x,y,txy | ^ note: ‘kerns’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmmrcoreinh.f -o kmmrcoreinh.o kmmrcoreinh.f:41:10: 41 | if (kerns.ne.0d0) then | ^ Warning: ‘kerns’ may be used uninitialized [-Wmaybe-uninitialized] kmmrcoreinh.f:13:45: 13 | double precision inhwij,inhvij,hs,kerns,kmrminh,kmrninh,kmmr | ^ note: ‘kerns’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmmtcore.f -o kmmtcore.o kmmtcore.f:34:17: 34 | if (kernt.ne.0d0) then | ^ Warning: ‘kernt’ may be used uninitialized [-Wmaybe-uninitialized] kmmtcore.f:12:40: 12 | double precision wij,vij,ht,kernt,ktm,ktn,kmmt,snorm,txy | ^ note: ‘kernt’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmmtcoreinh.f -o kmmtcoreinh.o kmmtcoreinh.f:38:10: 38 | if (kernt.ne.0d0) then | ^ Warning: ‘kernt’ may be used uninitialized [-Wmaybe-uninitialized] kmmtcoreinh.f:13:45: 13 | double precision inhwij,inhvij,ht,kernt,kmtminh,kmtninh,kmmt | ^ note: ‘kernt’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmrcore.f -o kmrcore.o kmrcore.f:37:17: 37 | if (kerns.ne.0d0) then | ^ Warning: ‘kerns’ may be used uninitialized [-Wmaybe-uninitialized] kmrcore.f:12:40: 12 | double precision wij,vij,hs,kerns,krm,krn,kmr,x,y,txy | ^ note: ‘kerns’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmrcoreinh.f -o kmrcoreinh.o kmrcoreinh.f:41:10: 41 | if (kerns.ne.0d0) then | ^ Warning: ‘kerns’ may be used uninitialized [-Wmaybe-uninitialized] kmrcoreinh.f:13:45: 13 | double precision inhwij,inhvij,hs,kerns,kmrminh,kmrninh,kmr | ^ note: ‘kerns’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmtcore.f -o kmtcore.o kmtcore.f:34:17: 34 | if (kernt.ne.0d0) then | ^ Warning: ‘kernt’ may be used uninitialized [-Wmaybe-uninitialized] kmtcore.f:12:40: 12 | double precision wij,vij,ht,kernt,ktm,ktn,kmt,snorm,txy | ^ note: ‘kernt’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c kmtcoreinh.f -o kmtcoreinh.o kmtcoreinh.f:38:10: 38 | if (kernt.ne.0d0) then | ^ Warning: ‘kernt’ may be used uninitialized [-Wmaybe-uninitialized] kmtcoreinh.f:13:45: 13 | double precision inhwij,inhvij,ht,kernt,kmtminh,kmtninh,kmt | ^ note: ‘kernt’ was declared here gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c listafunction.f -o listafunction.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c pcffunction.f -o pcffunction.o gfortran-14 -fpic -g -O2 -Wall -pedantic -mtune=native -c stikfunction.f -o stikfunction.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o stpp.so astk.o circ.o covst.o gspcore.o gspcoreinh.o gtecore.o gtecoreinh.o init.o klistafunction.o kmmrcore.o kmmrcoreinh.o kmmtcore.o kmmtcoreinh.o kmrcore.o kmrcoreinh.o kmtcore.o kmtcoreinh.o listafunction.o pcffunction.o stikfunction.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDUXXBg/R.INSTALL3b36ea3b3c1acb/stpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stpp/00new/stpp/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stpp) checking spatstat.random_3.4-1.tar.gz ... checking alphahull_2.5.tar.gz ... checking binspp_0.2.2.tar.gz ... checking CRTspat_1.3.2.tar.gz ... checking dbmss_2.10-0.tar.gz ... checking divent_0.5-2.tar.gz ... checking ecespa_1.1-18.tar.gz ... checking ENMTools_1.1.2.tar.gz ... checking ETAS_0.6.1.1.tar.gz ... checking forestSAS_2.0.4.tar.gz ... checking globalKinhom_0.1.10.tar.gz ... checking groupedHyperframe.random_0.1.0.tar.gz ... checking highriskzone_1.4.9.tar.gz ... checking idar_1.6.tar.gz ... checking irtpwr_1.0.3.tar.gz ... checking kanova_0.3-17.tar.gz ... checking kernstadapt_0.4.0.tar.gz ... checking lacunaritycovariance_1.1-7.tar.gz ... checking lsirm12pl_1.3.4.tar.gz ... checking MetaLandSim_2.0.0.tar.gz ... checking NTSS_0.1.3.tar.gz ... checking onpoint_1.1.tar.gz ... checking qlcVisualize_0.4.tar.gz ... checking scSpatialSIM_0.1.3.4.tar.gz ... checking selectspm_0.7.tar.gz ... checking shar_2.3.1.tar.gz ... checking smacpod_2.6.4.tar.gz ... checking spacejamr_0.2.1.tar.gz ... checking spatstat.local_5.1-0.tar.gz ... checking mobsim_0.3.2.tar.gz ... checking sf_1.0-21.tar.gz ... checking spatsurv_2.0-1.tar.gz ... checking stpp_2.0-8.tar.gz ... checking spatstat.model_3.3-5.tar.gz ... checking spatstat.geom_3.4-1.tar.gz ... checking stlnpp_0.4.0.tar.gz ... checking spatstat.linnet_3.2-5.tar.gz ... checking SpatEntropy_2.2-4.tar.gz ... checking SRTsim_0.99.7.tar.gz ... checking sparr_2.3-16.tar.gz ... checking spatstat.gui_3.1-0.tar.gz ... checking swdpwr_1.11.tar.gz ... checking MetaNet_0.2.5.tar.gz ... checking ttbary_0.3-1.tar.gz ... checking spatstat_3.3-2.tar.gz ... checking spagmix_0.4-2.tar.gz ... checking sparrpowR_0.2.8.tar.gz ... checking stopp_0.2.4.tar.gz ... checking spatstat.data_3.1-6.tar.gz ... checking spatstat.explore_3.4-2.tar.gz ... checking pcds_0.1.8.tar.gz ... checking GET_1.0-7.tar.gz ... checking envi_1.0.0.tar.gz ... checking secr_5.2.1.tar.gz ... checking spatstat.Knet_3.1-2.tar.gz ... Depends: Package: spatstat.random Depends: R (>= 3.5.0), spatstat.data (>= 3.1), spatstat.univar (>= 3.1), spatstat.geom (>= 3.3-6), stats, utils, methods, grDevices Imports: spatstat.utils (>= 3.1-4) Timings: user system elapsed spatstat.random 160.345 9.516 173.938 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 8 46 Check results summary: spatstat.random ... OK rdepends_alphahull ... OK rdepends_binspp ... OK rdepends_CRTspat ... OK rdepends_dbmss ... OK rdepends_divent ... OK rdepends_ecespa ... OK rdepends_ENMTools ... OK rdepends_envi ... OK rdepends_ETAS ... NOTE * checking Rd cross-references ... NOTE rdepends_forestSAS ... OK rdepends_GET ... OK rdepends_globalKinhom ... OK rdepends_groupedHyperframe.random ... OK rdepends_highriskzone ... OK rdepends_idar ... OK rdepends_irtpwr ... NOTE * checking DESCRIPTION meta-information ... NOTE rdepends_kanova ... OK rdepends_kernstadapt ... OK rdepends_lacunaritycovariance ... NOTE * checking Rd cross-references ... NOTE rdepends_lsirm12pl ... OK rdepends_MetaLandSim ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_MetaNet ... OK rdepends_mobsim ... OK rdepends_NTSS ... OK rdepends_onpoint ... OK rdepends_pcds ... OK rdepends_qlcVisualize ... OK rdepends_scSpatialSIM ... OK rdepends_secr ... OK rdepends_selectspm ... OK rdepends_sf ... OK rdepends_shar ... OK rdepends_smacpod ... OK rdepends_spacejamr ... OK rdepends_spagmix ... OK rdepends_sparr ... OK rdepends_sparrpowR ... NOTE * checking Rd cross-references ... NOTE rdepends_SpatEntropy ... OK rdepends_spatstat.data ... OK rdepends_spatstat.explore ... OK rdepends_spatstat.geom ... OK rdepends_spatstat.gui ... OK rdepends_spatstat.Knet ... OK rdepends_spatstat.linnet ... OK rdepends_spatstat.local ... OK rdepends_spatstat.model ... OK rdepends_spatstat ... OK rdepends_spatsurv ... OK rdepends_SRTsim ... OK rdepends_stlnpp ... NOTE * checking Rd cross-references ... NOTE rdepends_stopp ... NOTE * checking DESCRIPTION meta-information ... NOTE * checking Rd cross-references ... NOTE rdepends_stpp ... OK rdepends_swdpwr ... OK rdepends_ttbary ... NOTE * checking Rd cross-references ... NOTE Check results changes: Package: alphahull Check: CRAN incoming feasibility Old result: NOTE Package: highriskzone Check: CRAN incoming feasibility Old result: NOTE Package: lacunaritycovariance Check: CRAN incoming feasibility Old result: NOTE Package: MetaLandSim Check: CRAN incoming feasibility Old result: NOTE Package: SpatEntropy Check: CRAN incoming feasibility Old result: NOTE Package: spatsurv Check: CRAN incoming feasibility Old result: NOTE Package: stpp Check: CRAN incoming feasibility Old result: NOTE