Package: mascarade
Check: examples
New result: ERROR
  Running examples in ‘mascarade-Ex.R’ failed
  The error most likely occurred in:
  
  > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
  > ### Name: generateMaskSeurat
  > ### Title: Generates mask from a Seurat object. Requires 'SeuratObject'
  > ###   package.
  > ### Aliases: generateMaskSeurat
  > 
  > ### ** Examples
  > 
  > # only run if Seurat is installed
  > if (require("Seurat")) {
  +     data("pbmc_small")
  +     maskTable <- generateMaskSeurat(pbmc_small)
  + 
  +     library(ggplot2)
  +     # not the best plot, see vignettes for better examples
  +     DimPlot(pbmc_small) +
  +         geom_path(data=maskTable, aes(x=tSNE_1, y=tSNE_2, group=group))
  + }
  Loading required package: Seurat
  Loading required package: SeuratObject
  Loading required package: sp
  
  Attaching package: ‘SeuratObject’
  
  The following objects are masked from ‘package:base’:
  
      intersect, t
  
  Warning in erodemask(w, r, strict = strict) : eroded mask is empty
  Warning in erodemask(w, r, strict = strict) : eroded mask is empty
  Warning in erodemask(w, r, strict = strict) : eroded mask is empty
  Warning in FUN(X[[i]], ...) : Mask is empty for cluster 0
  Warning in FUN(X[[i]], ...) : Mask is empty for cluster 2
  Warning in FUN(X[[i]], ...) : Mask is empty for cluster 1
  Error in setnames(borderTable, c("x", "y"), colnames(dims)) : 
    Items of 'old' not found in column names: [x, y]. Consider skip_absent=TRUE.
  Calls: generateMaskSeurat ... generateMask -> setnames -> stopf -> raise_condition -> signal
  Execution halted
  Examples with CPU (user + system) or elapsed time > 5s
             user system elapsed
  fancyMask 5.075  0.156   5.231

Package: spatstat.random
Check: compiled code
Old result: NOTE
  File ‘spatstat.random/libs/spatstat.random.so’:
    Found non-API call to R: ‘Rf_findVar’
  
  Compiled code should not call non-API entry points in R.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
  and section ‘Moving into C API compliance’ for issues with the use of
  non-API entry points.
New result: WARNING
  File ‘spatstat.random/libs/spatstat.random.so’:
    Found non-API call to R: ‘Rf_findVar’
  This entry point may be removed soon.
  
  Compiled code should not call non-API entry points in R.
  
  See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual,
  and section ‘Moving into C API compliance’ for issues with the use of
  non-API entry points.