#' #' Header for all (concatenated) test files #' #' Require spatstat.geom #' Obtain environment variable controlling tests. #' #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ require(spatstat.geom) FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) ALWAYS <- TRUE cat(paste("--------- Executing", if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", "test code -----------\n")) # # tests/utils.R # # Tests of miscellaneous utilities # # $Revision: 1.1 $ $Date: 2023/05/07 08:59:32 $ local({ if(FULLTEST) { ## test code blocks in 'progressreport' pstate <- list() for(i in 1:10) { Sys.sleep(1) pstate <- progressreport(i, 10, formula = (time ~ i + I(i^2) + I(i^3)), showtime=TRUE, savehistory=TRUE, state=pstate) } } }) # # tests/windows.R # # Tests of owin geometry code # # $Revision: 1.17 $ $Date: 2020/12/04 08:24:51 $ local({ if(ALWAYS) { # C code ## Ege Rubak spotted this problem in 1.28-1 A <- as.owin(ants) B <- dilation(A, 140) if(!is.subset.owin(A, B)) stop("is.subset.owin fails in polygonal case") ## thanks to Tom Rosenbaum A <- shift(square(3), origin="midpoint") B <- shift(square(1), origin="midpoint") AB <- setminus.owin(A, B) D <- shift(square(2), origin="midpoint") if(is.subset.owin(D,AB)) stop("is.subset.owin fails for polygons with holes") ## thanks to Brian Ripley / SpatialVx M <- as.mask(letterR) stopifnot(area(bdry.mask(M)) > 0) stopifnot(area(convexhull(M)) > 0) R <- as.mask(square(1)) stopifnot(area(bdry.mask(R)) > 0) stopifnot(area(convexhull(R)) > 0) } if(FULLTEST) { RR <- convexify(as.mask(letterR)) CC <- covering(letterR, 0.05, eps=0.1) #' as.owin.data.frame V <- as.mask(letterR, eps=0.2) Vdf <- as.data.frame(V) Vnew <- as.owin(Vdf) zz <- mask2df(V) } if(ALWAYS) { # C code RM <- owinpoly2mask(letterR, as.mask(Frame(letterR)), check=TRUE) } if(FULLTEST) { #' as.owin U <- as.owin(quadscheme(cells)) U2 <- as.owin(list(xmin=0, xmax=1, ymin=0, ymax=1)) } if(FULLTEST) { #' intersections involving masks B1 <- square(1) B2 <- as.mask(shift(B1, c(0.2, 0.3))) o12 <- overlap.owin(B1, B2) o21 <- overlap.owin(B2, B1) i12 <- intersect.owin(B1, B2, eps=0.01) i21 <- intersect.owin(B2, B1, eps=0.01) E2 <- emptywindow(square(2)) e12 <- intersect.owin(B1, E2) e21 <- intersect.owin(E2, B1) #' geometry inradius(B1) inradius(B2) inradius(letterR) inpoint(B1) inpoint(B2) inpoint(letterR) is.convex(B1) is.convex(B2) is.convex(letterR) volume(letterR) perimeter(as.mask(letterR)) boundingradius(cells) boundingbox(letterR) boundingbox(letterR, NULL) boundingbox(solist(letterR)) } if(ALWAYS) { # C code spatstat.options(Cbdrymask=FALSE) bb <- bdry.mask(letterR) spatstat.options(Cbdrymask=TRUE) } if(FULLTEST) { X <- longleaf[square(50)] marks(X) <- marks(X)/8 D <- discs(X) D <- discs(X, delta=5, separate=TRUE) } if(ALWAYS) { # C code AD <- dilated.areas(cells, r=0.01 * matrix(1:10, 10,1), constrained=FALSE, exact=FALSE) } if(FULLTEST) { periodify(B1, 2) periodify(union.owin(B1, B2), 2) periodify(letterR, 2) } if(ALWAYS) { #' Ancient bug in inside.owin W5 <- owin(poly=1e5*cbind(c(-1,1,1,-1),c(-1,-1,1,1))) W6 <- owin(poly=1e6*cbind(c(-1,1,1,-1),c(-1,-1,1,1))) i5 <- inside.owin(0,0,W5) i6 <- inside.owin(0,0,W6) if(!i5) stop("Wrong answer from inside.owin") if(i5 != i6) stop("Results from inside.owin are scale-dependent") } if(FULLTEST) { #' miscellaneous utilities thrash <- function(f) { f(letterR) f(Frame(letterR)) f(as.mask(letterR)) } thrash(meanX.owin) thrash(meanY.owin) thrash(intX.owin) thrash(intY.owin) interpretAsOrigin("right", letterR) interpretAsOrigin("bottom", letterR) interpretAsOrigin("bottomright", letterR) interpretAsOrigin("topleft", letterR) interpretAsOrigin("topright", letterR) } if(ALWAYS) { # depends on polyclip A <- break.holes(letterR) B <- break.holes(letterR, splitby="y") plot(letterR, col="blue", use.polypath=FALSE) } if(ALWAYS) { # C code #' mask conversion M <- as.mask(letterR) D2 <- as.data.frame(M) # two-column D3 <- as.data.frame(M, drop=FALSE) # three-column M2 <- as.owin(D2) M3 <- as.owin(D3) W2 <- owin(mask=D2) W3 <- owin(mask=D3) } if(FULLTEST) { #' void/empty cases nix <- nearest.raster.point(numeric(0), numeric(0), M) E <- emptywindow(Frame(letterR)) print(E) #' cases of summary.owin print(summary(E)) # empty print(summary(Window(humberside))) # single polygon #' additional cases of owin() B <- owin(mask=M$m) # no pixel size or coordinate info xy <- as.data.frame(letterR) xxyy <- split(xy[,1:2], xy$id) spatstat.options(checkpolygons=TRUE) H <- owin(poly=xxyy, check=TRUE) } #' Code for/using intersection and union of windows if(FULLTEST) { Empty <- emptywindow(Frame(letterR)) a <- intersect.owin() a <- intersect.owin(Empty) a <- intersect.owin(Empty, letterR) a <- intersect.owin(letterR, Empty) b <- intersect.owin() b <- intersect.owin(Empty) b <- intersect.owin(Empty, letterR) b <- intersect.owin(letterR, Empty) d <- union.owin(as.mask(square(1)), as.mask(square(2))) #' [.owin A <- erosion(letterR, 0.2) Alogi <- as.im(TRUE, W=A) B <- letterR[A] B <- letterR[Alogi] #' miscellaneous D <- convexhull(Alogi) } }) reset.spatstat.options() ## ## tests/xysegment.R ## [SEE ALSO tests/segments.R] ## ## Test weird problems and boundary cases for line segment code ## ## $Version$ $Date: 2022/10/23 01:21:09 $ ## local({ if(FULLTEST) { ## segment of length zero B <- psp(1/2, 1/2, 1/2, 1/2, window=square(1)) BB <- angles.psp(B) A <- runifrect(3) AB <- project2segment(A,B) ## mark inheritance X <- psp(runif(10), runif(10), runif(10), runif(10), window=owin()) marks(X) <- 1:10 Y <- selfcut.psp(X) marks(X) <- data.frame(A=1:10, B=factor(letters[1:10])) Z <- selfcut.psp(X) #' psp class support S <- unmark(X) marks(S) <- sample(factor(c("A","B")), nobjects(S), replace=TRUE) intensity(S) intensity(S, weights=runif(nsegments(S))) } })