* using log directory 'd:/RCompile/CRANincoming/R-devel/spatialTIME.Rcheck'
* using R Under development (unstable) (2023-12-18 r85702 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'spatialTIME/DESCRIPTION' ... OK
* this is package 'spatialTIME' version '1.3.4-2'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [10s] Note_to_CRAN_maintainers
Maintainer: 'Fridley Lab <fridley.lab@moffitt.org>'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'spatialTIME' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... ERROR
Running examples in 'spatialTIME-Ex.R' failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_immunoflo
> ### Title: Generate plot of TMA point process
> ### Aliases: plot_immunoflo
> 
> ### ** Examples
> 
> #Create mif object
> library(dplyr)

Attaching package: 'dplyr'

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

> x <- create_mif(clinical_data = example_clinical %>% 
+ mutate(deidentified_id = as.character(deidentified_id)),
+ sample_data = example_summary %>% 
+ mutate(deidentified_id = as.character(deidentified_id)),
+ spatial_list = example_spatial,
+ patient_id = "deidentified_id", 
+ sample_id = "deidentified_sample")
> 
> mnames_good <- c("CD3..Opal.570..Positive","CD8..Opal.520..Positive",
+ "FOXP3..Opal.620..Positive","PDL1..Opal.540..Positive",
+ "PD1..Opal.650..Positive","CD3..CD8.","CD3..FOXP3.")
> 
> x <- plot_immunoflo(x, plot_title = "deidentified_sample", mnames = mnames_good, 
+ cell_type = "Classifier.Label")
Error in mclapply(X, FUN, ..., mc.cores = mc.cores, mc.preschedule = mc.preschedule,  : 
  'mc.cores' > 1 is not supported on Windows
Calls: plot_immunoflo -> <Anonymous> -> mclapply
Execution halted
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... [68s] ERROR
Error(s) in re-building vignettes:
--- re-building 'deriving_functions.Rmd' using rmarkdown
--- finished re-building 'deriving_functions.Rmd'

--- re-building 'intro.Rmd' using rmarkdown

Quitting from lines 96-137 [plot_bad] (intro.Rmd)
Error: processing vignette 'intro.Rmd' failed with diagnostics:
'mc.cores' > 1 is not supported on Windows
--- failed re-building 'intro.Rmd'

SUMMARY: processing the following file failed:
  'intro.Rmd'

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [18s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 ERRORs