* using log directory 'd:/RCompile/CRANincoming/R-devel/spatPomp.Rcheck'
* using R Under development (unstable) (2024-08-20 r87029 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'spatPomp/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'spatPomp' version '0.36.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [13s] WARNING
Maintainer: 'Edward Ionides <ionides@umich.edu>'

Insufficient package version (submitted: 0.36.0, existing: 0.36.1)

Days since last update: 1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'spatPomp' can be installed ... OK
* used C compiler: 'gcc.exe (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [22s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... WARNING
Missing link or links in Rd file 'spatPomp-package.Rd':
  'pomp::pomp'

See section 'Cross-references' in the 'Writing R Extensions' manual.

Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  spatPomp-package.Rd: pomp::pomp
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... [122s] OK
  Running 'abf.R'
  Running 'abfir.R'
  Running 'arma_benchmark.R'
  Running 'bm.R' [29s]
  Comparing 'bm.Rout' to 'bm.Rout.save' ... OK
  Running 'bm2.R' [18s]
  Comparing 'bm2.Rout' to 'bm2.Rout.save' ... OK
  Running 'bpfilter.R'
  Running 'concat.R'
  Running 'enkf.R'
  Running 'gbm.R'
  Comparing 'gbm.Rout' to 'gbm.Rout.save' ... OK
  Running 'girf.R'
  Running 'he10.R' [11s]
  Comparing 'he10.Rout' to 'he10.Rout.save' ... OK
  Running 'ibpf.R'
  Running 'ienkf.R'
  Running 'igirf.R'
  Running 'iter_filter.R'
  Comparing 'iter_filter.Rout' to 'iter_filter.Rout.save' ... OK
  Running 'iubf.R'
  Running 'lorenz.R'
  Comparing 'lorenz.Rout' to 'lorenz.Rout.save' ... OK
  Running 'measles.R' [19s]
  Comparing 'measles.Rout' to 'measles.Rout.save' ... OK
  Running 'measles2.R' [23s]
  Comparing 'measles2.Rout' to 'measles2.Rout.save' ... OK
  Running 'param_formats.R'
  Comparing 'param_formats.Rout' to 'param_formats.Rout.save' ... OK
  Running 'pfilter.R'
  Running 'plot.R'
  Running 'simulate.R'
  Running 'spatPomp.R'
  Running 'undefined.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [27s] OK
* checking PDF version of manual ... [23s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 WARNINGs