downloading reverse dependencies ... downloading jti_0.8.4.tar.gz ... ok installing dependencies ‘ess’, ‘sparta’ begin installing package ‘ess’ begin installing package ‘sparta’ * installing *source* package ‘ess’ ... ** package ‘ess’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ using C++11 make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp4ypC46/R.INSTALL375a5514b7677d/ess/src' g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c dfs.cpp -o dfs.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c rip.cpp -o rip.o g++-14 -std=gnu++11 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c set_ops.cpp -o set_ops.o g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o ess.so RcppExports.o dfs.o rip.o set_ops.o -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp4ypC46/R.INSTALL375a5514b7677d/ess/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ess/00new/ess/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ess) * installing *source* package ‘sparta’ ... ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwpD66N/R.INSTALL375a532660278e/sparta/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c converters.cpp -o converters.o converters.cpp: In function ‘Rcpp::List as_cpt_(arma::Mat&, vec_dbl&, vec_str&, vec_str&)’: converters.cpp:50:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 50 | for (int i = 0; i < y.size(); i++) { | ~~^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c marginalize.cpp -o marginalize.o marginalize.cpp: In function ‘Rcpp::List marginalize_sum_(arma::Mat&, vec_dbl&, vec_str, vec_str)’: marginalize.cpp:49:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 49 | for (int k = 0; k < v.size(); k++) { | ~~^~~~~~~~~~ marginalize.cpp:17:7: warning: unused variable ‘n_col_x’ [-Wunused-variable] 17 | int n_col_x = xval.size(); | ^~~~~~~ marginalize.cpp: In function ‘Rcpp::List marginalize_sum_2(arma::Mat&, vec_dbl&, vec_str, vec_str)’: marginalize.cpp:73:7: warning: unused variable ‘n_col_x’ [-Wunused-variable] 73 | int n_col_x = xval.size(); | ^~~~~~~ marginalize.cpp: In function ‘Rcpp::List marginalize_max_(arma::Mat&, vec_dbl&, vec_str, vec_str)’: marginalize.cpp:161:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 161 | for (int k = 0; k < v.size(); k++) { | ~~^~~~~~~~~~ marginalize.cpp:131:7: warning: unused variable ‘n_col_x’ [-Wunused-variable] 131 | int n_col_x = xval.size(); | ^~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c merge.cpp -o merge.o merge.cpp: In function ‘Rcpp::List merge_disjoint_(arma::Mat&, arma::Mat&, vec_dbl&, vec_dbl&, vec_str, vec_str, std::string)’: merge.cpp:27:29: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 27 | for (std::size_t i = 0; i < n_col_x; i++) { | ~~^~~~~~~~~ merge.cpp:28:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] 28 | for (std::size_t j = 0; j < n_col_y; j++) { | ~~^~~~~~~~~ merge.cpp: In function ‘Rcpp::List merge_(arma::Mat&, arma::Mat&, vec_dbl&, vec_dbl&, vec_str, vec_str, std::string)’: merge.cpp:80:7: warning: unused variable ‘n_yvar’ [-Wunused-variable] 80 | int n_yvar = yvar.size(); | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c misc_utils.cpp -o misc_utils.o misc_utils.cpp: In function ‘umap_str_int paste_cols_from_index(arma::Mat&, arma::uvec&)’: misc_utils.cpp:48:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 48 | for (int i = 1; i < sep_idx.size(); i++) { | ~~^~~~~~~~~~~~~~~~ misc_utils.cpp: In function ‘umap_str_pair paste_marg(arma::Mat&, arma::uvec&, vec_dbl&)’: misc_utils.cpp:60:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::size_t’ {aka ‘long unsigned int’} [-Wsign-compare] 60 | for (int i = 0; i < N; i++) { | ~~^~~ misc_utils.cpp:64:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare] 64 | for (int i = 0; i < row_idx.size(); i++) { | ~~^~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c set_ops.cpp -o set_ops.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c slice.cpp -o slice.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c test_xptr.cpp -o test_xptr.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o sparta.so RcppExports.o converters.o marginalize.o merge.o misc_utils.o set_ops.o slice.o test_xptr.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-14/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwpD66N/R.INSTALL375a532660278e/sparta/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-sparta/00new/sparta/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sparta) checking sparta_1.0.1.tar.gz ... checking jti_0.8.4.tar.gz ... Depends: Package: sparta Imports: Rcpp (>= 1.0.5) LinkingTo: Rcpp, RcppArmadillo Timings: user system elapsed sparta 53.666 5.699 60.733 Results: Check status summary: NOTE Source packages 1 Reverse depends 1 Check results summary: sparta ... NOTE * checking CRAN incoming feasibility ... [5s/6s] NOTE rdepends_jti ... NOTE * checking C++ specification ... NOTE