* using log directory ‘/srv/hornik/tmp/CRAN/spagmix.Rcheck’ * using R Under development (unstable) (2024-05-26 r86630) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.4 (1) Debian flang-new version 18.1.4 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘spagmix/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘spagmix’ version ‘0.4-0’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Tilman M. Davies ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Spatio (3:31) CRAN repository db overrides: X-CRAN-Comment: Archived on 2022-05-04 as requires archived package 'RandomFields'. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘spagmix’ can be installed ... [4s/5s] WARNING Found the following significant warnings: Warning: replacing previous import ‘spatstat.geom::weighted.median’ by ‘spatstat.univar::weighted.median’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::integral.density’ by ‘spatstat.univar::integral.density’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::as.breakpts’ by ‘spatstat.univar::as.breakpts’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::check.hist.lengths’ by ‘spatstat.univar::check.hist.lengths’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::hotrod’ by ‘spatstat.univar::hotrod’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::mean.ewcdf’ by ‘spatstat.univar::mean.ewcdf’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::breakpts.from.r’ by ‘spatstat.univar::breakpts.from.r’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::quantile.ewcdf’ by ‘spatstat.univar::quantile.ewcdf’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::whist’ by ‘spatstat.univar::whist’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::transformquantiles’ by ‘spatstat.univar::transformquantiles’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::make.even.breaks’ by ‘spatstat.univar::make.even.breaks’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::quantilefun.ecdf’ by ‘spatstat.univar::quantilefun.ecdf’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::weighted.quantile’ by ‘spatstat.univar::weighted.quantile’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::mean.ecdf’ by ‘spatstat.univar::mean.ecdf’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::print.ewcdf’ by ‘spatstat.univar::print.ewcdf’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::quantilefun.interpolatedCDF’ by ‘spatstat.univar::quantilefun.interpolatedCDF’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::quantilefun.ewcdf’ by ‘spatstat.univar::quantilefun.ewcdf’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::unnormdensity’ by ‘spatstat.univar::unnormdensity’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::integral’ by ‘spatstat.univar::integral’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::quantilefun’ by ‘spatstat.univar::quantilefun’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.random::indefinteg’ by ‘spatstat.univar::indefinteg’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::ewcdf’ by ‘spatstat.univar::ewcdf’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::breakpts’ by ‘spatstat.univar::breakpts’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.geom::weighted.var’ by ‘spatstat.univar::weighted.var’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::km.rs’ by ‘spatstat.explore::km.rs’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::StieltjesCalc.stepfun’ by ‘spatstat.explore::StieltjesCalc.stepfun’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::kaplan.meier’ by ‘spatstat.explore::kaplan.meier’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::reduced.sample’ by ‘spatstat.explore::reduced.sample’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::pkernel’ by ‘spatstat.explore::pkernel’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::match.kernel’ by ‘spatstat.explore::match.kernel’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::kernel.squint’ by ‘spatstat.explore::kernel.squint’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::kernel.moment’ by ‘spatstat.explore::kernel.moment’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::qkernel’ by ‘spatstat.explore::qkernel’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::km.rs.opt’ by ‘spatstat.explore::km.rs.opt’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::rkernel’ by ‘spatstat.explore::rkernel’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::stieltjes’ by ‘spatstat.explore::stieltjes’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::CDF’ by ‘spatstat.explore::CDF’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::CDF.density’ by ‘spatstat.explore::CDF.density’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::dkernel’ by ‘spatstat.explore::dkernel’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::kernel.factor’ by ‘spatstat.explore::kernel.factor’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::quantile.density’ by ‘spatstat.explore::quantile.density’ when loading ‘spagmix’ Warning: replacing previous import ‘spatstat.univar::StieltjesCalc’ by ‘spatstat.explore::StieltjesCalc’ when loading ‘spagmix’ See ‘/srv/hornik/tmp/CRAN/spagmix.Rcheck/00install.out’ for details. * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s/1s] OK * checking whether the package can be loaded with stated dependencies ... [1s/1s] OK * checking whether the package can be unloaded cleanly ... [1s/1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK * checking whether the namespace can be unloaded cleanly ... [1s/1s] OK * checking loading without being on the library search path ... [1s/1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/7s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... [3s/3s] OK * checking PDF version of manual ... [4s/4s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 WARNING, 1 NOTE