* installing *source* package 'spOccupancy' ... ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PGOcc.cpp -o PGOcc.o PGOcc.cpp: In function 'SEXPREC* PGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': PGOcc.cpp:572:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 572 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:182:10: note: 'sigmaSqPSamples_r' was declared here 182 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:574:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 574 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:183:10: note: 'alphaStarSamples_r' was declared here 183 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ PGOcc.cpp:566:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 566 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:191:10: note: 'sigmaSqPsiSamples_r' was declared here 191 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:568:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 568 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:192:10: note: 'betaStarSamples_r' was declared here 192 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:649:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 649 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ PGOcc.cpp:211:12: note: 'tmp_0' was declared here 211 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c idist.cpp -o idist.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intMsPGOcc.cpp -o intMsPGOcc.o intMsPGOcc.cpp: In function 'SEXPREC* intMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': intMsPGOcc.cpp:696:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 696 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:237:10: note: 'sigmaSqPsiSamples_r' was declared here 237 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:697:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 697 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:238:10: note: 'betaStarSamples_r' was declared here 238 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:779:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 779 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ intMsPGOcc.cpp:163:12: note: 'tmp_0' was declared here 163 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intPGOcc.cpp -o intPGOcc.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfJSDM.cpp -o lfJSDM.o lfJSDM.cpp: In function 'SEXPREC* lfJSDM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfJSDM.cpp:618:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 618 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:217:10: note: 'sigmaSqPsiSamples_r' was declared here 217 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:619:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 619 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:218:10: note: 'betaStarSamples_r' was declared here 218 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsPGOcc.cpp -o lfMsPGOcc.o lfMsPGOcc.cpp: In function 'SEXPREC* lfMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfMsPGOcc.cpp:925:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 925 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:279:10: note: 'sigmaSqPSamples_r' was declared here 279 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:926:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 926 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:280:10: note: 'alphaStarSamples_r' was declared here 280 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:929:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 929 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:288:10: note: 'sigmaSqPsiSamples_r' was declared here 288 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:930:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 930 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:289:10: note: 'betaStarSamples_r' was declared here 289 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:1022:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1022 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ lfMsPGOcc.cpp:165:12: note: 'tmp_0' was declared here 165 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkSpCov.cpp -o mkSpCov.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msPGOcc.cpp -o msPGOcc.o msPGOcc.cpp: In function 'SEXPREC* msPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': msPGOcc.cpp:717:59: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 717 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:240:10: note: 'sigmaSqPSamples_r' was declared here 240 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:718:61: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 718 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:241:10: note: 'alphaStarSamples_r' was declared here 241 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msPGOcc.cpp:721:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 721 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:249:10: note: 'sigmaSqPsiSamples_r' was declared here 249 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:722:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 722 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:250:10: note: 'betaStarSamples_r' was declared here 250 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:803:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 803 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ msPGOcc.cpp:155:12: note: 'tmp_0' was declared here 155 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c postHocLM.cpp -o postHocLM.o postHocLM.cpp: In function 'SEXPREC* postHocLM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': postHocLM.cpp:291:26: warning: 'sigmaSqSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 291 | &REAL(sigmaSqSamples_r)[s*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~ postHocLM.cpp:113:10: note: 'sigmaSqSamples_r' was declared here 113 | SEXP sigmaSqSamples_r; | ^~~~~~~~~~~~~~~~ postHocLM.cpp:293:26: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 293 | &REAL(betaStarSamples_r)[s*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ postHocLM.cpp:114:10: note: 'betaStarSamples_r' was declared here 114 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rpg.cpp -o rpg.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o sfJSDMNNGP.cpp: In function 'SEXPREC* sfJSDMNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfJSDMNNGP.cpp:977:59: warning: 'betaCommSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 977 | F77_NAME(dcopy)(&pOcc, betaComm, &inc, &REAL(betaCommSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:286:10: note: 'betaCommSamples_r' was declared here 286 | SEXP betaCommSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:980:60: warning: 'tauSqBetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 980 | F77_NAME(dcopy)(&pOcc, tauSqBeta, &inc, &REAL(tauSqBetaSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:291:10: note: 'tauSqBetaSamples_r' was declared here 291 | SEXP tauSqBetaSamples_r; | ^~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:983:56: warning: 'betaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 983 | F77_NAME(dcopy)(&pOccN, beta, &inc, &REAL(betaSamples_r)[sPost*pOccN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:297:10: note: 'betaSamples_r' was declared here 297 | SEXP betaSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:992:50: warning: 'zSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 992 | F77_NAME(dcopy)(&JN, z, &inc, &REAL(zSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:304:10: note: 'zSamples_r' was declared here 304 | SEXP zSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:989:52: warning: 'psiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 989 | F77_NAME(dcopy)(&JN, psi, &inc, &REAL(psiSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~ sfJSDMNNGP.cpp:309:10: note: 'psiSamples_r' was declared here 309 | SEXP psiSamples_r; | ^~~~~~~~~~~~ sfJSDMNNGP.cpp:986:55: warning: 'lambdaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 986 | F77_NAME(dcopy)(&Nq, lambda, &inc, &REAL(lambdaSamples_r)[sPost*Nq], &inc); | ~~~~^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:315:10: note: 'lambdaSamples_r' was declared here 315 | SEXP lambdaSamples_r; | ^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:995:50: warning: 'wSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 995 | F77_NAME(dcopy)(&Jq, w, &inc, &REAL(wSamples_r)[sPost*Jq], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:320:10: note: 'wSamples_r' was declared here 320 | SEXP wSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:1006:65: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1006 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:326:10: note: 'sigmaSqPsiSamples_r' was declared here 326 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1009:64: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1009 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:327:10: note: 'betaStarSamples_r' was declared here 327 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1013:54: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1013 | F77_NAME(dcopy)(&JN, yWAIC, &inc, &REAL(likeSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:339:10: note: 'likeSamples_r' was declared here 339 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:1001:79: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1001 | F77_NAME(dcopy)(&nThetaqSave, &theta[phiIndx * q], &inc, &REAL(thetaSamples_r)[sPost*nThetaqSave], &inc); | ~~~~^~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:428:10: note: 'thetaSamples_r' was declared here 428 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o sfMsPGOccNNGP.cpp: In function 'SEXPREC* sfMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfMsPGOccNNGP.cpp:1250:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1250 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:366:10: note: 'sigmaSqPSamples_r' was declared here 366 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1251:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1251 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:367:10: note: 'alphaStarSamples_r' was declared here 367 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1254:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1254 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:375:10: note: 'sigmaSqPsiSamples_r' was declared here 375 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1255:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1255 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:376:10: note: 'betaStarSamples_r' was declared here 376 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1373:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1373 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:241:12: note: 'tmp_0' was declared here 241 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o sfMsPGOccNNGPPredict.cpp: In function 'SEXPREC* sfMsPGOccNNGPPredict(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfMsPGOccNNGPPredict.cpp:143:39: warning: 'nuIndx' may be used uninitialized [-Wmaybe-uninitialized] 143 | if(theta[s*nThetaq + nuIndx * q + ll] > nuMax[ll]){ | ~~~~~~~^~~ sfMsPGOccNNGPPredict.cpp:108:26: note: 'nuIndx' was declared here 108 | int nTheta, phiIndx, nuIndx, sigmaSqIndx; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOcc.cpp -o spIntPGOcc.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o spIntPGOccNNGP.cpp: In function 'SEXPREC* spIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spIntPGOccNNGP.cpp:321:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 321 | double logDet; | ^~~~~~ spIntPGOccNNGP.cpp:329:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 329 | double a, v, b, e, mu, var, aij; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOcc.cpp -o spMsPGOcc.o spMsPGOcc.cpp: In function 'SEXPREC* spMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOcc.cpp:1040:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1040 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:290:10: note: 'sigmaSqPSamples_r' was declared here 290 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1042:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1042 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:291:10: note: 'alphaStarSamples_r' was declared here 291 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1046:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1046 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:299:10: note: 'sigmaSqPsiSamples_r' was declared here 299 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1048:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1048 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:300:10: note: 'betaStarSamples_r' was declared here 300 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1167:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1167 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:183:12: note: 'tmp_0' was declared here 183 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o spMsPGOccNNGP.cpp: In function 'SEXPREC* spMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOccNNGP.cpp:1078:36: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1078 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:337:10: note: 'sigmaSqPSamples_r' was declared here 337 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1080:36: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1080 | &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:338:10: note: 'alphaStarSamples_r' was declared here 338 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1084:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1084 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:346:10: note: 'sigmaSqPsiSamples_r' was declared here 346 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1086:36: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1086 | &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:347:10: note: 'betaStarSamples_r' was declared here 347 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:497:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 497 | double logDet; | ^~~~~~ spMsPGOccNNGP.cpp:466:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 466 | double a, v, b, e, mu, var, aij; | ^ spMsPGOccNNGP.cpp:1206:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1206 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:232:12: note: 'tmp_0' was declared here 232 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOcc.cpp -o spPGOcc.o spPGOcc.cpp: In function 'SEXPREC* spPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOcc.cpp:806:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 806 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:207:10: note: 'sigmaSqPSamples_r' was declared here 207 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:808:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 808 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:208:10: note: 'alphaStarSamples_r' was declared here 208 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOcc.cpp:800:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 800 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:216:10: note: 'sigmaSqPsiSamples_r' was declared here 216 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:802:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 802 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:217:10: note: 'betaStarSamples_r' was declared here 217 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:917:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 917 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:237:12: note: 'tmp_0' was declared here 237 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGP.cpp -o spPGOccNNGP.o spPGOccNNGP.cpp: In function 'SEXPREC* spPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOccNNGP.cpp:886:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 886 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:261:10: note: 'sigmaSqPSamples_r' was declared here 261 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:888:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 888 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:262:10: note: 'alphaStarSamples_r' was declared here 262 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:880:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 880 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:270:10: note: 'sigmaSqPsiSamples_r' was declared here 270 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:882:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 882 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:271:10: note: 'betaStarSamples_r' was declared here 271 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:388:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 388 | double logDet; | ^~~~~~ spPGOccNNGP.cpp:399:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 399 | double a, v, b, e, mu, var, aij; | ^ spPGOccNNGP.cpp:997:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 997 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:291:12: note: 'tmp_0' was declared here 291 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccPredict.cpp -o spPGOccPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o stMsPGOccNNGP.cpp: In function 'SEXPREC* stMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stMsPGOccNNGP.cpp:1509:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1509 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:392:10: note: 'sigmaSqPSamples_r' was declared here 392 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1510:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1510 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:393:10: note: 'alphaStarSamples_r' was declared here 393 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1513:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1513 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:401:10: note: 'sigmaSqPsiSamples_r' was declared here 401 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1514:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1514 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:402:10: note: 'betaStarSamples_r' was declared here 402 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1506:57: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1506 | F77_NAME(dcopy)(&NnYears, eta, &inc, &REAL(etaSamples_r)[sPost*NnYears], &inc); | ~~~~^~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:416:10: note: 'etaSamples_r' was declared here 416 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stMsPGOccNNGP.cpp:1505:36: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1505 | &REAL(ar1ThetaSamples_r)[sPost*nAR1N], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:417:10: note: 'ar1ThetaSamples_r' was declared here 417 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1663:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1663 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:256:12: note: 'tmp_0' was declared here 256 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGP.cpp -o stPGOccNNGP.o stPGOccNNGP.cpp: In function 'SEXPREC* stPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stPGOccNNGP.cpp:1223:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1223 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:290:10: note: 'etaSamples_r' was declared here 290 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:1117:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1117 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:299:10: note: 'sigmaSqPSamples_r' was declared here 299 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1119:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1119 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:300:10: note: 'alphaStarSamples_r' was declared here 300 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1111:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1111 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:308:10: note: 'sigmaSqPsiSamples_r' was declared here 308 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1113:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1113 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:309:10: note: 'betaStarSamples_r' was declared here 309 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:480:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 480 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5]; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:426:47: note: 'sigmaSqTIndx' was declared here 426 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:481:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 481 | theta[rhoIndx] = REAL(ar1Vals_r)[4]; | ^~~~~~~ stPGOccNNGP.cpp:426:61: note: 'rhoIndx' was declared here 426 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ stPGOccNNGP.cpp:512:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 512 | double logDet; | ^~~~~~ stPGOccNNGP.cpp:444:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 444 | double a, v, b, e, mu, var, aij; | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o svcMsPGOccNNGP.cpp: In function 'SEXPREC* svcMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcMsPGOccNNGP.cpp:1326:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1326 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:372:10: note: 'sigmaSqPSamples_r' was declared here 372 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1327:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1327 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:373:10: note: 'alphaStarSamples_r' was declared here 373 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1330:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1330 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:381:10: note: 'sigmaSqPsiSamples_r' was declared here 381 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1331:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1331 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:382:10: note: 'betaStarSamples_r' was declared here 382 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1450:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1450 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:248:12: note: 'tmp_0' was declared here 248 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o svcPGBinomNNGP.cpp: In function 'SEXPREC* svcPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGBinomNNGP.cpp:729:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 729 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:239:10: note: 'sigmaSqPsiSamples_r' was declared here 239 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:731:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 731 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:240:10: note: 'betaStarSamples_r' was declared here 240 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:581:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 581 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGBinomNNGP.cpp:323:12: note: 'logDet' was declared here 323 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o svcPGOccNNGP.cpp: In function 'SEXPREC* svcPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGOccNNGP.cpp:981:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 981 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:277:10: note: 'sigmaSqPSamples_r' was declared here 277 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:983:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 983 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:278:10: note: 'alphaStarSamples_r' was declared here 278 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:975:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 975 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:286:10: note: 'sigmaSqPsiSamples_r' was declared here 286 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:977:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 977 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:287:10: note: 'betaStarSamples_r' was declared here 287 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:793:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 793 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGOccNNGP.cpp:407:12: note: 'logDet' was declared here 407 | double logDet; | ^~~~~~ svcPGOccNNGP.cpp:1095:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1095 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:307:12: note: 'tmp_0' was declared here 307 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o svcTMsPGOccNNGP.cpp: In function 'SEXPREC* svcTMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTMsPGOccNNGP.cpp:1631:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1631 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:410:10: note: 'sigmaSqPSamples_r' was declared here 410 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1632:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1632 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:411:10: note: 'alphaStarSamples_r' was declared here 411 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1635:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1635 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:419:10: note: 'sigmaSqPsiSamples_r' was declared here 419 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1636:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1636 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:420:10: note: 'betaStarSamples_r' was declared here 420 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1628:57: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1628 | F77_NAME(dcopy)(&NnYears, eta, &inc, &REAL(etaSamples_r)[sPost*NnYears], &inc); | ~~~~^~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:434:10: note: 'etaSamples_r' was declared here 434 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1627:36: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1627 | &REAL(ar1ThetaSamples_r)[sPost*nAR1N], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:435:10: note: 'ar1ThetaSamples_r' was declared here 435 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1789:21: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1789 | SET_VECTOR_ELT(resultName_r, tmp_0, mkChar("sigma.sq.psi.samples")); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:270:12: note: 'tmp_0' was declared here 270 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o svcTPGBinomNNGP.cpp: In function 'SEXPREC* svcTPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGBinomNNGP.cpp:951:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 951 | &REAL(sigmaSqPsiSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:260:10: note: 'sigmaSqPsiSamples_r' was declared here 260 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:953:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 953 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:261:10: note: 'betaStarSamples_r' was declared here 261 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:1049:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1049 | SET_VECTOR_ELT(result_r, tmp_0, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:273:10: note: 'etaSamples_r' was declared here 273 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGBinomNNGP.cpp:680:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 680 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGBinomNNGP.cpp:368:12: note: 'logDet' was declared here 368 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o svcTPGOccNNGP.cpp: In function 'SEXPREC* svcTPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGOccNNGP.cpp:1329:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1329 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:299:10: note: 'etaSamples_r' was declared here 299 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:1204:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1204 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:308:10: note: 'sigmaSqPSamples_r' was declared here 308 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1206:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1206 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:309:10: note: 'alphaStarSamples_r' was declared here 309 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1198:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1198 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:317:10: note: 'sigmaSqPsiSamples_r' was declared here 317 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1200:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1200 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:318:10: note: 'betaStarSamples_r' was declared here 318 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:517:13: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 517 | theta[sigmaSqTIndx] = REAL(ar1Vals_r)[5]; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:438:47: note: 'sigmaSqTIndx' was declared here 438 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:518:13: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 518 | theta[rhoIndx] = REAL(ar1Vals_r)[4]; | ^~~~~~~ svcTPGOccNNGP.cpp:438:61: note: 'rhoIndx' was declared here 438 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ svcTPGOccNNGP.cpp:893:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 893 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGOccNNGP.cpp:456:12: note: 'logDet' was declared here 456 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tMsPGOcc.cpp -o tMsPGOcc.o tMsPGOcc.cpp: In function 'SEXPREC* tMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tMsPGOcc.cpp:1145:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1145 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:277:10: note: 'etaSamples_r' was declared here 277 | SEXP etaSamples_r; | ^~~~~~~~~~~~ tMsPGOcc.cpp:1146:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1146 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:278:10: note: 'thetaSamples_r' was declared here 278 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ tMsPGOcc.cpp:1032:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1032 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:301:10: note: 'sigmaSqPSamples_r' was declared here 301 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1033:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1033 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:302:10: note: 'alphaStarSamples_r' was declared here 302 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1036:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1036 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:310:10: note: 'sigmaSqPsiSamples_r' was declared here 310 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1037:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1037 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:311:10: note: 'betaStarSamples_r' was declared here 311 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1167:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1167 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ tMsPGOcc.cpp:182:12: note: 'tmp_0' was declared here 182 | double tmp_0, tmp_02; | ^~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tPGOcc.cpp -o tPGOcc.o tPGOcc.cpp: In function 'SEXPREC* tPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tPGOcc.cpp:911:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 911 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:206:10: note: 'etaSamples_r' was declared here 206 | SEXP etaSamples_r; | ^~~~~~~~~~~~ tPGOcc.cpp:818:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 818 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:215:10: note: 'sigmaSqPSamples_r' was declared here 215 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:820:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 820 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:216:10: note: 'alphaStarSamples_r' was declared here 216 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tPGOcc.cpp:812:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 812 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:224:10: note: 'sigmaSqPsiSamples_r' was declared here 224 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:814:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 814 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:225:10: note: 'betaStarSamples_r' was declared here 225 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:912:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 912 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:349:10: note: 'thetaSamples_r' was declared here 349 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util.cpp -o util.o g++ -std=gnu++17 -shared -s -static-libgcc -o spOccupancy.dll tmp.def PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tMsPGOcc.o tPGOcc.o util.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-spOccupancy/00new/spOccupancy/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spOccupancy)