* installing *source* package ‘spOccupancy’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 17.0.6 (5)’
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-17/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -c PGOcc.cpp -o PGOcc.o
PGOcc.cpp:102:7: error: use of undeclared identifier 'warning'
  102 |       warning("n.omp.threads > 1, but source not compiled with OpenMP support.");
      |       ^
PGOcc.cpp:170:29: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  170 |     PROTECT(betaSamples_r = allocMatrix(REALSXP, pOcc, nPost)); nProtect++;
      |                             ^~~~~~~~~~~
      |                             Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:173:30: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  173 |     PROTECT(alphaSamples_r = allocMatrix(REALSXP, pDet, nPost)); nProtect++;
      |                              ^~~~~~~~~~~
      |                              Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:176:26: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  176 |     PROTECT(zSamples_r = allocMatrix(REALSXP, J, nPost)); nProtect++; 
      |                          ^~~~~~~~~~~
      |                          Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:179:28: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  179 |     PROTECT(psiSamples_r = allocMatrix(REALSXP, J, nPost)); nProtect++; 
      |                            ^~~~~~~~~~~
      |                            Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:185:35: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  185 |       PROTECT(sigmaSqPSamples_r = allocMatrix(REALSXP, pDetRE, nPost)); nProtect++;
      |                                   ^~~~~~~~~~~
      |                                   Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:187:36: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  187 |       PROTECT(alphaStarSamples_r = allocMatrix(REALSXP, nDetRE, nPost)); nProtect++;
      |                                    ^~~~~~~~~~~
      |                                    Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:194:37: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  194 |       PROTECT(sigmaSqPsiSamples_r = allocMatrix(REALSXP, pOccRE, nPost)); nProtect++;
      |                                     ^~~~~~~~~~~
      |                                     Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:196:35: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  196 |       PROTECT(betaStarSamples_r = allocMatrix(REALSXP, nOccRE, nPost)); nProtect++;
      |                                   ^~~~~~~~~~~
      |                                   Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:201:29: error: use of undeclared identifier 'allocMatrix'; did you mean 'Rf_allocMatrix'?
  201 |     PROTECT(likeSamples_r = allocMatrix(REALSXP, J, nPost)); nProtect++;
      |                             ^~~~~~~~~~~
      |                             Rf_allocMatrix
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:371:31: note: expanded from macro 'PROTECT'
  371 | #define PROTECT(s)      Rf_protect(s)
      |                                    ^
/home/hornik/tmp/R-d-clang-17/include/Rinternals.h:486:6: note: 'Rf_allocMatrix' declared here
  486 | SEXP Rf_allocMatrix(SEXPTYPE, int, int);
      |      ^
PGOcc.cpp:243:19: error: use of undeclared identifier 'error'
  243 |     if(info != 0){error("c++ error: dpotrf SigmaBetaInv failed\n");}
      |                   ^
PGOcc.cpp:245:19: error: use of undeclared identifier 'error'
  245 |     if(info != 0){error("c++ error: dpotri SigmaBetaInv failed\n");}
      |                   ^
PGOcc.cpp:251:19: error: use of undeclared identifier 'error'
  251 |     if(info != 0){error("c++ error: dpotrf SigmaAlphaInv failed\n");}
      |                   ^
PGOcc.cpp:253:19: error: use of undeclared identifier 'error'
  253 |     if(info != 0){error("c++ error: dpotri SigmaAlphaInv failed\n");}
      |                   ^
PGOcc.cpp:357:21: error: use of undeclared identifier 'error'
  357 |       if(info != 0){error("c++ error: dpotrf here failed\n");}
      |                     ^
PGOcc.cpp:359:21: error: use of undeclared identifier 'error'
  359 |       if(info != 0){error("c++ error: dpotri here failed\n");}
      |                     ^
PGOcc.cpp:362:21: error: use of undeclared identifier 'error'
  362 |       if(info != 0){error("c++ error: dpotrf here failed\n");}
      |                     ^
PGOcc.cpp:406:21: error: use of undeclared identifier 'error'
  406 |       if(info != 0){error("c++ error: dpotrf A.alpha failed\n");}
      |                     ^
PGOcc.cpp:408:21: error: use of undeclared identifier 'error'
  408 |       if(info != 0){error("c++ error: dpotri A.alpha failed\n");}
      |                     ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
make: *** [/home/hornik/tmp/R-d-clang-17/etc/Makeconf:202: PGOcc.o] Error 1
ERROR: compilation failed for package ‘spOccupancy’
* removing ‘/srv/hornik/tmp/CRAN/spOccupancy.Rcheck/spOccupancy’