* installing *source* package ‘spOccupancy’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 17.0.6 (5)’
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c PGOcc.cpp -o PGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c idist.cpp -o idist.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c init.cpp -o init.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c intMsPGOcc.cpp -o intMsPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c intPGOcc.cpp -o intPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c lfJSDM.cpp -o lfJSDM.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c lfMsPGOcc.cpp -o lfMsPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c mkSpCov.cpp -o mkSpCov.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c msPGOcc.cpp -o msPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c nn.cpp -o nn.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c postHocLM.cpp -o postHocLM.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c rpg.cpp -o rpg.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spIntPGOcc.cpp -o spIntPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spMsPGOcc.cpp -o spMsPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spPGOcc.cpp -o spPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spPGOccNNGP.cpp -o spPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c spPGOccPredict.cpp -o spPGOccPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c stPGOccNNGP.cpp -o stPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c tMsPGOcc.cpp -o tMsPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c tPGOcc.cpp -o tPGOcc.o
clang++-17  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic  -c util.cpp -o util.o
clang++-17 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o spOccupancy.so PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tMsPGOcc.o tPGOcc.o util.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-17/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/spOccupancy.Rcheck/00LOCK-spOccupancy/00new/spOccupancy/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (spOccupancy)