* installing *source* package 'spOccupancy' ... ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 12.2.0' g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c PGOcc.cpp -o PGOcc.o PGOcc.cpp: In function 'SEXPREC* PGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': PGOcc.cpp:649:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 649 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ PGOcc.cpp:211:12: note: 'tmp_0' was declared here 211 | double tmp_0, tmp_02; | ^~~~~ PGOcc.cpp:635:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 635 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:192:10: note: 'betaStarSamples_r' was declared here 192 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ PGOcc.cpp:634:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 634 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:191:10: note: 'sigmaSqPsiSamples_r' was declared here 191 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:574:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 574 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ PGOcc.cpp:183:10: note: 'alphaStarSamples_r' was declared here 183 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ PGOcc.cpp:572:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 572 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ PGOcc.cpp:182:10: note: 'sigmaSqPSamples_r' was declared here 182 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c idist.cpp -o idist.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.cpp -o init.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intMsPGOcc.cpp -o intMsPGOcc.o intMsPGOcc.cpp: In function 'SEXPREC* intMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': intMsPGOcc.cpp:779:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 779 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ intMsPGOcc.cpp:163:12: note: 'tmp_0' was declared here 163 | double tmp_0, tmp_02; | ^~~~~ intMsPGOcc.cpp:762:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 762 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:238:10: note: 'betaStarSamples_r' was declared here 238 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:761:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 761 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ intMsPGOcc.cpp:237:10: note: 'sigmaSqPsiSamples_r' was declared here 237 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c intPGOcc.cpp -o intPGOcc.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfJSDM.cpp -o lfJSDM.o lfJSDM.cpp: In function 'SEXPREC* lfJSDM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfJSDM.cpp:665:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 665 | SET_VECTOR_ELT(result_r, 9, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:214:10: note: 'betaStarSamples_r' was declared here 214 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfJSDM.cpp:664:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 664 | SET_VECTOR_ELT(result_r, 8, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfJSDM.cpp:213:10: note: 'sigmaSqPsiSamples_r' was declared here 213 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lfMsPGOcc.cpp -o lfMsPGOcc.o lfMsPGOcc.cpp: In function 'SEXPREC* lfMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': lfMsPGOcc.cpp:1022:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1022 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ lfMsPGOcc.cpp:165:12: note: 'tmp_0' was declared here 165 | double tmp_0, tmp_02; | ^~~~~ lfMsPGOcc.cpp:930:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 930 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:289:10: note: 'betaStarSamples_r' was declared here 289 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:929:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 929 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:288:10: note: 'sigmaSqPsiSamples_r' was declared here 288 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:991:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 991 | SET_VECTOR_ELT(result_r, 12, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:280:10: note: 'alphaStarSamples_r' was declared here 280 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:990:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 990 | SET_VECTOR_ELT(result_r, 11, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsPGOcc.cpp:279:10: note: 'sigmaSqPSamples_r' was declared here 279 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mkSpCov.cpp -o mkSpCov.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c msPGOcc.cpp -o msPGOcc.o msPGOcc.cpp: In function 'SEXPREC* msPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': msPGOcc.cpp:803:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 803 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ msPGOcc.cpp:155:12: note: 'tmp_0' was declared here 155 | double tmp_0, tmp_02; | ^~~~~ msPGOcc.cpp:722:60: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 722 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:250:10: note: 'betaStarSamples_r' was declared here 250 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msPGOcc.cpp:721:61: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 721 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:249:10: note: 'sigmaSqPsiSamples_r' was declared here 249 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:777:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 777 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:241:10: note: 'alphaStarSamples_r' was declared here 241 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msPGOcc.cpp:776:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 776 | SET_VECTOR_ELT(result_r, 9, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msPGOcc.cpp:240:10: note: 'sigmaSqPSamples_r' was declared here 240 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c nn.cpp -o nn.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c postHocLM.cpp -o postHocLM.o postHocLM.cpp: In function 'SEXPREC* postHocLM(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': postHocLM.cpp:334:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 334 | SET_VECTOR_ELT(result_r, 4, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ postHocLM.cpp:114:10: note: 'betaStarSamples_r' was declared here 114 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ postHocLM.cpp:333:21: warning: 'sigmaSqSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 333 | SET_VECTOR_ELT(result_r, 3, sigmaSqSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ postHocLM.cpp:113:10: note: 'sigmaSqSamples_r' was declared here 113 | SEXP sigmaSqSamples_r; | ^~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c rpg.cpp -o rpg.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfJSDMNNGP.cpp -o sfJSDMNNGP.o sfJSDMNNGP.cpp: In function 'SEXPREC* sfJSDMNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfJSDMNNGP.cpp:922:77: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 922 | F77_NAME(dcopy)(&nThetaqSave, &theta[phiIndx * q], &inc, &REAL(thetaSamples_r)[sPost*nThetaqSave], &inc); | ~~~~^~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:408:10: note: 'thetaSamples_r' was declared here 408 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ sfJSDMNNGP.cpp:933:54: warning: 'likeSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 933 | F77_NAME(dcopy)(&JN, yWAIC, &inc, &REAL(likeSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:328:10: note: 'likeSamples_r' was declared here 328 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:929:64: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 929 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:316:10: note: 'betaStarSamples_r' was declared here 316 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1031:23: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1031 | SET_VECTOR_ELT(result_r, 10, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:315:10: note: 'sigmaSqPsiSamples_r' was declared here 315 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:919:50: warning: 'wSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 919 | F77_NAME(dcopy)(&Jq, w, &inc, &REAL(wSamples_r)[sPost*Jq], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:309:10: note: 'wSamples_r' was declared here 309 | SEXP wSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:910:55: warning: 'lambdaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 910 | F77_NAME(dcopy)(&Nq, lambda, &inc, &REAL(lambdaSamples_r)[sPost*Nq], &inc); | ~~~~^~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:304:10: note: 'lambdaSamples_r' was declared here 304 | SEXP lambdaSamples_r; | ^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:913:52: warning: 'psiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 913 | F77_NAME(dcopy)(&JN, psi, &inc, &REAL(psiSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~ sfJSDMNNGP.cpp:298:10: note: 'psiSamples_r' was declared here 298 | SEXP psiSamples_r; | ^~~~~~~~~~~~ sfJSDMNNGP.cpp:916:50: warning: 'zSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 916 | F77_NAME(dcopy)(&JN, z, &inc, &REAL(zSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~ sfJSDMNNGP.cpp:293:10: note: 'zSamples_r' was declared here 293 | SEXP zSamples_r; | ^~~~~~~~~~ sfJSDMNNGP.cpp:907:56: warning: 'betaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 907 | F77_NAME(dcopy)(&pOccN, beta, &inc, &REAL(betaSamples_r)[sPost*pOccN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:286:10: note: 'betaSamples_r' was declared here 286 | SEXP betaSamples_r; | ^~~~~~~~~~~~~ sfJSDMNNGP.cpp:904:60: warning: 'tauSqBetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 904 | F77_NAME(dcopy)(&pOcc, tauSqBeta, &inc, &REAL(tauSqBetaSamples_r)[sPost*pOcc], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:280:10: note: 'tauSqBetaSamples_r' was declared here 280 | SEXP tauSqBetaSamples_r; | ^~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:1002:21: warning: 'betaCommSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1002 | SET_VECTOR_ELT(result_r, 0, betaCommSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfJSDMNNGP.cpp:275:10: note: 'betaCommSamples_r' was declared here 275 | SEXP betaCommSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGP.cpp -o sfMsPGOccNNGP.o sfMsPGOccNNGP.cpp: In function 'SEXPREC* sfMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': sfMsPGOccNNGP.cpp:1358:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1358 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ sfMsPGOccNNGP.cpp:236:12: note: 'tmp_0' was declared here 236 | double tmp_0, tmp_02; | ^~~~~ sfMsPGOccNNGP.cpp:1334:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1334 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:371:10: note: 'betaStarSamples_r' was declared here 371 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1238:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1238 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:370:10: note: 'sigmaSqPsiSamples_r' was declared here 370 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1325:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1325 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:362:10: note: 'alphaStarSamples_r' was declared here 362 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:1324:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1324 | SET_VECTOR_ELT(result_r, 14, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsPGOccNNGP.cpp:361:10: note: 'sigmaSqPSamples_r' was declared here 361 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sfMsPGOccNNGPPredict.cpp -o sfMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOcc.cpp -o spIntPGOcc.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spIntPGOccNNGP.cpp -o spIntPGOccNNGP.o spIntPGOccNNGP.cpp: In function 'SEXPREC* spIntPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spIntPGOccNNGP.cpp:329:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 329 | double a, v, b, e, mu, var, aij; | ^ spIntPGOccNNGP.cpp:321:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 321 | double logDet; | ^~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOcc.cpp -o spMsPGOcc.o spMsPGOcc.cpp: In function 'SEXPREC* spMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOcc.cpp:1168:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1168 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ spMsPGOcc.cpp:183:12: note: 'tmp_0' was declared here 183 | double tmp_0, tmp_02; | ^~~~~ spMsPGOcc.cpp:1145:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1145 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:300:10: note: 'betaStarSamples_r' was declared here 300 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1046:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1046 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:299:10: note: 'sigmaSqPsiSamples_r' was declared here 299 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1136:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1136 | SET_VECTOR_ELT(result_r, 14, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:291:10: note: 'alphaStarSamples_r' was declared here 291 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:1135:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1135 | SET_VECTOR_ELT(result_r, 13, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOcc.cpp:290:10: note: 'sigmaSqPSamples_r' was declared here 290 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGP.cpp -o spMsPGOccNNGP.o spMsPGOccNNGP.cpp: In function 'SEXPREC* spMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spMsPGOccNNGP.cpp:1207:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1207 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ spMsPGOccNNGP.cpp:232:12: note: 'tmp_0' was declared here 232 | double tmp_0, tmp_02; | ^~~~~ spMsPGOccNNGP.cpp:497:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 497 | double logDet; | ^~~~~~ spMsPGOccNNGP.cpp:466:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 466 | double a, v, b, e, mu, var, aij; | ^ spMsPGOccNNGP.cpp:1184:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1184 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:347:10: note: 'betaStarSamples_r' was declared here 347 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1084:36: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1084 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:346:10: note: 'sigmaSqPsiSamples_r' was declared here 346 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1175:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1175 | SET_VECTOR_ELT(result_r, 14, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:338:10: note: 'alphaStarSamples_r' was declared here 338 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:1174:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1174 | SET_VECTOR_ELT(result_r, 13, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spMsPGOccNNGP.cpp:337:10: note: 'sigmaSqPSamples_r' was declared here 337 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccNNGPPredict.cpp -o spMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spMsPGOccPredict.cpp -o spMsPGOccPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOcc.cpp -o spPGOcc.o spPGOcc.cpp: In function 'SEXPREC* spPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOcc.cpp:918:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 918 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ spPGOcc.cpp:237:12: note: 'tmp_0' was declared here 237 | double tmp_0, tmp_02; | ^~~~~ spPGOcc.cpp:899:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 899 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:217:10: note: 'betaStarSamples_r' was declared here 217 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOcc.cpp:898:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 898 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:216:10: note: 'sigmaSqPsiSamples_r' was declared here 216 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:890:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 890 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:208:10: note: 'alphaStarSamples_r' was declared here 208 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOcc.cpp:806:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 806 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOcc.cpp:207:10: note: 'sigmaSqPSamples_r' was declared here 207 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGP.cpp -o spPGOccNNGP.o spPGOccNNGP.cpp: In function 'SEXPREC* spPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': spPGOccNNGP.cpp:989:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 989 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ spPGOccNNGP.cpp:289:12: note: 'tmp_0' was declared here 289 | double tmp_0, tmp_02; | ^~~~~ spPGOccNNGP.cpp:397:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 397 | double a, v, b, e, mu, var, aij; | ^ spPGOccNNGP.cpp:386:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 386 | double logDet; | ^~~~~~ spPGOccNNGP.cpp:970:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 970 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:269:10: note: 'betaStarSamples_r' was declared here 269 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:969:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 969 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:268:10: note: 'sigmaSqPsiSamples_r' was declared here 268 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:961:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 961 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:260:10: note: 'alphaStarSamples_r' was declared here 260 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:877:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 877 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spPGOccNNGP.cpp:259:10: note: 'sigmaSqPSamples_r' was declared here 259 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccNNGPPredict.cpp -o spPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c spPGOccPredict.cpp -o spPGOccPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stMsPGOccNNGP.cpp -o stMsPGOccNNGP.o stMsPGOccNNGP.cpp: In function 'SEXPREC* stMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stMsPGOccNNGP.cpp:1651:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1651 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ stMsPGOccNNGP.cpp:251:12: note: 'tmp_0' was declared here 251 | double tmp_0, tmp_02; | ^~~~~ stMsPGOccNNGP.cpp:1627:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1627 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:412:10: note: 'ar1ThetaSamples_r' was declared here 412 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1626:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1626 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:411:10: note: 'etaSamples_r' was declared here 411 | SEXP etaSamples_r; | ^~~~~~~~~~~~ stMsPGOccNNGP.cpp:1615:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1615 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:397:10: note: 'betaStarSamples_r' was declared here 397 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1500:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1500 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:396:10: note: 'sigmaSqPsiSamples_r' was declared here 396 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1606:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1606 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:388:10: note: 'alphaStarSamples_r' was declared here 388 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:1496:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1496 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stMsPGOccNNGP.cpp:387:10: note: 'sigmaSqPSamples_r' was declared here 387 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGP.cpp -o stPGOccNNGP.o stPGOccNNGP.cpp: In function 'SEXPREC* stPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': stPGOccNNGP.cpp:510:12: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 510 | double logDet; | ^~~~~~ stPGOccNNGP.cpp:442:12: warning: 'a' may be used uninitialized [-Wmaybe-uninitialized] 442 | double a, v, b, e, mu, var, aij; | ^ stPGOccNNGP.cpp:932:32: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 932 | AR1(nYearsMax, theta[rhoIndx], 1.0, SigmaEta); | ^~~~~~~ stPGOccNNGP.cpp:424:61: note: 'rhoIndx' was declared here 424 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ stPGOccNNGP.cpp:947:17: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 947 | theta[sigmaSqTIndx] = rigamma(aSigmaSqTPost, bSigmaSqTPost); | ^~~~~~~~~~~~ stPGOccNNGP.cpp:424:47: note: 'sigmaSqTIndx' was declared here 424 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ stPGOccNNGP.cpp:1210:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1210 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:307:10: note: 'betaStarSamples_r' was declared here 307 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1109:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1109 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:306:10: note: 'sigmaSqPsiSamples_r' was declared here 306 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1201:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1201 | SET_VECTOR_ELT(result_r, 8, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:298:10: note: 'alphaStarSamples_r' was declared here 298 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1115:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1115 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:297:10: note: 'sigmaSqPSamples_r' was declared here 297 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:1221:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1221 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ stPGOccNNGP.cpp:288:10: note: 'etaSamples_r' was declared here 288 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c stPGOccNNGPPredict.cpp -o stPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGP.cpp -o svcMsPGOccNNGP.o svcMsPGOccNNGP.cpp: In function 'SEXPREC* svcMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcMsPGOccNNGP.cpp:1451:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1451 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ svcMsPGOccNNGP.cpp:248:12: note: 'tmp_0' was declared here 248 | double tmp_0, tmp_02; | ^~~~~ svcMsPGOccNNGP.cpp:1427:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1427 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:382:10: note: 'betaStarSamples_r' was declared here 382 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1330:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1330 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:381:10: note: 'sigmaSqPsiSamples_r' was declared here 381 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1418:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1418 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:373:10: note: 'alphaStarSamples_r' was declared here 373 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:1417:21: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1417 | SET_VECTOR_ELT(result_r, 14, sigmaSqPSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcMsPGOccNNGP.cpp:372:10: note: 'sigmaSqPSamples_r' was declared here 372 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcMsPGOccNNGPPredict.cpp -o svcMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGBinomNNGP.cpp -o svcPGBinomNNGP.o svcPGBinomNNGP.cpp: In function 'SEXPREC* svcPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGBinomNNGP.cpp:581:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 581 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGBinomNNGP.cpp:323:12: note: 'logDet' was declared here 323 | double logDet; | ^~~~~~ svcPGBinomNNGP.cpp:812:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 812 | SET_VECTOR_ELT(result_r, 10, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:240:10: note: 'betaStarSamples_r' was declared here 240 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:811:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 811 | SET_VECTOR_ELT(result_r, 9, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGBinomNNGP.cpp:239:10: note: 'sigmaSqPsiSamples_r' was declared here 239 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGP.cpp -o svcPGOccNNGP.o svcPGOccNNGP.cpp: In function 'SEXPREC* svcPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcPGOccNNGP.cpp:1082:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1082 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ svcPGOccNNGP.cpp:305:12: note: 'tmp_0' was declared here 305 | double tmp_0, tmp_02; | ^~~~~ svcPGOccNNGP.cpp:779:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 779 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcPGOccNNGP.cpp:405:12: note: 'logDet' was declared here 405 | double logDet; | ^~~~~~ svcPGOccNNGP.cpp:1063:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1063 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:285:10: note: 'betaStarSamples_r' was declared here 285 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:1062:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1062 | SET_VECTOR_ELT(result_r, tmp_0, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:284:10: note: 'sigmaSqPsiSamples_r' was declared here 284 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:1054:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1054 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:276:10: note: 'alphaStarSamples_r' was declared here 276 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:967:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 967 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcPGOccNNGP.cpp:275:10: note: 'sigmaSqPSamples_r' was declared here 275 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcPGOccNNGPPredict.cpp -o svcPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGP.cpp -o svcTMsPGOccNNGP.o svcTMsPGOccNNGP.cpp: In function 'SEXPREC* svcTMsPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTMsPGOccNNGP.cpp:1755:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1755 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ svcTMsPGOccNNGP.cpp:262:12: note: 'tmp_0' was declared here 262 | double tmp_0, tmp_02; | ^~~~~ svcTMsPGOccNNGP.cpp:1731:21: warning: 'ar1ThetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1731 | SET_VECTOR_ELT(result_r, ar1Ind + 1, ar1ThetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:425:10: note: 'ar1ThetaSamples_r' was declared here 425 | SEXP ar1ThetaSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1730:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1730 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:424:10: note: 'etaSamples_r' was declared here 424 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1719:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1719 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:410:10: note: 'betaStarSamples_r' was declared here 410 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1600:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1600 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:409:10: note: 'sigmaSqPsiSamples_r' was declared here 409 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1710:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1710 | SET_VECTOR_ELT(result_r, 15, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:401:10: note: 'alphaStarSamples_r' was declared here 401 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:1596:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1596 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTMsPGOccNNGP.cpp:400:10: note: 'sigmaSqPSamples_r' was declared here 400 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTMsPGOccNNGPPredict.cpp -o svcTMsPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGBinomNNGP.cpp -o svcTPGBinomNNGP.o svcTPGBinomNNGP.cpp: In function 'SEXPREC* svcTPGBinomNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGBinomNNGP.cpp:680:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 680 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGBinomNNGP.cpp:368:12: note: 'logDet' was declared here 368 | double logDet; | ^~~~~~ svcTPGBinomNNGP.cpp:1049:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1049 | SET_VECTOR_ELT(result_r, tmp_0, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:273:10: note: 'etaSamples_r' was declared here 273 | SEXP etaSamples_r; | ^~~~~~~~~~~~ svcTPGBinomNNGP.cpp:1041:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1041 | SET_VECTOR_ELT(result_r, 9, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:261:10: note: 'betaStarSamples_r' was declared here 261 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:1040:21: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1040 | SET_VECTOR_ELT(result_r, 8, sigmaSqPsiSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGBinomNNGP.cpp:260:10: note: 'sigmaSqPsiSamples_r' was declared here 260 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGP.cpp -o svcTPGOccNNGP.o svcTPGOccNNGP.cpp: In function 'SEXPREC* svcTPGOccNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': svcTPGOccNNGP.cpp:879:9: warning: 'logDet' may be used uninitialized [-Wmaybe-uninitialized] 879 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcTPGOccNNGP.cpp:455:12: note: 'logDet' was declared here 455 | double logDet; | ^~~~~~ svcTPGOccNNGP.cpp:437:61: warning: 'rhoIndx' may be used uninitialized [-Wmaybe-uninitialized] 437 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~ svcTPGOccNNGP.cpp:1020:17: warning: 'sigmaSqTIndx' may be used uninitialized [-Wmaybe-uninitialized] 1020 | theta[sigmaSqTIndx] = rigamma(aSigmaSqTPost, bSigmaSqTPost); | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:437:47: note: 'sigmaSqTIndx' was declared here 437 | int nTheta, sigmaSqIndx, phiIndx, nuIndx, sigmaSqTIndx, rhoIndx; | ^~~~~~~~~~~~ svcTPGOccNNGP.cpp:1304:21: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1304 | SET_VECTOR_ELT(result_r, tmp_0 + 1, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:317:10: note: 'betaStarSamples_r' was declared here 317 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1184:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1184 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:316:10: note: 'sigmaSqPsiSamples_r' was declared here 316 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1295:21: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1295 | SET_VECTOR_ELT(result_r, 10, alphaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:308:10: note: 'alphaStarSamples_r' was declared here 308 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1190:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1190 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:307:10: note: 'sigmaSqPSamples_r' was declared here 307 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:1315:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1315 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcTPGOccNNGP.cpp:298:10: note: 'etaSamples_r' was declared here 298 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c svcTPGOccNNGPPredict.cpp -o svcTPGOccNNGPPredict.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tMsPGOcc.cpp -o tMsPGOcc.o tMsPGOcc.cpp: In function 'SEXPREC* tMsPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tMsPGOcc.cpp:1157:42: warning: 'tmp_0' may be used uninitialized [-Wmaybe-uninitialized] 1157 | SET_VECTOR_ELT(resultName_r, tmp_0 + 1, mkChar("beta.star.samples")); | ~~~~~~^~~ tMsPGOcc.cpp:180:12: note: 'tmp_0' was declared here 180 | double tmp_0, tmp_02; | ^~~~~ tMsPGOcc.cpp:1027:62: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1027 | F77_NAME(dcopy)(&nOccREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nOccREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:309:10: note: 'betaStarSamples_r' was declared here 309 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1026:63: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1026 | F77_NAME(dcopy)(&pOccRE, sigmaSqPsi, &inc, &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:308:10: note: 'sigmaSqPsiSamples_r' was declared here 308 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1023:63: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1023 | F77_NAME(dcopy)(&nDetREN, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:300:10: note: 'alphaStarSamples_r' was declared here 300 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1022:61: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1022 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:299:10: note: 'sigmaSqPSamples_r' was declared here 299 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:1136:21: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1136 | SET_VECTOR_ELT(result_r, ar1Ind + 1, thetaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:276:10: note: 'thetaSamples_r' was declared here 276 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ tMsPGOcc.cpp:1135:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 1135 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tMsPGOcc.cpp:275:10: note: 'etaSamples_r' was declared here 275 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tPGOcc.cpp -o tPGOcc.o tPGOcc.cpp: In function 'SEXPREC* tPGOcc(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)': tPGOcc.cpp:807:58: warning: 'thetaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 807 | F77_NAME(dcopy)(&nTheta, theta, &inc, &REAL(thetaSamples_r)[sPost*nTheta], &inc); | ~~~~^~~~~~~~~~~~~~~~ tPGOcc.cpp:349:10: note: 'thetaSamples_r' was declared here 349 | SEXP thetaSamples_r; | ^~~~~~~~~~~~~~ tPGOcc.cpp:814:34: warning: 'betaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 814 | &REAL(betaStarSamples_r)[sPost*nOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:225:10: note: 'betaStarSamples_r' was declared here 225 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:812:34: warning: 'sigmaSqPsiSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 812 | &REAL(sigmaSqPsiSamples_r)[sPost*pOccRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:224:10: note: 'sigmaSqPsiSamples_r' was declared here 224 | SEXP sigmaSqPsiSamples_r; | ^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:820:34: warning: 'alphaStarSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 820 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:216:10: note: 'alphaStarSamples_r' was declared here 216 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ tPGOcc.cpp:818:34: warning: 'sigmaSqPSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 818 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:215:10: note: 'sigmaSqPSamples_r' was declared here 215 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ tPGOcc.cpp:911:21: warning: 'etaSamples_r' may be used uninitialized [-Wmaybe-uninitialized] 911 | SET_VECTOR_ELT(result_r, ar1Ind, etaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ tPGOcc.cpp:206:10: note: 'etaSamples_r' was declared here 206 | SEXP etaSamples_r; | ^~~~~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c util.cpp -o util.o g++ -std=gnu++17 -shared -s -static-libgcc -o spOccupancy.dll tmp.def PGOcc.o idist.o init.o intMsPGOcc.o intPGOcc.o lfJSDM.o lfMsPGOcc.o mkSpCov.o msPGOcc.o nn.o postHocLM.o rpg.o sfJSDMNNGP.o sfMsPGOccNNGP.o sfMsPGOccNNGPPredict.o spIntPGOcc.o spIntPGOccNNGP.o spMsPGOcc.o spMsPGOccNNGP.o spMsPGOccNNGPPredict.o spMsPGOccPredict.o spPGOcc.o spPGOccNNGP.o spPGOccNNGPPredict.o spPGOccPredict.o stMsPGOccNNGP.o stPGOccNNGP.o stPGOccNNGPPredict.o svcMsPGOccNNGP.o svcMsPGOccNNGPPredict.o svcPGBinomNNGP.o svcPGOccNNGP.o svcPGOccNNGPPredict.o svcTMsPGOccNNGP.o svcTMsPGOccNNGPPredict.o svcTPGBinomNNGP.o svcTPGOccNNGP.o svcTPGOccNNGPPredict.o tMsPGOcc.o tPGOcc.o util.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-spOccupancy/00new/spOccupancy/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spOccupancy)