* installing *source* package ‘spBayes’ ... ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c adaptMetropGibbs.cpp -o adaptMetropGibbs.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c idist.cpp -o idist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c init.cpp -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c mkSpCov.cpp -o mkSpCov.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c nonSpGLM_AMCMC.cpp -o nonSpGLM_AMCMC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c ptsInPoly.cpp -o ptsInPoly.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spDynLM.cpp -o spDynLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spGLM.cpp -o spGLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spGLM_AMCMC.cpp -o spGLM_AMCMC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spLM.cpp -o spLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spLMPredict.cpp -o spLMPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spLMRecover.cpp -o spLMRecover.o spLMRecover.cpp: In function ‘SEXPREC* spLMRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spLMRecover.cpp:191:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 191 | mvrnorm(&REAL(betaSamples_r)[s*p], bb, B, p, false); | ~~~~^~~~~~~~~~~~~~~ spLMRecover.cpp:86:10: note: ‘betaSamples_r’ was declared here 86 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spLMRecover.cpp:241:17: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 241 | REAL(wSamples_r)[s*n+k] = vU[k] + vU[n+k]; | ~~~~^~~~~~~~~~~~ spLMRecover.cpp:86:25: note: ‘wSamples_r’ was declared here 86 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMPPMvDIC.cpp -o spMPPMvDIC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMisalign.cpp -o spMisalign.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMisalignGLM.cpp -o spMisalignGLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMisalignGLMPredict.cpp -o spMisalignGLMPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMisalignPredict.cpp -o spMisalignPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMisalignRecover.cpp -o spMisalignRecover.o spMisalignRecover.cpp: In function ‘SEXPREC* spMisalignRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spMisalignRecover.cpp:245:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 245 | mvrnorm(&REAL(betaSamples_r)[s*P], bb, B, P, false); | ~~~~^~~~~~~~~~~~~~~ spMisalignRecover.cpp:106:10: note: ‘betaSamples_r’ was declared here 106 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spMisalignRecover.cpp:302:24: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 302 | mvrnorm(&REAL(wSamples_r)[s*N], vU, C, N, false); | ~~~~^~~~~~~~~~~~ spMisalignRecover.cpp:106:25: note: ‘wSamples_r’ was declared here 106 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMvGLM.cpp -o spMvGLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMvGLMPredict.cpp -o spMvGLMPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMvGLM_AMCMC.cpp -o spMvGLM_AMCMC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMvLM.cpp -o spMvLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMvLMPredict.cpp -o spMvLMPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spMvLMRecover.cpp -o spMvLMRecover.o spMvLMRecover.cpp: In function ‘SEXPREC* spMvLMRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spMvLMRecover.cpp:262:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 262 | mvrnorm(&REAL(betaSamples_r)[s*p], bb, B, p, false); | ~~~~^~~~~~~~~~~~~~~ spMvLMRecover.cpp:111:10: note: ‘betaSamples_r’ was declared here 111 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spMvLMRecover.cpp:370:17: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 370 | REAL(wSamples_r)[s*nm+k] = vU[nm+k] + vU[k]; | ~~~~^~~~~~~~~~~~ spMvLMRecover.cpp:111:25: note: ‘wSamples_r’ was declared here 111 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPDynLM.cpp -o spPPDynLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPGLM.cpp -o spPPGLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPGLM_AMCMC.cpp -o spPPGLM_AMCMC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPLM.cpp -o spPPLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPLMPredict.cpp -o spPPLMPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPLMRecover.cpp -o spPPLMRecover.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPMvGLM.cpp -o spPPMvGLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPMvGLMPredict.cpp -o spPPMvGLMPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPMvGLM_AMCMC.cpp -o spPPMvGLM_AMCMC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPMvLM.cpp -o spPPMvLM.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPMvLMPredict.cpp -o spPPMvLMPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spPPMvLMRecover.cpp -o spPPMvLMRecover.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spSVC.cpp -o spSVC.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spSVCPredictJoint.cpp -o spSVCPredictJoint.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spSVCPredictMarg.cpp -o spSVCPredictMarg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c spSVCRecover.cpp -o spSVCRecover.o spSVCRecover.cpp: In function ‘SEXPREC* spSVCRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spSVCRecover.cpp:294:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 294 | mvrnorm(&REAL(betaSamples_r)[s*p], bb, B, p, false); | ~~~~^~~~~~~~~~~~~~~ spSVCRecover.cpp:99:10: note: ‘betaSamples_r’ was declared here 99 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spSVCRecover.cpp:336:24: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 336 | mvrnorm(&REAL(wSamples_r)[s*nm], tmp_nm2, K, nm, false); | ~~~~^~~~~~~~~~~~ spSVCRecover.cpp:99:25: note: ‘wSamples_r’ was declared here 99 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DSTRICT_R_HEADERS=1 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c util.cpp -o util.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o spBayes.so adaptMetropGibbs.o idist.o init.o mkSpCov.o nonSpGLM_AMCMC.o ptsInPoly.o spDynLM.o spGLM.o spGLM_AMCMC.o spLM.o spLMPredict.o spLMRecover.o spMPPMvDIC.o spMisalign.o spMisalignGLM.o spMisalignGLMPredict.o spMisalignPredict.o spMisalignRecover.o spMvGLM.o spMvGLMPredict.o spMvGLM_AMCMC.o spMvLM.o spMvLMPredict.o spMvLMRecover.o spPPDynLM.o spPPGLM.o spPPGLM_AMCMC.o spPPLM.o spPPLMPredict.o spPPLMRecover.o spPPMvGLM.o spPPMvGLMPredict.o spPPMvGLM_AMCMC.o spPPMvLM.o spPPMvLMPredict.o spPPMvLMRecover.o spSVC.o spSVCPredictJoint.o spSVCPredictMarg.o spSVCRecover.o util.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR installing to /home/hornik/tmp/CRAN_recheck/spBayes.Rcheck/00LOCK-spBayes/00new/spBayes/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spBayes)