downloading reverse dependencies ... downloading spOccupancy_0.7.6.tar.gz ... ok installing dependencies ‘spAbundance’ * installing *source* package ‘spAbundance’ ... ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c DS.cpp -o DS.o DS.cpp: In function ‘SEXPREC* DS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: DS.cpp:774:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 774 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ DS.cpp:204:10: note: ‘sigmaSqPSamples_r’ was declared here 204 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ DS.cpp:776:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 776 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ DS.cpp:205:10: note: ‘alphaStarSamples_r’ was declared here 205 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ DS.cpp:768:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 768 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ DS.cpp:213:10: note: ‘sigmaSqMuSamples_r’ was declared here 213 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ DS.cpp:770:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 770 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ DS.cpp:214:10: note: ‘betaStarSamples_r’ was declared here 214 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ DS.cpp:868:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 868 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ DS.cpp:236:12: note: ‘tmp_0’ was declared here 236 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c NMix.cpp -o NMix.o NMix.cpp: In function ‘SEXPREC* NMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: NMix.cpp:616:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 616 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ NMix.cpp:201:10: note: ‘sigmaSqPSamples_r’ was declared here 201 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ NMix.cpp:618:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 618 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ NMix.cpp:202:10: note: ‘alphaStarSamples_r’ was declared here 202 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ NMix.cpp:610:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 610 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ NMix.cpp:210:10: note: ‘sigmaSqMuSamples_r’ was declared here 210 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ NMix.cpp:612:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 612 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ NMix.cpp:211:10: note: ‘betaStarSamples_r’ was declared here 211 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ NMix.cpp:708:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 708 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ NMix.cpp:222:12: note: ‘tmp_0’ was declared here 222 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c abund.cpp -o abund.o abund.cpp: In function ‘SEXPREC* abund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: abund.cpp:411:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 411 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ abund.cpp:169:10: note: ‘sigmaSqMuSamples_r’ was declared here 169 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ abund.cpp:413:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 413 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ abund.cpp:170:10: note: ‘betaStarSamples_r’ was declared here 170 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c abundGaussian.cpp -o abundGaussian.o abundGaussian.cpp: In function ‘SEXPREC* abundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: abundGaussian.cpp:371:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 371 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ abundGaussian.cpp:164:10: note: ‘sigmaSqMuSamples_r’ was declared here 164 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ abundGaussian.cpp:373:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 373 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ abundGaussian.cpp:165:10: note: ‘betaStarSamples_r’ was declared here 165 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkAlphaDS.cpp -o checkAlphaDS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c checkMSAlphaDS.cpp -o checkMSAlphaDS.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c idist.cpp -o idist.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsAbund.cpp -o lfMsAbund.o lfMsAbund.cpp: In function ‘SEXPREC* lfMsAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: lfMsAbund.cpp:721:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 721 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:220:10: note: ‘sigmaSqMuSamples_r’ was declared here 220 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:722:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 722 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:221:10: note: ‘betaStarSamples_r’ was declared here 221 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsAbund.cpp:807:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 807 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsAbund.cpp:229:10: note: ‘kappaSamples_r’ was declared here 229 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsAbundGaussian.cpp -o lfMsAbundGaussian.o lfMsAbundGaussian.cpp: In function ‘SEXPREC* lfMsAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: lfMsAbundGaussian.cpp:680:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 680 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsAbundGaussian.cpp:244:10: note: ‘sigmaSqMuSamples_r’ was declared here 244 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsAbundGaussian.cpp:681:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 681 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsAbundGaussian.cpp:245:10: note: ‘betaStarSamples_r’ was declared here 245 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsDS.cpp -o lfMsDS.o lfMsDS.cpp: In function ‘SEXPREC* lfMsDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: lfMsDS.cpp:1153:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1153 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:278:10: note: ‘sigmaSqPSamples_r’ was declared here 278 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsDS.cpp:1154:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1154 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:279:10: note: ‘alphaStarSamples_r’ was declared here 279 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsDS.cpp:1157:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1157 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:287:10: note: ‘sigmaSqMuSamples_r’ was declared here 287 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsDS.cpp:1158:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1158 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:288:10: note: ‘betaStarSamples_r’ was declared here 288 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsDS.cpp:1260:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1260 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsDS.cpp:295:10: note: ‘kappaSamples_r’ was declared here 295 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ lfMsDS.cpp:1256:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1256 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ lfMsDS.cpp:186:12: note: ‘tmp_0’ was declared here 186 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lfMsNMix.cpp -o lfMsNMix.o lfMsNMix.cpp: In function ‘SEXPREC* lfMsNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: lfMsNMix.cpp:1014:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1014 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:271:10: note: ‘sigmaSqPSamples_r’ was declared here 271 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1015:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1015 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:272:10: note: ‘alphaStarSamples_r’ was declared here 272 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1018:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1018 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:280:10: note: ‘sigmaSqMuSamples_r’ was declared here 280 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1019:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1019 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:281:10: note: ‘betaStarSamples_r’ was declared here 281 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ lfMsNMix.cpp:1116:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1116 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lfMsNMix.cpp:288:10: note: ‘kappaSamples_r’ was declared here 288 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ lfMsNMix.cpp:1112:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1112 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ lfMsNMix.cpp:179:12: note: ‘tmp_0’ was declared here 179 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mkSpCov.cpp -o mkSpCov.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msAbund.cpp -o msAbund.o msAbund.cpp: In function ‘SEXPREC* msAbund(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: msAbund.cpp:527:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 527 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msAbund.cpp:200:10: note: ‘sigmaSqMuSamples_r’ was declared here 200 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msAbund.cpp:528:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 528 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msAbund.cpp:201:10: note: ‘betaStarSamples_r’ was declared here 201 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msAbund.cpp:611:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 611 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msAbund.cpp:209:10: note: ‘kappaSamples_r’ was declared here 209 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msAbundGaussian.cpp -o msAbundGaussian.o msAbundGaussian.cpp: In function ‘SEXPREC* msAbundGaussian(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: msAbundGaussian.cpp:500:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 500 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msAbundGaussian.cpp:218:10: note: ‘sigmaSqMuSamples_r’ was declared here 218 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msAbundGaussian.cpp:501:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 501 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msAbundGaussian.cpp:219:10: note: ‘betaStarSamples_r’ was declared here 219 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msDS.cpp -o msDS.o msDS.cpp: In function ‘SEXPREC* msDS(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: msDS.cpp:967:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 967 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msDS.cpp:259:10: note: ‘sigmaSqPSamples_r’ was declared here 259 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ msDS.cpp:968:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 968 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msDS.cpp:260:10: note: ‘alphaStarSamples_r’ was declared here 260 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msDS.cpp:971:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 971 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msDS.cpp:268:10: note: ‘sigmaSqMuSamples_r’ was declared here 268 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msDS.cpp:972:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 972 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msDS.cpp:269:10: note: ‘betaStarSamples_r’ was declared here 269 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msDS.cpp:1072:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1072 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msDS.cpp:276:10: note: ‘kappaSamples_r’ was declared here 276 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ msDS.cpp:1068:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1068 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ msDS.cpp:180:12: note: ‘tmp_0’ was declared here 180 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c msNMix.cpp -o msNMix.o msNMix.cpp: In function ‘SEXPREC* msNMix(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: msNMix.cpp:840:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 840 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msNMix.cpp:253:10: note: ‘sigmaSqPSamples_r’ was declared here 253 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ msNMix.cpp:841:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 841 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msNMix.cpp:254:10: note: ‘alphaStarSamples_r’ was declared here 254 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ msNMix.cpp:844:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 844 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ msNMix.cpp:262:10: note: ‘sigmaSqMuSamples_r’ was declared here 262 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ msNMix.cpp:845:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 845 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ msNMix.cpp:263:10: note: ‘betaStarSamples_r’ was declared here 263 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ msNMix.cpp:940:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 940 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ msNMix.cpp:270:10: note: ‘kappaSamples_r’ was declared here 270 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ msNMix.cpp:936:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 936 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ msNMix.cpp:174:12: note: ‘tmp_0’ was declared here 174 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nn.cpp -o nn.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rpg.cpp -o rpg.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundGaussianNNGP.cpp -o sfMsAbundGaussianNNGP.o sfMsAbundGaussianNNGP.cpp: In function ‘SEXPREC* sfMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: sfMsAbundGaussianNNGP.cpp:943:53: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 943 | F77_NAME(dcopy)(&JN, yRep, &inc, &REAL(yRepSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:301:10: note: ‘yRepSamples_r’ was declared here 301 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:942:51: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 942 | F77_NAME(dcopy)(&JN, mu, &inc, &REAL(muSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:302:10: note: ‘muSamples_r’ was declared here 302 | SEXP muSamples_r; | ^~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:944:53: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 944 | F77_NAME(dcopy)(&JN, like, &inc, &REAL(likeSamples_r)[sPost*JN], &inc); | ~~~~^~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:303:10: note: ‘likeSamples_r’ was declared here 303 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:949:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 949 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:320:10: note: ‘sigmaSqMuSamples_r’ was declared here 320 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:950:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 950 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsAbundGaussianNNGP.cpp:321:10: note: ‘betaStarSamples_r’ was declared here 321 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundNNGP.cpp -o sfMsAbundNNGP.o sfMsAbundNNGP.cpp: In function ‘SEXPREC* sfMsAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: sfMsAbundNNGP.cpp:539:21: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 539 | SET_VECTOR_ELT(result_r, 3, yRepSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:269:10: note: ‘yRepSamples_r’ was declared here 269 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ sfMsAbundNNGP.cpp:540:21: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 540 | SET_VECTOR_ELT(result_r, 4, muSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:270:10: note: ‘muSamples_r’ was declared here 270 | SEXP muSamples_r; | ^~~~~~~~~~~ sfMsAbundNNGP.cpp:541:21: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 541 | SET_VECTOR_ELT(result_r, 10, likeSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:271:10: note: ‘likeSamples_r’ was declared here 271 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ sfMsAbundNNGP.cpp:549:21: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 549 | SET_VECTOR_ELT(result_r, 11, sigmaSqMuSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:288:10: note: ‘sigmaSqMuSamples_r’ was declared here 288 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:550:21: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 550 | SET_VECTOR_ELT(result_r, 12, betaStarSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:289:10: note: ‘betaStarSamples_r’ was declared here 289 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:558:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 558 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsAbundNNGP.cpp:297:10: note: ‘kappaSamples_r’ was declared here 297 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsAbundNNGPPredict.cpp -o sfMsAbundNNGPPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsDSNNGP.cpp -o sfMsDSNNGP.o sfMsDSNNGP.cpp: In function ‘SEXPREC* sfMsDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: sfMsDSNNGP.cpp:1429:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1429 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:342:10: note: ‘sigmaSqPSamples_r’ was declared here 342 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1430:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1430 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:343:10: note: ‘alphaStarSamples_r’ was declared here 343 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1433:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1433 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:351:10: note: ‘sigmaSqMuSamples_r’ was declared here 351 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1434:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1434 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:352:10: note: ‘betaStarSamples_r’ was declared here 352 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1543:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1543 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsDSNNGP.cpp:359:10: note: ‘kappaSamples_r’ was declared here 359 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ sfMsDSNNGP.cpp:1539:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1539 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ sfMsDSNNGP.cpp:244:12: note: ‘tmp_0’ was declared here 244 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsNMixNNGP.cpp -o sfMsNMixNNGP.o sfMsNMixNNGP.cpp: In function ‘SEXPREC* sfMsNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: sfMsNMixNNGP.cpp:1290:61: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1290 | F77_NAME(dcopy)(&pDetRE, sigmaSqP, &inc, &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:336:10: note: ‘sigmaSqPSamples_r’ was declared here 336 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1291:65: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1291 | F77_NAME(dcopy)(&nDetREnSp, alphaStar, &inc, &REAL(alphaStarSamples_r)[sPost*nDetREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:337:10: note: ‘alphaStarSamples_r’ was declared here 337 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1294:64: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1294 | F77_NAME(dcopy)(&pAbundRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:345:10: note: ‘sigmaSqMuSamples_r’ was declared here 345 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1295:66: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1295 | F77_NAME(dcopy)(&nAbundREnSp, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nAbundREnSp], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:346:10: note: ‘betaStarSamples_r’ was declared here 346 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1399:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1399 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:353:10: note: ‘kappaSamples_r’ was declared here 353 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ sfMsNMixNNGP.cpp:1395:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1395 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ sfMsNMixNNGP.cpp:238:12: note: ‘tmp_0’ was declared here 238 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c sfMsNMixNNGPPredict.cpp -o sfMsNMixNNGPPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spAbundGaussianNNGP.cpp -o spAbundGaussianNNGP.o spAbundGaussianNNGP.cpp: In function ‘SEXPREC* spAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spAbundGaussianNNGP.cpp:663:52: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 663 | F77_NAME(dcopy)(&J, yRep, &inc, &REAL(yRepSamples_r)[sPost*J], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:230:10: note: ‘yRepSamples_r’ was declared here 230 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:664:60: warning: ‘yRepZeroSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 664 | F77_NAME(dcopy)(&JZero, yRepZero, &inc, &REAL(yRepZeroSamples_r)[sPost*JZero], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:231:10: note: ‘yRepZeroSamples_r’ was declared here 231 | SEXP yRepZeroSamples_r; | ^~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:665:50: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 665 | F77_NAME(dcopy)(&J, mu, &inc, &REAL(muSamples_r)[sPost*J], &inc); | ~~~~^~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:232:10: note: ‘muSamples_r’ was declared here 232 | SEXP muSamples_r; | ^~~~~~~~~~~ spAbundGaussianNNGP.cpp:667:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 667 | &REAL(likeSamples_r)[sPost*J], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:233:10: note: ‘likeSamples_r’ was declared here 233 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:671:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 671 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:248:10: note: ‘sigmaSqMuSamples_r’ was declared here 248 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:673:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 673 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spAbundGaussianNNGP.cpp:249:10: note: ‘betaStarSamples_r’ was declared here 249 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spAbundNNGP.cpp -o spAbundNNGP.o spAbundNNGP.cpp: In function ‘SEXPREC* spAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spAbundNNGP.cpp:760:55: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 760 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundNNGP.cpp:223:10: note: ‘yRepSamples_r’ was declared here 223 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ spAbundNNGP.cpp:759:53: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 759 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~ spAbundNNGP.cpp:224:10: note: ‘muSamples_r’ was declared here 224 | SEXP muSamples_r; | ^~~~~~~~~~~ spAbundNNGP.cpp:762:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 762 | &REAL(likeSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~~~ spAbundNNGP.cpp:225:10: note: ‘likeSamples_r’ was declared here 225 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ spAbundNNGP.cpp:861:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 861 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:237:10: note: ‘kappaSamples_r’ was declared here 237 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ spAbundNNGP.cpp:771:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 771 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:243:10: note: ‘sigmaSqMuSamples_r’ was declared here 243 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:773:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 773 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spAbundNNGP.cpp:244:10: note: ‘betaStarSamples_r’ was declared here 244 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spDSNNGP.cpp -o spDSNNGP.o spDSNNGP.cpp: In function ‘SEXPREC* spDSNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spDSNNGP.cpp:1235:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1235 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:261:10: note: ‘kappaSamples_r’ was declared here 261 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ spDSNNGP.cpp:1128:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1128 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:273:10: note: ‘sigmaSqPSamples_r’ was declared here 273 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1130:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1130 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:274:10: note: ‘alphaStarSamples_r’ was declared here 274 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1122:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1122 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:282:10: note: ‘sigmaSqMuSamples_r’ was declared here 282 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1124:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1124 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spDSNNGP.cpp:283:10: note: ‘betaStarSamples_r’ was declared here 283 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spDSNNGP.cpp:1231:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1231 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ spDSNNGP.cpp:305:12: note: ‘tmp_0’ was declared here 305 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spNMixNNGP.cpp -o spNMixNNGP.o spNMixNNGP.cpp: In function ‘SEXPREC* spNMixNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spNMixNNGP.cpp:1076:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1076 | SET_VECTOR_ELT(result_r, tmp_02, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:259:10: note: ‘kappaSamples_r’ was declared here 259 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ spNMixNNGP.cpp:976:36: warning: ‘sigmaSqPSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 976 | &REAL(sigmaSqPSamples_r)[sPost*pDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:271:10: note: ‘sigmaSqPSamples_r’ was declared here 271 | SEXP sigmaSqPSamples_r; | ^~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:978:36: warning: ‘alphaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 978 | &REAL(alphaStarSamples_r)[sPost*nDetRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:272:10: note: ‘alphaStarSamples_r’ was declared here 272 | SEXP alphaStarSamples_r; | ^~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:970:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 970 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:280:10: note: ‘sigmaSqMuSamples_r’ was declared here 280 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:972:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 972 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:281:10: note: ‘betaStarSamples_r’ was declared here 281 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ spNMixNNGP.cpp:1072:16: warning: ‘tmp_0’ may be used uninitialized [-Wmaybe-uninitialized] 1072 | tmp_02 = tmp_0 + 2; | ~~~~~~~^~~~~~~~~~~ spNMixNNGP.cpp:292:12: note: ‘tmp_0’ was declared here 292 | double tmp_0, tmp_02; | ^~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spNMixNNGPPredict.cpp -o spNMixNNGPPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundGaussianNNGP.cpp -o svcAbundGaussianNNGP.o svcAbundGaussianNNGP.cpp: In function ‘SEXPREC* svcAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: svcAbundGaussianNNGP.cpp:712:34: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 712 | &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcAbundGaussianNNGP.cpp:244:10: note: ‘sigmaSqMuSamples_r’ was declared here 244 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ svcAbundGaussianNNGP.cpp:714:34: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 714 | &REAL(betaStarSamples_r)[sPost*nRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcAbundGaussianNNGP.cpp:245:10: note: ‘betaStarSamples_r’ was declared here 245 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ svcAbundGaussianNNGP.cpp:581:9: warning: ‘logDet’ may be used uninitialized [-Wmaybe-uninitialized] 581 | #pragma omp parallel for private (e, i, b) reduction(+:aa, logDet) | ^~~ svcAbundGaussianNNGP.cpp:331:12: note: ‘logDet’ was declared here 331 | double logDet; | ^~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundGaussianNNGPPredict.cpp -o svcAbundGaussianNNGPPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundNNGP.cpp -o svcAbundNNGP.o svcAbundNNGP.cpp: In function ‘SEXPREC* svcAbundNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: svcAbundNNGP.cpp:796:55: warning: ‘yRepSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 796 | F77_NAME(dcopy)(&nObs, yRep, &inc, &REAL(yRepSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~~~ svcAbundNNGP.cpp:226:10: note: ‘yRepSamples_r’ was declared here 226 | SEXP yRepSamples_r; | ^~~~~~~~~~~~~ svcAbundNNGP.cpp:795:53: warning: ‘muSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 795 | F77_NAME(dcopy)(&nObs, mu, &inc, &REAL(muSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~ svcAbundNNGP.cpp:227:10: note: ‘muSamples_r’ was declared here 227 | SEXP muSamples_r; | ^~~~~~~~~~~ svcAbundNNGP.cpp:798:36: warning: ‘likeSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 798 | &REAL(likeSamples_r)[sPost*nObs], &inc); | ~~~~^~~~~~~~~~~~~~~ svcAbundNNGP.cpp:228:10: note: ‘likeSamples_r’ was declared here 228 | SEXP likeSamples_r; | ^~~~~~~~~~~~~ svcAbundNNGP.cpp:896:21: warning: ‘kappaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 896 | SET_VECTOR_ELT(result_r, tmp_0, kappaSamples_r); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:240:10: note: ‘kappaSamples_r’ was declared here 240 | SEXP kappaSamples_r; | ^~~~~~~~~~~~~~ svcAbundNNGP.cpp:807:36: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 807 | &REAL(sigmaSqMuSamples_r)[sPost*pAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:246:10: note: ‘sigmaSqMuSamples_r’ was declared here 246 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:809:36: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 809 | &REAL(betaStarSamples_r)[sPost*nAbundRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcAbundNNGP.cpp:247:10: note: ‘betaStarSamples_r’ was declared here 247 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcAbundNNGPPredict.cpp -o svcAbundNNGPPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcMsAbundGaussianNNGP.cpp -o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGP.cpp: In function ‘SEXPREC* svcMsAbundGaussianNNGP(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: svcMsAbundGaussianNNGP.cpp:1031:59: warning: ‘sigmaSqMuSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1031 | F77_NAME(dcopy)(&pRE, sigmaSqMu, &inc, &REAL(sigmaSqMuSamples_r)[sPost*pRE], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~~ svcMsAbundGaussianNNGP.cpp:321:10: note: ‘sigmaSqMuSamples_r’ was declared here 321 | SEXP sigmaSqMuSamples_r; | ^~~~~~~~~~~~~~~~~~ svcMsAbundGaussianNNGP.cpp:1032:59: warning: ‘betaStarSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 1032 | F77_NAME(dcopy)(&nREN, betaStar, &inc, &REAL(betaStarSamples_r)[sPost*nREN], &inc); | ~~~~^~~~~~~~~~~~~~~~~~~ svcMsAbundGaussianNNGP.cpp:322:10: note: ‘betaStarSamples_r’ was declared here 322 | SEXP betaStarSamples_r; | ^~~~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c svcMsAbundGaussianNNGPPredict.cpp -o svcMsAbundGaussianNNGPPredict.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-14/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c waicAbund.cpp -o waicAbund.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-14/lib -Wl,-O1 -o spAbundance.so DS.o NMix.o abund.o abundGaussian.o checkAlphaDS.o checkMSAlphaDS.o idist.o init.o lfMsAbund.o lfMsAbundGaussian.o lfMsDS.o lfMsNMix.o mkSpCov.o msAbund.o msAbundGaussian.o msDS.o msNMix.o nn.o rpg.o sfMsAbundGaussianNNGP.o sfMsAbundNNGP.o sfMsAbundNNGPPredict.o sfMsDSNNGP.o sfMsNMixNNGP.o sfMsNMixNNGPPredict.o spAbundGaussianNNGP.o spAbundNNGP.o spDSNNGP.o spNMixNNGP.o spNMixNNGPPredict.o svcAbundGaussianNNGP.o svcAbundGaussianNNGPPredict.o svcAbundNNGP.o svcAbundNNGPPredict.o svcMsAbundGaussianNNGP.o svcMsAbundGaussianNNGPPredict.o util.o waicAbund.o -llapack -L/home/hornik/tmp/R-d-gcc-14/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R-d-gcc-14/lib -lR installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-spAbundance/00new/spAbundance/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spAbundance) checking spAbundance_0.2.1.tar.gz ... checking spOccupancy_0.7.6.tar.gz ... Depends: Package: spAbundance Depends: R (>= 3.5.0) Imports: stats, coda, abind, RANN, lme4, foreach, doParallel, methods Timings: user system elapsed spAbundance 178.656 9.217 189.653 Results: Check status summary: OK Source packages 1 Reverse depends 1 Check results summary: spAbundance ... OK rdepends_spOccupancy ... OK