* using log directory 'd:/RCompile/CRANincoming/R-devel/sox.Rcheck'
* using R Under development (unstable) (2023-12-09 r85665 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.3.0
    GNU Fortran (GCC) 12.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'sox/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sox' version '1.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Yi Lian <yi.lian@mail.mcgill.ca>'

Found the following (possibly) invalid URLs:
  URL: http://thoth.inrialpes.fr/people/mairal/spams/doc-R/html/doc_spams006.html#sec26 (moved to https://thoth.inrialpes.fr/people/mairal/spams/doc-R/html/doc_spams006.html#sec26)
    From: man/sox.Rd
    Status: 301
    Message: Moved Permanently
  URL: http://thoth.inrialpes.fr/people/mairal/spams/doc-R/html/doc_spams006.html#sec27 (moved to https://thoth.inrialpes.fr/people/mairal/spams/doc-R/html/doc_spams006.html#sec27)
    From: man/sox.Rd
    Status: 301
    Message: Moved Permanently
  For content that is 'Moved Permanently', please change http to https,
  add trailing slashes, or replace the old by the new URL.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sox' can be installed ... OK
* used C++ compiler: 'g++.exe (GCC) 12.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [16s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... ERROR
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/tests.html
  > # * https://testthat.r-lib.org/reference/test_package.html#special-files
  > 
  > library(testthat)
  > library(sox)
  Loading required package: survival
  Loading required package: glmnet
  Loading required package: Matrix
  Loaded glmnet 4.1-8
  > 
  > test_check("sox")
  fold 1
  fold 2
  fold 3
  fold 4
  fold 5
  fold 6
  fold 7
  fold 8
  fold 9
  fold 10
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-sox.R:89:1'): (code run outside of `test_that()`) ──────────────
  Error in `plot.window(...)`: need finite 'ylim' values
  Backtrace:
      ▆
   1. ├─base::plot(cv.overlapping) at test-sox.R:89:1
   2. └─sox::plot.sox_cv(cv.overlapping)
   3.   ├─base::plot(...)
   4.   └─graphics::plot.default(...)
   5.     └─graphics (local) localWindow(xlim, ylim, log, asp, ...)
   6.       └─graphics::plot.window(...)
  
  [ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
  Error: Test failures
  Execution halted
* checking PDF version of manual ... [22s] OK
* checking HTML version of manual ... OK
* DONE
Status: 1 ERROR, 1 NOTE