* using log directory 'd:/RCompile/CRANincoming/R-devel/somhca.Rcheck'
* using R Under development (unstable) (2025-01-17 r87589 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'somhca/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'somhca' version '0.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Gianluca Pastorelli <gianluca.pastorelli@gmail.com>'

New submission

Possibly misspelled words in DESCRIPTION:
  HCA (7:45)
  SOM (7:41, 8:60, 9:34, 10:53)

No Authors@R field in DESCRIPTION.
Please add one, modifying
  Authors@R: person(given = "Gianluca",
                    family = "Pastorelli",
                    role = c("aut", "cre"),
                    email = "gianluca.pastorelli@gmail.com")
as necessary.

The Title field should be in title case. Current version is:
  'Self-Organising Maps coupled with Hierarchical Cluster Analysis'
In title case that is:
  'Self-Organising Maps Coupled with Hierarchical Cluster Analysis'

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'somhca' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
clusterSOM: no visible global function definition for 'dist'
clusterSOM: no visible global function definition for 'hclust'
clusterSOM: no visible global function definition for 'cutree'
clusterSOM: no visible global function definition for
  'colorRampPalette'
clusterSOM: no visible global function definition for 'read.csv'
optimalSOM: no visible global function definition for 'txtProgressBar'
optimalSOM: no visible global function definition for
  'setTxtProgressBar'
optimalSOM: no visible global function definition for 'na.omit'
optimalSOM: no visible binding for global variable 'Quantisation_error'
optimalSOM: no visible binding for global variable 'Topographic_error'
optimalSOM: no visible binding for global variable 'Kaski-Lagus_error'
optimalSOM: no visible binding for global variable 'Explained_variance'
optimalSOM: no visible binding for global variable 'QplusTplusK_error'
optimalSOM: no visible binding for global variable 'QplusT_error'
optimalSOM: no visible binding for global variable 'all_error'
readMatrix: no visible global function definition for 'read.csv'
Undefined global functions or variables:
  Explained_variance Kaski-Lagus_error QplusT_error QplusTplusK_error
  Quantisation_error Topographic_error all_error colorRampPalette
  cutree dist hclust na.omit read.csv setTxtProgressBar txtProgressBar
Consider adding
  importFrom("grDevices", "colorRampPalette")
  importFrom("stats", "cutree", "dist", "hclust", "na.omit")
  importFrom("utils", "read.csv", "setTxtProgressBar", "txtProgressBar")
to your NAMESPACE file.

Found the following assignments to the global environment:
File 'somhca/R/clusterSOM.R':
  assign("Data&Clusters", data, envir = .GlobalEnv)
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... [17s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 NOTEs